Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 5.0e-60 234.2 113 100.0
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 8.2e-55 216.9 113 92.9
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 8.2e-55 216.9 113 92.9
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 2.6e-53 211.8 113 90.3
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 2.6e-53 211.8 113 90.3
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 2.6e-53 211.8 113 90.3
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 3.7e-47 191.4 114 84.2
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 4.8e-47 191.0 113 82.3
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 5.3e-46 187.6 111 81.1
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 5.3e-46 187.6 114 82.5
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 7.7e-45 183.7 111 82.0
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 7.7e-45 183.7 111 82.0
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 7.7e-45 183.7 111 82.0
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 1.9e-43 179.1 113 78.8
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 5.5e-43 177.6 114 78.9
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 1.6e-42 176.0 114 78.9
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 2.1e-42 175.6 114 78.9
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 4.7e-42 174.5 105 80.0
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 1.4e-41 172.9 105 80.0
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 1.4e-41 172.9 105 80.0
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 1.8e-41 172.6 105 79.0
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 1.2e-37 159.8 77 100.0
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 1.0e-36 156.8 113 73.5
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 6.1e-34 147.5 113 67.3
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 1.5e-24 116.3 70 77.1
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 4.6e-21 104.8 81 58.0
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 2.3e-20 102.4 104 48.1
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 1.1e-19 100.1 111 45.9
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 1.6e-18 96.3 97 47.4
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 2.1e-18 95.9 110 44.5
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 4.7e-18 94.7 97 49.5
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 2.3e-17 92.4 102 43.1
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 2.3e-17 92.4 96 46.9
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 2.3e-17 92.4 83 47.0
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 3.1e-17 92.0 103 44.7
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 4.0e-17 91.7 98 45.9
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 4.0e-17 91.7 101 51.5
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 5.2e-17 91.3 98 45.9
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.2e-16 90.1 106 43.4
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 2.0e-16 89.4 81 48.1
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 2.0e-16 89.4 98 44.9
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 2.0e-16 89.4 78 52.6
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 2.6e-16 89.0 106 44.3
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 3.4e-16 88.6 102 46.1
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 4.4e-16 88.2 82 46.3
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 7.5e-16 87.4 99 43.4
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 7.5e-16 87.4 113 39.8
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 1.7e-15 86.3 72 50.0
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 3.7e-15 85.1 111 41.4
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 6.4e-15 84.3 111 41.4
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 6.4e-15 84.3 111 41.4
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 8.3e-15 84.0 93 41.9
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 8.3e-15 84.0 99 45.5
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 1.1e-14 83.6 82 48.8
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 1.4e-14 83.2 79 48.1
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.9e-14 82.8 101 42.6
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.9e-14 82.8 71 53.5
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 1.9e-14 82.8 100 43.0
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 7.0e-14 80.9 78 46.2
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 7.0e-14 80.9 103 39.8
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 7.0e-14 80.9 72 44.4
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 9.2e-14 80.5 103 39.8
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 9.2e-14 80.5 103 39.8
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 1.2e-13 80.1 98 44.9
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 1.6e-13 79.7 101 39.6
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 3.5e-13 78.6 74 50.0
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 1.0e-12 77.0 70 48.6
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.3e-12 76.6 69 49.3
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 1.3e-12 76.6 60 53.3
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 3.9e-12 75.1 104 41.3
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 5.0e-12 74.7 82 43.9
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 6.6e-12 74.3 111 38.7
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 8.6e-12 73.9 109 33.9
BolC8t49147H Brassica oleracea HOM05D007926 ORTHO05D009983 7.3e-11 70.9 37 89.2
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 1.8e-09 66.2 110 33.6
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 8.9e-09 63.9 111 33.3
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 5.8e-08 61.2 87 37.9
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 1.3e-07 60.1 76 39.5
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 1.7e-07 59.7 66 42.4
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 1.7e-07 59.7 58 41.4
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 6.4e-07 57.8 64 42.2


User provided reference genes

Program Settings