Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06493 Brassica carinata HOM05D000131 ORTHO05D031819 7.4e-39 163.3 78 100.0
BcaC05g25344 Brassica carinata HOM05D000131 ORTHO05D000086 4.1e-29 131.0 72 87.5
C05p12220 Brassica napus HOM05D000131 ORTHO05D000654 4.1e-29 131.0 72 87.5
BraA06t24224Z Brassica rapa HOM05D000131 ORTHO05D000086 1.6e-28 129.0 72 86.1
BolC5t29975H Brassica oleracea HOM05D000131 ORTHO05D000086 2.0e-28 128.6 72 86.1
A06p10440 Brassica napus HOM05D000131 ORTHO05D000086 4.5e-28 127.5 72 84.7
BcaC07g38737 Brassica carinata HOM05D000131 ORTHO05D000086 5.5e-26 120.6 72 77.8
A08p31970 Brassica napus HOM05D000131 ORTHO05D000086 5.5e-26 120.6 72 77.8
BolC8t49292H Brassica oleracea HOM05D000131 ORTHO05D000086 5.5e-26 120.6 72 77.8
BcaB03g13097 Brassica carinata HOM05D000131 ORTHO05D000086 7.2e-26 120.2 72 76.4
Sp1g12790 Schrenkiella parvula HOM05D000131 ORTHO05D000086 7.2e-26 120.2 72 76.4
C08p16680 Brassica napus HOM05D000131 ORTHO05D000086 2.7e-25 118.2 72 76.4
BraA08t35118Z Brassica rapa HOM05D000131 ORTHO05D000086 3.6e-25 117.9 72 76.4
AL1G26310 Arabidopsis lyrata HOM05D000131 ORTHO05D000086 1.2e-23 112.8 72 69.4
AT1G14420 Arabidopsis thaliana HOM05D000131 ORTHO05D000086 5.7e-23 110.5 72 68.1
BcaB08g34395 Brassica carinata HOM05D000131 ORTHO05D031819 1.7e-22 109.0 72 72.2
BraA09t41580Z Brassica rapa HOM05D000131 ORTHO05D000086 8.3e-22 106.7 72 70.8
C08p45750 Brassica napus HOM05D000131 ORTHO05D000086 1.1e-21 106.3 72 73.6
BolC8t52129H Brassica oleracea HOM05D000131 ORTHO05D000086 1.1e-21 106.3 72 73.6
A09p62160 Brassica napus HOM05D000131 ORTHO05D031819 2.4e-21 105.1 69 72.5
Carub.0001s1413 Capsella rubella HOM05D000131 ORTHO05D000086 2.0e-20 102.1 72 68.1
BcaC04g21518 Brassica carinata HOM05D000131 ORTHO05D000086 3.5e-20 101.3 72 61.1
C09p30820 Brassica napus HOM05D000131 ORTHO05D000086 3.5e-20 101.3 72 61.1
BolC9t55944H Brassica oleracea HOM05D000131 ORTHO05D000086 3.5e-20 101.3 72 61.1
A02p33080 Brassica napus HOM05D000131 ORTHO05D000086 5.9e-20 100.5 72 61.1
BraA02t08330Z Brassica rapa HOM05D000131 ORTHO05D000086 5.9e-20 100.5 72 61.1
Sp2g13830 Schrenkiella parvula HOM05D000131 ORTHO05D000086 1.0e-19 99.8 72 61.1
C02p50870 Brassica napus HOM05D000131 ORTHO05D000086 1.3e-19 99.4 72 61.1
BolC2t11177H Brassica oleracea HOM05D000131 ORTHO05D000086 1.3e-19 99.4 72 61.1
BraA09t37999Z Brassica rapa HOM05D000131 ORTHO05D000086 1.7e-19 99.0 72 58.3
BcaC03g17164 Brassica carinata HOM05D000131 ORTHO05D000086 2.3e-19 98.6 72 59.7
A09p23930 Brassica napus HOM05D000131 ORTHO05D000086 2.3e-19 98.6 72 58.3
BcaB07g30696 Brassica carinata HOM05D000131 ORTHO05D000086 2.9e-19 98.2 72 58.3
BcaB07g30327 Brassica carinata HOM05D000131 ORTHO05D000086 5.0e-19 97.4 72 58.3
CARHR014860 Cardamine hirsuta HOM05D000131 ORTHO05D000086 6.6e-19 97.1 72 62.5
A06p43530 Brassica napus HOM05D000131 ORTHO05D000086 4.2e-18 94.4 72 55.6
BraA06t27238Z Brassica rapa HOM05D000131 ORTHO05D000086 4.2e-18 94.4 72 55.6
CARHR145150 Cardamine hirsuta HOM05D000131 ORTHO05D000086 1.6e-17 92.4 67 61.2
BcaC06g34045 Brassica carinata HOM05D000131 ORTHO05D000086 2.1e-17 92.0 72 55.6
C07p33330 Brassica napus HOM05D000131 ORTHO05D000086 2.1e-17 92.0 72 55.6
BolC7t43843H Brassica oleracea HOM05D000131 ORTHO05D000086 2.1e-17 92.0 72 55.6
AT2G02720 Arabidopsis thaliana HOM05D000131 ORTHO05D000086 6.1e-17 90.5 67 56.7
AL5G11910 Arabidopsis lyrata HOM05D000131 ORTHO05D000086 8.0e-17 90.1 67 61.2
BcaC06g31221 Brassica carinata HOM05D000131 ORTHO05D000086 2.6e-15 85.1 72 55.6
Carub.0005s0163 Capsella rubella HOM05D000131 ORTHO05D000086 5.7e-15 84.0 68 54.4
THA.LOC104801785 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 4.1e-13 77.8 69 52.2
Gohir.A04G015550 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.3e-11 72.0 55 56.4
Aa31LG2G7540 Aethionema arabicum HOM05D000131 ORTHO05D000086 3.9e-11 71.2 44 68.2
Gohir.D05G370500 Gossypium hirsutum HOM05D000131 ORTHO05D000086 3.9e-11 71.2 55 54.5
Gorai.009G438700 Gossypium raimondii HOM05D000131 ORTHO05D000086 3.9e-11 71.2 55 54.5
Duzib147G0289 Durio zibethinus HOM05D000131 ORTHO05D000086 6.6e-11 70.5 55 52.7
Gohir.D05G370800 Gossypium hirsutum HOM05D000131 ORTHO05D000086 6.6e-11 70.5 55 56.4
Gorai.009G439300 Gossypium raimondii HOM05D000131 ORTHO05D000086 6.6e-11 70.5 55 56.4
Gohir.A04G016100 Gossypium hirsutum HOM05D000131 ORTHO05D000086 8.6e-11 70.1 55 52.7
Gohir.D02G202100 Gossypium hirsutum HOM05D000131 ORTHO05D000086 1.5e-10 69.3 53 56.6
Gorai.005G227000 Gossypium raimondii HOM05D000131 ORTHO05D000086 1.5e-10 69.3 53 56.6
Gohir.A03G181500 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.5e-10 68.6 53 54.7
Gohir.A01G058300 Gossypium hirsutum HOM05D000131 ORTHO05D000086 3.3e-10 68.2 53 54.7
Gohir.D01G044600 Gossypium hirsutum HOM05D000131 ORTHO05D000086 3.3e-10 68.2 50 58.0
Gorai.002G064100 Gossypium raimondii HOM05D000131 ORTHO05D000086 3.3e-10 68.2 50 58.0
Gorai.009G439800 Gossypium raimondii HOM05D000131 ORTHO05D000086 7.3e-10 67.0 55 52.7
Gorai.009G439500 Gossypium raimondii HOM05D000131 ORTHO05D000086 2.1e-09 65.5 55 52.7
Duzib251G0120 Durio zibethinus HOM05D000131 ORTHO05D000086 3.6e-09 64.7 61 42.6
Duzib187G1451 Durio zibethinus HOM05D000131 ORTHO05D000086 4.7e-09 64.3 53 52.8
Aa31LG1G640 Aethionema arabicum HOM05D000131 ORTHO05D000086 2.3e-08 62.0 69 46.4
Aqoxy3G00751 Aquilegia oxysepala HOM05D000131 ORTHO05D000086 2.3e-08 62.0 59 45.8
Duzib264G0102 Durio zibethinus HOM05D000131 ORTHO05D000086 4.0e-08 61.2 58 43.1
PSO017G2562 Papaver somniferum HOM05D000131 ORTHO05D000086 4.0e-08 61.2 61 44.3
PSO478G1286 Papaver somniferum HOM05D000131 ORTHO05D000086 4.0e-08 61.2 61 44.3
vmacro01231 Vaccinium macrocarpon HOM05D000131 ORTHO05D000086 4.0e-08 61.2 59 44.1
MELO3C009891.2 Cucumis melo HOM05D000131 ORTHO05D000086 5.2e-08 60.8 56 46.4
CsaV3_3G041700 Cucumis sativus L. HOM05D000131 ORTHO05D000086 6.8e-08 60.5 59 44.1
Gorai.006G037300 Gossypium raimondii HOM05D000131 ORTHO05D000086 8.9e-08 60.1 53 45.3
unitig_899.g15506 Utricularia gibba HOM05D000131 ORTHO05D000086 8.9e-08 60.1 60 45.0
PGR119G1359 Punica granatum HOM05D000131 ORTHO05D000086 1.5e-07 59.3 54 46.3
Migut.H00891 Erythranthe guttata HOM05D000131 ORTHO05D000086 2.0e-07 58.9 54 42.6
Potri.008G148800 Populus trichocarpa HOM05D000131 ORTHO05D000086 2.0e-07 58.9 62 41.9
COL.COLO4_25167 Corchorus olitorius HOM05D000131 ORTHO05D000086 2.6e-07 58.5 53 45.3
Sed0004596 Sechium edule HOM05D000131 ORTHO05D000086 2.6e-07 58.5 54 46.3
QL02p080671 Quercus lobata HOM05D000131 ORTHO05D000086 3.4e-07 58.2 51 45.1
Duzib248G1631 Durio zibethinus HOM05D000131 ORTHO05D000086 4.4e-07 57.8 55 41.8
Eucgr.G02541 Eucalyptus grandis HOM05D000131 ORTHO05D000086 4.4e-07 57.8 56 44.6
Gohir.D09G021000 Gossypium hirsutum HOM05D000131 ORTHO05D000086 4.4e-07 57.8 53 43.4
Gohir.D09G032366 Gossypium hirsutum HOM05D000131 ORTHO05D000086 4.4e-07 57.8 57 43.9
TAR622G0931 Trochodendron aralioides HOM05D000131 ORTHO05D000086 4.4e-07 57.8 57 45.6
Thecc.02G354500 Theobroma cacao HOM05D000131 ORTHO05D000086 5.8e-07 57.4 55 40.0
Thecc.04G075400 Theobroma cacao HOM05D000131 ORTHO05D000086 5.8e-07 57.4 58 44.8
GSVIVG01020068001 Vitis vinifera HOM05D000131 ORTHO05D000086 5.8e-07 57.4 57 38.6
ClCG10G014830 Citrullus lanatus HOM05D000131 ORTHO05D000086 7.5e-07 57.0 59 40.7
Lj7C401T6 Lonicera japonica HOM05D000131 ORTHO05D000086 7.5e-07 57.0 58 44.8
CSS0025618 Camellia sinensis var. sinensis HOM05D000131 ORTHO05D000086 9.8e-07 56.6 61 37.7
Gohir.A13G071400 Gossypium hirsutum HOM05D000131 ORTHO05D000086 9.8e-07 56.6 56 39.3
Gohir.D13G068100 Gossypium hirsutum HOM05D000131 ORTHO05D000086 9.8e-07 56.6 56 39.3
Gorai.013G077600 Gossypium raimondii HOM05D000131 ORTHO05D000086 9.8e-07 56.6 56 39.3
Manes.01G189700 Manihot esculenta HOM05D000131 ORTHO05D000086 9.8e-07 56.6 59 44.1
SalBow1G6700 Salvia bowleyana HOM05D000131 ORTHO05D000086 1.3e-06 56.2 54 40.7
Cfa007515 Carpinus fangiana HOM05D000131 ORTHO05D000086 1.7e-06 55.8 50 44.0
Dinv06517 Davidia involucrata HOM05D000131 ORTHO05D000086 1.7e-06 55.8 58 39.7
EL10Ac6g13157 Beta vulgaris HOM05D000131 ORTHO05D000086 2.9e-06 55.1 54 46.3
Gohir.A11G069200 Gossypium hirsutum HOM05D000131 ORTHO05D000086 3.7e-06 54.7 56 48.2
Gorai.006G024800 Gossypium raimondii HOM05D000131 ORTHO05D000086 3.7e-06 54.7 53 41.5
QL03p065544 Quercus lobata HOM05D000131 ORTHO05D000086 3.7e-06 54.7 55 40.0
Haze_14580 Corylus avellana HOM05D000131 ORTHO05D000086 4.9e-06 54.3 50 42.0
Gohir.A13G052200 Gossypium hirsutum HOM05D000131 ORTHO05D000086 4.9e-06 54.3 68 32.4
Gohir.D11G073200 Gossypium hirsutum HOM05D000131 ORTHO05D000086 4.9e-06 54.3 56 48.2
Gorai.007G078600 Gossypium raimondii HOM05D000131 ORTHO05D000086 4.9e-06 54.3 56 48.2
Nn4g23058 Nelumbo nucifera HOM05D000131 ORTHO05D000086 4.9e-06 54.3 56 41.1
Aqoxy3G03279 Aquilegia oxysepala HOM05D000131 ORTHO05D000086 6.4e-06 53.9 54 44.4
Gohir.A04G148100 Gossypium hirsutum HOM05D000131 ORTHO05D000086 6.4e-06 53.9 61 36.1
Gohir.D13G068600 Gossypium hirsutum HOM05D000131 ORTHO05D000086 6.4e-06 53.9 68 33.8
Gorai.013G078300 Gossypium raimondii HOM05D000131 ORTHO05D000086 6.4e-06 53.9 68 33.8
Nn3g17138 Nelumbo nucifera HOM05D000131 ORTHO05D000086 6.4e-06 53.9 54 40.7
Ciclev10013750m.g Citrus clementina HOM05D000131 ORTHO05D000086 8.3e-06 53.5 55 40.0


User provided reference genes

Program Settings