Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.7e-25 118.6 62 100.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.6e-20 102.1 53 100.0
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-18 95.9 53 92.5
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 2.9e-17 91.3 52 90.4
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 8.3e-17 89.7 52 88.5
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.5e-13 79.0 54 74.1
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 7.3e-13 76.6 54 72.2
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 3.6e-12 74.3 57 63.2
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 8.1e-12 73.2 50 78.0
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 8.1e-12 73.2 57 64.9
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-11 72.8 57 63.2
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.1e-11 72.8 38 92.1
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.1e-11 72.8 57 61.4
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.8e-11 72.0 53 71.7
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.1e-11 71.2 57 59.6
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.8e-11 70.1 54 63.0
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.2e-10 69.3 51 68.6
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.0e-10 68.6 51 62.7
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 3.4e-10 67.8 51 64.7
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 3.4e-10 67.8 52 63.5
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.4e-10 67.4 54 61.1
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.4e-10 67.4 51 64.7
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.4e-10 67.4 57 61.4
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 5.8e-10 67.0 57 56.1
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 7.5e-10 66.6 57 57.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 7.5e-10 66.6 53 62.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 7.5e-10 66.6 55 54.5
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 7.5e-10 66.6 55 54.5
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 7.5e-10 66.6 55 54.5
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.5e-10 66.6 54 57.4
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 9.8e-10 66.2 51 60.8
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 9.8e-10 66.2 51 62.7
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.8e-10 66.2 51 62.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.8e-10 66.2 51 60.8
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 9.8e-10 66.2 51 58.8
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.3e-09 65.9 53 58.5
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.3e-09 65.9 51 60.8
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.3e-09 65.9 51 62.7
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.7e-09 65.5 51 58.8
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.7e-09 65.5 51 58.8
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.7e-09 65.5 51 56.9
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.2e-09 65.1 53 58.5
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.2e-09 65.1 51 58.8
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 2.2e-09 65.1 52 61.5
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.2e-09 65.1 51 56.9
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.2e-09 65.1 51 58.8
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.2e-09 65.1 55 56.4
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.7e-09 64.3 53 60.4
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.7e-09 64.3 53 60.4
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 4.9e-09 63.9 54 57.4
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 4.9e-09 63.9 52 55.8
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 4.9e-09 63.9 53 60.4
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 4.9e-09 63.9 54 57.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 6.4e-09 63.5 57 56.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 6.4e-09 63.5 57 56.1
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 6.4e-09 63.5 54 55.6
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 6.4e-09 63.5 54 55.6
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 6.4e-09 63.5 53 58.5
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 8.3e-09 63.2 54 53.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 8.3e-09 63.2 52 59.6
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 8.3e-09 63.2 54 53.7
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.1e-08 62.8 51 58.8
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.4e-08 62.4 53 58.5
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.9e-08 62.0 53 56.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.4e-08 61.6 51 58.8
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 2.4e-08 61.6 51 58.8
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.2e-08 61.2 42 73.8
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 5.4e-08 60.5 57 52.6
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 5.4e-08 60.5 51 51.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 7.1e-08 60.1 52 59.6
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 7.1e-08 60.1 51 64.7
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 7.1e-08 60.1 51 64.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 7.1e-08 60.1 51 64.7
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 7.1e-08 60.1 51 54.9
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.2e-07 59.3 46 63.0
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-07 59.3 52 53.8
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.6e-07 58.9 53 52.8
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.6e-07 58.9 54 50.0
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.1e-07 58.5 45 66.7
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.1e-07 58.5 42 69.0
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.1e-07 58.5 53 52.8
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.7e-07 58.2 52 51.9
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.7e-07 58.2 52 51.9
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.7e-07 58.2 52 51.9
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.5e-07 57.8 52 50.0
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.5e-07 57.8 52 51.9
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 3.5e-07 57.8 46 60.9
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.6e-07 57.4 40 72.5
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 4.6e-07 57.4 52 51.9
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 6.0e-07 57.0 48 56.2
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 7.8e-07 56.6 51 60.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 7.8e-07 56.6 53 43.4
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.0e-06 56.2 45 62.2
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.0e-06 56.2 44 63.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.3e-06 55.8 53 47.2
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.3e-06 55.8 51 56.9
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.3e-06 55.8 41 63.4
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.7e-06 55.5 45 60.0
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.7e-06 55.5 51 45.1
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.7e-06 55.5 40 67.5
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.7e-06 55.5 45 62.2
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.7e-06 55.5 44 63.6
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 2.3e-06 55.1 53 50.9
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 3.0e-06 54.7 53 56.6
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.9e-06 54.3 43 65.1
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 3.9e-06 54.3 43 65.1
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.9e-06 54.3 40 62.5
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 6.6e-06 53.5 42 59.5
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 8.6e-06 53.1 43 62.8
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 8.6e-06 53.1 43 55.8
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 8.6e-06 53.1 43 55.8


User provided reference genes

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