Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06408 Brassica carinata HOM05D009328 ORTHO05D008690 4.2e-234 814.3 409 100.0
BcaB02g06406 Brassica carinata HOM05D009328 ORTHO05D008690 2.3e-203 712.2 409 90.0
C05p11050 Brassica napus HOM05D009328 ORTHO05D008690 6.2e-177 624.4 441 77.8
BolC5t29847H Brassica oleracea HOM05D009328 ORTHO05D008690 1.1e-176 623.6 421 80.3
BraA06t24123Z Brassica rapa HOM05D009328 ORTHO05D008690 1.4e-165 586.6 451 72.5
A06p09350 Brassica napus HOM05D009328 ORTHO05D008690 2.4e-165 585.9 452 72.6
Thhalv10007497m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 9.6e-146 520.8 460 66.1
Sp1g10800 Schrenkiella parvula HOM05D009328 ORTHO05D008690 1.2e-140 503.8 464 65.3
BraA09t41754Z Brassica rapa HOM05D009328 ORTHO05D008690 1.4e-136 490.3 423 66.2
A09p64080 Brassica napus HOM05D009328 ORTHO05D008690 1.5e-135 486.9 423 66.0
Carub.0001s1181 Capsella rubella HOM05D009328 ORTHO05D008690 2.7e-132 476.1 471 62.4
AL1G23390 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 5.1e-131 471.9 471 61.8
AT1G12120 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 1.4e-128 463.8 464 61.9
BcaC07g41729 Brassica carinata HOM05D009328 ORTHO05D008690 4.7e-124 448.7 430 62.3
C08p47680 Brassica napus HOM05D009328 ORTHO05D008690 3.9e-123 445.7 426 62.7
BcaB03g13206 Brassica carinata HOM05D009328 ORTHO05D008690 6.7e-123 444.9 452 61.5
CARHR012480 Cardamine hirsuta HOM05D009328 ORTHO05D008690 1.5e-122 443.7 474 60.1
BolC8t52307H Brassica oleracea HOM05D009328 ORTHO05D008690 5.7e-122 441.8 425 62.6
C08p15230 Brassica napus HOM05D009328 ORTHO05D008690 7.4e-122 441.4 418 63.6
BolC8t49153H Brassica oleracea HOM05D009328 ORTHO05D008690 7.4e-122 441.4 418 63.6
A08p32980 Brassica napus HOM05D009328 ORTHO05D008690 1.1e-120 437.6 418 64.1
BraA08t35218Z Brassica rapa HOM05D009328 ORTHO05D008690 4.1e-120 435.6 418 63.6
Aa31LG1G2600 Aethionema arabicum HOM05D009328 ORTHO05D008690 5.4e-80 302.4 470 45.5
BcaNung05495 Brassica carinata HOM05D009328 ORTHO05D008690 4.9e-65 252.7 331 51.4
THA.LOC104823548 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 1.9e-61 240.7 473 41.9
THA.LOC104818527 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 1.6e-60 237.7 472 43.2
Sp2g02060 Schrenkiella parvula HOM05D009328 ORTHO05D008690 6.2e-60 235.7 412 43.0
AT1G62530 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 4.3e-45 186.4 391 38.6
Thhalv10024007m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 1.2e-42 178.3 406 36.7
Carub.0002s0245 Capsella rubella HOM05D009328 ORTHO05D008690 1.3e-41 174.9 408 38.0
AL2G13340 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 2.2e-33 147.5 231 47.6
MD04G1085400 Malus domestica HOM05D007929 ORTHO05D008690 1.9e-24 117.9 257 38.5
COL.COLO4_37202 Corchorus olitorius HOM05D007929 ORTHO05D008690 3.5e-23 113.6 143 49.7
Haze_07866 Corylus avellana HOM05D007929 ORTHO05D008690 3.5e-23 113.6 147 51.0
Thecc.03G256000 Theobroma cacao HOM05D007929 ORTHO05D008690 3.5e-23 113.6 170 42.9
Manes.01G077200 Manihot esculenta HOM05D007929 ORTHO05D008690 6.1e-23 112.8 258 36.4
MD06G1062900 Malus domestica HOM05D007929 ORTHO05D008690 1.0e-22 112.1 154 48.7
ClCG01G003880 Citrullus lanatus HOM05D007929 ORTHO05D008690 2.3e-22 110.9 151 43.0
TWI60G0818 Tripterygium wilfordii HOM05D007929 ORTHO05D008690 1.9e-21 107.8 147 49.0
Sabra01G0093400 Salix brachista HOM05D007929 ORTHO05D008690 2.5e-21 107.5 147 49.0
Sabra03G0077700 Salix brachista HOM05D007929 ORTHO05D008690 2.5e-21 107.5 144 48.6
Potri.003G112000 Populus trichocarpa HOM05D007929 ORTHO05D008690 3.3e-21 107.1 171 42.7
Duzib068G0525 Durio zibethinus HOM05D007929 ORTHO05D008690 5.7e-21 106.3 145 47.6
Dinv39112 Davidia involucrata HOM05D007929 ORTHO05D008690 1.6e-20 104.8 203 40.4
Hma1.2p1_1720F.1_g299295 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 1.6e-20 104.8 183 41.0
Hma1.2p1_1720F.1_g299300 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 1.6e-20 104.8 183 41.0
RcHm_v2.0_Chr7g0202661 Rosa chinensis HOM05D007929 ORTHO05D008690 1.6e-20 104.8 149 45.6
Duzib084G1023 Durio zibethinus HOM05D007929 ORTHO05D008690 2.2e-20 104.4 200 40.5
Prupe.5G074300 Prunus persica HOM05D007929 ORTHO05D008690 3.7e-20 103.6 148 46.6
Actinidia05192 Actinidia chinensis HOM05D007929 ORTHO05D008690 6.3e-20 102.8 148 46.6
Cfa021312 Carpinus fangiana HOM05D007929 ORTHO05D008690 8.2e-20 102.4 160 45.0
Ciclev10019204m.g Citrus clementina HOM05D007929 ORTHO05D008690 8.2e-20 102.4 247 37.7
Dinv21608 Davidia involucrata HOM05D007929 ORTHO05D008690 8.2e-20 102.4 230 38.7
FAN08G2103 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.1e-19 102.1 149 47.0
Potri.001G121200 Populus trichocarpa HOM05D007929 ORTHO05D008690 1.1e-19 102.1 184 41.8
Eucgr.E00452 Eucalyptus grandis HOM05D007929 ORTHO05D008690 1.4e-19 101.7 206 37.9
Gorai.004G199400 Gossypium raimondii HOM05D007929 ORTHO05D008690 1.8e-19 101.3 142 47.9
Sed0000260 Sechium edule HOM05D007929 ORTHO05D008690 1.8e-19 101.3 147 46.3
Gohir.D08G189300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 2.4e-19 100.9 142 47.9
Hund14599 Selenicereus undatus HOM05D007929 ORTHO05D008690 3.1e-19 100.5 340 29.1
Manes.02G036501 Manihot esculenta HOM05D007929 ORTHO05D008690 4.1e-19 100.1 293 33.4
QL12p013187 Quercus lobata HOM05D007929 ORTHO05D008690 4.1e-19 100.1 145 48.3
vmacro14098 Vaccinium macrocarpon HOM05D007929 ORTHO05D008690 6.9e-19 99.4 312 31.4
CiPaw.12G107500 Carya illinoinensis HOM05D007929 ORTHO05D008690 9.0e-19 99.0 150 46.0
FAN13G1817 Fragaria x ananassa HOM05D007929 ORTHO05D008690 9.0e-19 99.0 149 46.3
FvH4_5g00200 Fragaria vesca HOM05D007929 ORTHO05D008690 1.2e-18 98.6 149 45.6
FAN18G3609 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.2e-18 98.6 149 45.6
Rhsim07G0105500 Rhododendron simsii HOM05D007929 ORTHO05D008690 2.0e-18 97.8 150 42.7
Gohir.D12G221300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 2.6e-18 97.4 170 38.8
Gorai.008G237100 Gossypium raimondii HOM05D007929 ORTHO05D008690 2.6e-18 97.4 170 38.8
Gohir.A08G171000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 3.4e-18 97.1 194 39.7
Actinidia27458 Actinidia chinensis HOM05D007929 ORTHO05D008690 4.5e-18 96.7 149 47.0
Gohir.A12G219000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 4.5e-18 96.7 170 39.4
CsaV3_5G004010 Cucumis sativus L. HOM05D007929 ORTHO05D008690 1.0e-17 95.5 198 35.9
MELO3C005557.2 Cucumis melo HOM05D007929 ORTHO05D008690 1.3e-17 95.1 148 39.9
FAN04G0968 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.7e-17 94.7 149 45.6
Lsat_1_v5_gn_6_1860 Lactuca sativa HOM05D007929 ORTHO05D008690 1.7e-17 94.7 136 52.2
DCAR_027794 Daucus carota HOM05D007929 ORTHO05D008690 2.2e-17 94.4 258 31.8
AUR62039940 Chenopodium quinoa HOM05D007929 ORTHO05D008690 2.9e-17 94.0 144 44.4
Duzib205G1039 Durio zibethinus HOM05D007929 ORTHO05D008690 5.0e-17 93.2 203 38.4
Sc22g0000740 Simmondsia chinensis HOM05D007929 ORTHO05D008690 5.0e-17 93.2 151 43.0
EL10Ac5g13019 Beta vulgaris HOM05D007929 ORTHO05D008690 2.5e-16 90.9 139 41.0
HanXRQChr13g0394961 Helianthus annuus HOM05D007929 ORTHO05D008690 5.5e-16 89.7 121 47.9
AUR62007484 Chenopodium quinoa HOM05D007929 ORTHO05D008690 9.4e-16 89.0 144 43.1
ECA233G5449 Erigeron canadensis HOM05D007929 ORTHO05D008690 2.1e-15 87.8 155 43.9
arahy.Tifrunner.gnm1.ann1.S80PKI Arachis hypogaea HOM05D007929 ORTHO05D008690 6.1e-15 86.3 148 43.2
MSTRG.25535 Avicennia marina HOM05D007929 ORTHO05D008690 7.9e-15 85.9 155 39.4
Nn6g34027 Nelumbo nucifera HOM05D007929 ORTHO05D008690 1.0e-14 85.5 205 38.0
BcaNung05497 Brassica carinata HOM05D009328 ORTHO05D008690 1.4e-14 85.1 94 56.4
Oeu029333.1 Olea europaea HOM05D007929 ORTHO05D008690 1.8e-14 84.7 206 35.4
Sopen08g027490 Solanum pennellii HOM05D007929 ORTHO05D008690 1.8e-14 84.7 97 49.5
Nn1g01073 Nelumbo nucifera HOM05D007929 ORTHO05D008690 2.3e-14 84.3 204 38.2
Peaxi162Scf00002g00920 Petunia axillaris HOM05D007929 ORTHO05D008690 2.3e-14 84.3 155 40.0
CAN.G1217.13 Capsicum annuum HOM05D007929 ORTHO05D008690 1.1e-13 82.0 278 33.1
Solyc08g079030.4 Solanum lycopersicum HOM05D007929 ORTHO05D008690 1.1e-13 82.0 97 49.5
MBI04_g37591_MAGBIO Magnolia biondii HOM05D007929 ORTHO05D008690 2.5e-13 80.9 192 36.5
Nitab4.5_0009716g0010 Nicotiana tabacum HOM05D007929 ORTHO05D008690 2.5e-13 80.9 250 31.2
Ah.12g056550 Amaranthus hybridus HOM05D007929 ORTHO05D008690 7.4e-13 79.3 139 38.8
PGSC0003DMG400004743 Solanum tuberosum HOM05D007929 ORTHO05D008690 4.8e-12 76.6 266 30.5
Migut.A00812 Erythranthe guttata HOM05D007929 ORTHO05D008690 8.2e-12 75.9 227 31.7
TAR374G1634 Trochodendron aralioides HOM05D007929 ORTHO05D008690 4.1e-11 73.6 155 37.4
Cc08_g12850 Coffea canephora HOM05D007929 ORTHO05D008690 2.0e-10 71.2 116 41.4
Nitab4.5_0000993g0050 Nicotiana tabacum HOM05D007929 ORTHO05D008690 5.9e-10 69.7 236 28.0
HPP92_007417 Vanilla planifolia HOM05D007929 ORTHO05D008690 1.0e-09 68.9 238 30.3
HPP92_015027 Vanilla planifolia HOM05D007929 ORTHO05D008690 1.3e-09 68.6 83 50.6
PGR004G1789 Punica granatum HOM05D001536 ORTHO05D001442 2.9e-09 67.4 135 33.3
Actinidia04855 Actinidia chinensis HOM05D001536 ORTHO05D001442 7.2e-08 62.8 269 24.2
Dinv11493 Davidia involucrata HOM05D001536 ORTHO05D001442 7.2e-08 62.8 171 31.6
AUR62008481 Chenopodium quinoa HOM05D001536 ORTHO05D001442 2.7e-07 60.8 258 27.9
Hma1.2p1_0060F.1_g033420 Hydrangea macrophylla HOM05D001536 ORTHO05D001442 6.1e-07 59.7 252 27.0
AUR62021612 Chenopodium quinoa HOM05D001536 ORTHO05D001442 7.9e-07 59.3 255 27.1
Duzib147G0949 Durio zibethinus HOM05D001536 ORTHO05D001442 1.8e-06 58.2 128 32.0
SalBow2G1415 Salvia bowleyana HOM05D001536 ORTHO05D001442 3.0e-06 57.4 208 28.4
SGA_v2.0_scaffold287G47150 Striga asiatica HOM05D001536 ORTHO05D001442 3.0e-06 57.4 250 27.2
CANSAT50G0006 Cannabis sativa HOM05D001536 ORTHO05D001442 3.9e-06 57.0 82 35.4
Gorai.003G099300 Gossypium raimondii HOM05D001536 ORTHO05D001442 3.9e-06 57.0 82 37.8
MD06G1199000 Malus domestica HOM05D001536 ORTHO05D001442 3.9e-06 57.0 84 41.7
CANSAT64G3017 Cannabis sativa HOM05D001536 ORTHO05D001442 8.8e-06 55.8 211 27.0
Haze_07670 Corylus avellana HOM05D001536 ORTHO05D001442 8.8e-06 55.8 82 37.8
HanXRQChr08g0211011 Helianthus annuus HOM05D001536 ORTHO05D001442 8.8e-06 55.8 161 31.1


User provided reference genes

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