Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 9.0e-256 886.3 423 100.0
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.8e-243 845.5 423 95.3
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 6.7e-243 843.6 423 94.3
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 1.1e-240 836.3 423 93.4
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.4e-240 835.9 423 92.9
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.7e-238 828.9 423 92.4
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 2.9e-238 828.2 423 92.9
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 7.2e-237 823.5 423 91.0
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 2.0e-231 805.4 406 94.8
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 4.5e-231 804.3 405 95.3
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 1.0e-230 803.1 406 94.6
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 1.0e-230 803.1 405 95.1
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 1.2e-228 796.2 423 87.7
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 1.3e-225 786.2 423 86.8
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 5.7e-210 734.2 419 80.7
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 5.7e-210 734.2 418 80.6
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 9.8e-210 733.4 417 80.6
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 2.2e-209 732.3 417 80.1
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 4.9e-209 731.1 420 79.5
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 8.3e-209 730.3 417 79.9
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 2.4e-208 728.8 416 81.5
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.7e-207 725.3 417 79.9
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 4.5e-207 724.5 417 79.6
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 7.8e-207 723.8 417 79.1
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 7.8e-207 723.8 416 81.0
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 1.0e-206 723.4 418 78.7
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.0e-206 723.4 417 80.3
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.3e-206 722.2 417 79.4
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.9e-206 721.8 417 78.2
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 5.0e-206 721.1 420 79.0
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 6.6e-206 720.7 420 79.0
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 6.6e-206 720.7 420 79.5
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 1.5e-205 719.5 412 79.9
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 4.3e-205 718.0 417 79.9
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 4.3e-205 718.0 416 80.8
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 5.6e-205 717.6 417 79.1
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 5.6e-205 717.6 418 78.0
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.2e-204 716.5 418 77.5
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 2.8e-204 715.3 417 79.4
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 6.1e-204 714.1 417 78.4
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.0e-203 713.4 418 78.7
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.0e-203 713.4 416 78.8
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.0e-203 713.4 418 78.0
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 1.4e-203 713.0 422 78.2
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.4e-203 713.0 420 78.6
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.8e-203 712.6 416 78.8
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.0e-203 711.8 418 77.3
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 3.0e-203 711.8 420 78.6
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.9e-203 710.3 416 78.6
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 1.5e-202 709.5 421 77.7
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 4.4e-202 708.0 450 73.8
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 4.4e-202 708.0 418 77.0
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 5.7e-202 707.6 420 76.0
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.3e-201 706.4 417 77.2
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 2.2e-201 705.7 423 74.0
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 3.7e-201 704.9 422 76.1
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 3.7e-201 704.9 416 76.7
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 8.3e-201 703.7 418 76.6
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 1.4e-200 703.0 423 74.0
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 1.8e-200 702.6 418 75.8
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 3.2e-200 701.8 416 78.1
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 4.1e-200 701.4 423 74.0
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.2e-199 699.9 416 78.6
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.6e-199 699.5 443 74.3
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 2.0e-199 699.1 421 76.0
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 4.6e-199 698.0 443 74.0
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.8e-199 697.2 416 78.1
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 7.8e-199 697.2 418 75.4
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 7.8e-199 697.2 423 73.5
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.3e-198 696.4 420 73.1
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 1.3e-198 696.4 426 76.3
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.7e-198 696.0 416 78.1
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 1.7e-198 696.0 459 71.2
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 1.7e-198 696.0 423 73.3
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 3.9e-198 694.9 421 74.1
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 3.9e-198 694.9 414 78.0
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 5.0e-198 694.5 423 73.5
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 6.6e-198 694.1 420 72.9
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 8.6e-198 693.7 420 73.6
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 1.1e-197 693.3 419 76.1
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 2.5e-197 692.2 423 73.3
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 3.3e-197 691.8 423 72.6
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 7.3e-197 690.6 396 81.8
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 2.3e-195 685.6 417 73.6
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 5.8e-194 681.0 421 74.8
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 2.2e-193 679.1 418 74.4
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 2.9e-193 678.7 417 74.3
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 6.4e-193 677.6 418 74.4
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 1.1e-192 676.8 417 74.1
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.9e-192 676.0 419 74.2
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 2.0e-191 672.5 399 77.7
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 1.0e-190 670.2 502 63.9
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 1.5e-189 666.4 423 70.4
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 1.9e-189 666.0 396 77.3
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 4.3e-189 664.8 419 73.3
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 2.8e-188 662.1 454 67.4
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 6.2e-188 661.0 411 73.0
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 6.2e-188 661.0 423 69.7
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 1.8e-187 659.4 430 71.9
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 4.4e-186 654.8 435 72.0
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 6.4e-185 651.0 425 68.9
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 8.3e-185 650.6 426 68.8
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 3.2e-184 648.7 403 75.7
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 7.1e-184 647.5 406 73.9
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 2.7e-183 645.6 459 68.2
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 1.1e-179 633.6 428 69.6
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 7.6e-178 627.5 420 69.0
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 9.2e-176 620.5 399 73.9
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 6.0e-175 617.8 417 70.0
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.2e-162 577.0 421 64.4
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 1.5e-162 576.6 418 65.3
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 8.4e-161 570.9 373 73.2
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 8.4e-161 570.9 420 62.4
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 1.6e-159 566.6 417 65.7
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 2.3e-158 562.8 359 70.5
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 1.3e-156 557.0 420 62.4
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 4.8e-156 555.1 300 82.0
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 1.9e-152 543.1 416 64.4
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.0e-146 523.1 436 61.7
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 3.2e-144 515.8 361 66.8
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 4.5e-138 495.4 421 54.2
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 3.4e-130 469.2 325 68.6
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 2.5e-120 436.4 461 52.3
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 3.2e-120 436.0 463 51.6
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 1.0e-118 431.0 474 46.6
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 2.0e-117 426.8 471 46.7
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 3.1e-107 392.9 427 48.5
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 3.6e-47 193.4 115 73.0
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 2.9e-36 157.1 90 83.3
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 2.9e-36 157.1 90 83.3
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 4.0e-30 136.7 94 68.1
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.0e-29 134.4 115 54.8
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 2.5e-27 127.5 100 59.0
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 3.5e-26 123.6 68 86.8
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 1.8e-25 121.3 66 84.8
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 3.0e-25 120.6 68 85.3
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 1.5e-24 118.2 68 83.8
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 3.2e-19 100.5 136 45.6
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.4e-17 95.1 55 72.7
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 7.4e-08 62.8 234 27.4
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 2.2e-07 61.2 36 69.4
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 3.1e-06 57.4 121 30.6


User provided reference genes

Program Settings