Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 1.2e-184 651.0 816 100.0
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 1.0e-122 445.3 277 83.8
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 1.5e-121 441.4 277 80.5
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 1.5e-118 431.4 455 78.2
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 3.4e-118 430.3 455 77.1
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 3.4e-118 430.3 455 77.4
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 4.6e-115 419.9 447 77.9
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.9e-113 414.5 276 75.7
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 1.9e-113 414.5 280 77.1
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 3.7e-112 410.2 455 69.0
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 3.1e-95 354.0 282 66.0
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 5.3e-95 353.2 280 66.1
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 1.1e-63 249.2 276 49.3
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 4.1e-63 247.3 276 49.6
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 1.2e-62 245.7 276 49.3
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 3.8e-61 240.7 225 55.1
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 5.0e-61 240.4 265 48.3
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 6.6e-61 240.0 265 48.7
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 9.5e-60 236.1 266 48.9
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 2.3e-58 231.5 278 47.1
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 6.8e-58 229.9 268 46.3
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 8.9e-58 229.6 271 46.9
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 2.0e-57 228.4 224 51.8
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 7.5e-57 226.5 259 47.9
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 2.2e-56 224.9 264 47.3
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 1.2e-54 219.2 244 46.3
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 3.5e-54 217.6 275 44.0
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 5.9e-54 216.9 126 82.5
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 5.9e-54 216.9 279 44.1
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 7.8e-54 216.5 244 45.9
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 6.6e-53 213.4 266 45.1
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 1.1e-52 212.6 266 45.1
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 1.2e-51 209.1 250 44.0
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 4.7e-51 207.2 258 44.6
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 6.1e-51 206.8 266 44.4
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 8.0e-51 206.5 286 43.0
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 6.8e-50 203.4 270 43.3
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 1.2e-49 202.6 246 45.1
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 1.3e-48 199.1 252 45.6
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 6.4e-48 196.8 263 42.6
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 2.4e-47 194.9 151 66.9
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 5.4e-47 193.7 267 41.6
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 9.2e-47 193.0 256 39.5
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 3.5e-46 191.0 269 43.1
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 4.6e-46 190.7 278 39.2
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 7.8e-46 189.9 254 40.2
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 6.6e-45 186.8 271 41.0
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 1.1e-44 186.0 199 49.2
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 2.5e-44 184.9 221 43.9
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.6e-43 182.2 270 41.1
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 2.8e-43 181.4 270 40.7
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 1.1e-42 179.5 385 47.8
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 3.1e-42 177.9 385 48.8
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 5.2e-42 177.2 262 39.3
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 6.8e-42 176.8 225 40.4
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 2.6e-41 174.9 256 38.3
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 3.4e-41 174.5 265 40.4
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 4.4e-41 174.1 206 44.2
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 2.4e-39 168.3 199 43.7
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 3.5e-38 164.5 256 45.3
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 1.7e-37 162.2 190 42.6
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 2.3e-37 161.8 271 36.5
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 2.3e-37 161.8 94 87.2
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 3.9e-37 161.0 206 41.3
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 6.6e-37 160.2 90 85.6
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 1.2e-35 156.0 193 44.0
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 4.7e-35 154.1 222 41.4
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 1.4e-34 152.5 188 41.0
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 5.8e-33 147.1 136 55.9
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 2.1e-30 138.7 155 43.9
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 1.4e-23 115.9 123 49.6
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 7.1e-23 113.6 153 43.8
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 7.1e-23 113.6 161 38.5
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 1.2e-22 112.8 104 55.8
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 2.5e-20 105.1 188 31.9
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 9.6e-20 103.2 134 37.3
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 2.8e-19 101.7 94 51.1
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 1.2e-17 96.3 94 47.9
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 1.4e-15 89.4 94 42.6
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 1.2e-14 86.3 95 45.3
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.2e-14 86.3 94 43.6
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 3.5e-14 84.7 143 35.7
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 7.8e-14 83.6 94 42.6
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 2.1e-11 75.5 186 29.0
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 2.8e-11 75.1 197 28.4
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 8.1e-11 73.6 194 27.3
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.1e-10 73.2 194 27.3
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 1.2e-09 69.7 169 27.8
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 2.0e-09 68.9 230 25.2
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 7.6e-09 67.0 169 24.3
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 1.4e-07 62.8 166 25.9
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 1.4e-07 62.8 165 29.1
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 2.4e-07 62.0 166 24.7
arahy.Tifrunner.gnm1.ann1.6HP7HZ Arachis hypogaea HOM05D002890 ORTHO05D009847 7.1e-07 60.5 176 25.0
Aqoxy3G02430 Aquilegia oxysepala HOM05D007291 ORTHO05D009038 9.3e-07 60.1 170 24.7
Solyc05g010780.1 Solanum lycopersicum HOM05D007623 ORTHO05D009641 1.2e-06 59.7 68 41.2
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 1.6e-06 59.3 169 26.6
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 1.6e-06 59.3 78 37.2
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 4.6e-06 57.8 185 23.8
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 6.0e-06 57.4 165 24.8
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 7.9e-06 57.0 181 23.8
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 7.9e-06 57.0 162 25.3


User provided reference genes

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