Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 9.8e-161 570.1 288 100.0
C05p11460 Brassica napus HOM05D003025 ORTHO05D003305 7.3e-124 447.6 289 81.3
BcaC05g25272 Brassica carinata HOM05D003025 ORTHO05D003305 2.0e-113 412.9 280 78.2
A06p09750 Brassica napus HOM05D003025 ORTHO05D003305 2.7e-94 349.4 249 75.9
BraA06t24164Z Brassica rapa HOM05D003025 ORTHO05D003305 2.7e-94 349.4 249 76.3
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 9.7e-68 261.2 280 55.0
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 2.2e-43 180.3 323 41.8
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 8.8e-37 158.3 300 42.7
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 3.4e-36 156.4 322 37.0
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 3.4e-36 156.4 320 37.8
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 4.4e-36 156.0 306 41.5
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 4.4e-36 156.0 306 41.5
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 9.8e-36 154.8 316 38.0
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 3.7e-35 152.9 324 37.3
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 9.2e-34 148.3 377 35.3
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 2.7e-33 146.7 374 37.7
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 3.5e-33 146.4 332 38.3
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.1e-31 141.4 284 40.8
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 1.5e-31 141.0 357 36.4
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 1.6e-30 137.5 297 38.0
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 4.7e-30 136.0 291 39.9
Thhalv10008913m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 2.3e-29 133.7 176 48.9
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 3.0e-29 133.3 368 34.5
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 8.9e-29 131.7 352 33.5
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 4.9e-27 125.9 404 33.4
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 3.9e-24 116.3 427 31.1
AT1G13650 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 7.3e-23 112.1 218 40.4
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 4.7e-22 109.4 396 28.8
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 6.2e-22 109.0 393 30.5
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 6.2e-22 109.0 349 30.9
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.1e-21 106.7 391 28.6
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 8.9e-21 105.1 319 32.9
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.2e-20 104.8 391 28.4
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 3.4e-20 103.2 296 32.1
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 7.5e-20 102.1 393 28.8
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 9.8e-20 101.7 294 31.3
A09p24740 Brassica napus HOM05D003025 ORTHO05D003305 1.3e-19 101.3 260 35.8
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 2.2e-19 100.5 353 29.2
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 2.9e-19 100.1 377 29.2
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 4.9e-19 99.4 335 30.4
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.4e-18 97.1 303 32.0
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 2.4e-18 97.1 352 27.6
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 2.4e-18 97.1 332 30.1
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 3.2e-18 96.7 418 27.5
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 3.2e-18 96.7 406 29.1
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 4.1e-18 96.3 416 26.9
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 1.2e-17 94.7 404 27.5
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 1.6e-17 94.4 319 31.3
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 1.6e-17 94.4 305 32.1
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.6e-17 94.4 78 61.5
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 2.0e-17 94.0 359 27.6
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 4.6e-17 92.8 81 58.0
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.0e-16 91.7 403 26.8
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 1.0e-16 91.7 325 30.2
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 1.3e-16 91.3 373 27.6
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.3e-16 91.3 405 26.2
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 2.3e-16 90.5 384 28.6
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 3.0e-16 90.1 291 32.0
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 3.9e-16 89.7 89 55.1
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 3.9e-16 89.7 405 26.2
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 5.0e-16 89.4 309 28.2
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.6e-16 89.0 384 28.6
HanXRQChr16g0528681 Helianthus annuus HOM05D003025 ORTHO05D003305 6.6e-16 89.0 305 32.1
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 8.6e-16 88.6 81 59.3
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 1.9e-15 87.4 308 29.9
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 3.3e-15 86.7 78 57.7
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 5.6e-15 85.9 308 29.5
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 9.5e-15 85.1 348 27.3
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.5e-15 85.1 384 28.9
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 1.6e-14 84.3 90 54.4
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 1.6e-14 84.3 69 60.9
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 4.7e-14 82.8 149 38.9
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 6.2e-14 82.4 80 55.0
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 6.2e-14 82.4 81 51.9
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 6.2e-14 82.4 81 51.9
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 6.2e-14 82.4 356 29.2
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 6.2e-14 82.4 317 26.8
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 8.1e-14 82.0 115 44.3
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 8.1e-14 82.0 170 38.8
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 1.1e-13 81.6 161 37.9
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.1e-13 81.6 94 51.1
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 1.4e-13 81.3 342 26.9
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 1.4e-13 81.3 81 53.1
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 1.8e-13 80.9 338 25.7
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.3e-13 80.5 83 56.6
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 4.0e-13 79.7 384 24.2
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 4.0e-13 79.7 262 32.1
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 4.0e-13 79.7 340 26.5
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 5.2e-13 79.3 365 26.6
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 5.2e-13 79.3 78 56.4
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 6.8e-13 79.0 85 50.6
unitig_52.g17161 Utricularia gibba HOM05D003025 ORTHO05D003305 6.8e-13 79.0 83 53.0
Migut.E00253 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.2e-12 78.2 90 55.6
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 1.2e-12 78.2 364 25.8
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 1.2e-12 78.2 395 24.6
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 1.5e-12 77.8 374 27.3
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.5e-12 77.8 371 27.2
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 1.5e-12 77.8 85 47.1
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 2.0e-12 77.4 81 50.6
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 2.0e-12 77.4 349 25.8
AL1G25440 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 3.4e-12 76.6 149 38.3
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 3.4e-12 76.6 153 38.6
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 4.4e-12 76.3 345 27.5
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 4.4e-12 76.3 67 56.7
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 5.8e-12 75.9 363 29.8
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 5.8e-12 75.9 341 27.6
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 5.8e-12 75.9 82 53.7
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 7.5e-12 75.5 394 24.4
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 1.3e-11 74.7 81 54.3
MSTRG.13475 Avicennia marina HOM05D003025 ORTHO05D003305 1.7e-11 74.3 80 48.8
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 1.7e-11 74.3 365 25.8
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 1.7e-11 74.3 419 26.3
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 1.7e-11 74.3 80 50.0
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 3.7e-11 73.2 364 26.4
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 3.7e-11 73.2 395 24.3
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 3.7e-11 73.2 122 40.2
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 4.9e-11 72.8 277 28.5
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 6.4e-11 72.4 67 56.7
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 6.4e-11 72.4 319 26.6
ECA234G4845 Erigeron canadensis HOM05D003025 ORTHO05D003305 8.3e-11 72.0 300 28.7
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 1.1e-10 71.6 84 47.6
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 1.4e-10 71.2 81 46.9
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 1.4e-10 71.2 319 26.0
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 1.9e-10 70.9 106 44.3
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 2.4e-10 70.5 81 46.9
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 3.2e-10 70.1 323 27.9
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 3.2e-10 70.1 240 30.0
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 3.2e-10 70.1 327 27.2
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 3.2e-10 70.1 263 30.4
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 4.1e-10 69.7 69 52.2
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 7.1e-10 68.9 115 38.3
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 9.2e-10 68.6 257 28.8
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 9.2e-10 68.6 84 47.6
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 9.2e-10 68.6 345 25.8
Oeu021806.1 Olea europaea HOM05D003025 ORTHO05D003305 1.2e-09 68.2 409 24.2
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 1.2e-09 68.2 64 57.8
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 1.2e-09 68.2 83 48.2
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 1.6e-09 67.8 86 48.8
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 2.1e-09 67.4 86 50.0
GSVIVG01008155001 Vitis vinifera HOM05D003025 ORTHO05D003305 2.1e-09 67.4 77 48.1
unitig_21.g20865 Utricularia gibba HOM05D001307 ORTHO05D001158 3.5e-09 66.6 217 30.4
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 4.6e-09 66.2 278 26.3
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 7.8e-09 65.5 66 51.5
BraA09t38060Z Brassica rapa HOM05D003025 ORTHO05D003305 1.0e-08 65.1 138 39.1
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 1.7e-08 64.3 376 26.3
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 1.7e-08 64.3 55 56.4
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 3.0e-08 63.5 230 30.0
unitig_8.g3969 Utricularia gibba HOM05D003025 ORTHO05D003305 3.0e-08 63.5 83 41.0
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 3.9e-08 63.2 155 31.0
CDE10G0686 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 6.6e-08 62.4 205 29.3
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 6.6e-08 62.4 235 31.1
FAN13G2721 Fragaria x ananassa HOM05D003025 ORTHO05D003305 8.6e-08 62.0 64 48.4
Lsat_1_v5_gn_3_105000 Lactuca sativa HOM05D003025 ORTHO05D003305 1.1e-07 61.6 264 26.9
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.1e-07 61.6 55 52.7
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 1.1e-07 61.6 292 27.1
HPP92_018243 Vanilla planifolia HOM05D003025 ORTHO05D003305 1.5e-07 61.2 57 49.1
BolC2t11264H Brassica oleracea HOM05D003025 ORTHO05D003305 1.9e-07 60.8 164 34.1
Duzib205G1035 Durio zibethinus HOM05D003025 ORTHO05D003305 2.5e-07 60.5 65 49.2
CDE05G3645 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 3.3e-07 60.1 81 45.7
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 3.3e-07 60.1 63 52.4
Os02g0582100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 3.3e-07 60.1 65 52.3
ATR0691G160 Amborella trichopoda HOM05D003025 ORTHO05D003305 4.3e-07 59.7 361 25.5
A02p33640 Brassica napus HOM05D003025 ORTHO05D003305 4.3e-07 59.7 46 67.4
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 4.3e-07 59.7 84 42.9
FAN18G0971 Fragaria x ananassa HOM05D003025 ORTHO05D003305 4.3e-07 59.7 64 46.9
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 4.3e-07 59.7 275 26.5
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 4.3e-07 59.7 368 27.7
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 7.3e-07 58.9 274 25.9
Zm00001eb245390 Zea mays HOM05D003025 ORTHO05D003305 7.3e-07 58.9 53 54.7
FvH4_5g13400 Fragaria vesca HOM05D003025 ORTHO05D003305 9.5e-07 58.5 64 46.9
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.6e-06 57.8 41 70.7
Gohir.A07G058700 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.6e-06 57.8 62 48.4
Gohir.D07G063600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.6e-06 57.8 62 48.4
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.6e-06 57.8 62 48.4
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 1.6e-06 57.8 70 45.7
CDE02G2647 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 2.1e-06 57.4 81 44.4
BcaB03g16265 Brassica carinata HOM05D003025 ORTHO05D003305 2.8e-06 57.0 56 58.9
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 2.8e-06 57.0 53 56.6
ECA233G1104 Erigeron canadensis HOM05D003025 ORTHO05D003305 3.6e-06 56.6 64 46.9
SEGI_24332 Sequoiadendron giganteum HOM05D066507 ORTHO05D003305 3.6e-06 56.6 81 42.0
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 6.2e-06 55.8 51 52.9


User provided reference genes

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