Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 6.5e-165 583.9 288 100.0
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 3.6e-123 445.3 264 83.7
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.7e-118 429.1 282 78.4
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 6.0e-118 427.9 264 82.6
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 2.3e-117 426.0 264 82.2
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 2.3e-117 426.0 264 82.2
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 2.3e-117 426.0 264 82.2
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.7e-112 409.8 277 76.2
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 2.9e-112 409.1 278 77.0
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.4e-111 406.8 272 73.9
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.3e-109 400.2 287 72.1
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 8.7e-109 397.5 271 74.5
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 9.6e-108 394.0 273 75.8
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-107 393.3 277 71.8
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.6e-107 393.3 258 77.5
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 4.0e-106 388.7 272 72.4
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 5.3e-106 388.3 272 72.4
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 3.8e-104 382.1 272 71.0
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.6e-94 350.1 287 67.6
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 7.9e-94 347.8 288 67.7
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 2.5e-84 316.2 283 62.5
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.8e-82 310.1 296 60.8
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 3.1e-82 309.3 267 64.0
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.1e-66 257.7 283 54.1
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.8e-66 256.9 283 53.4
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.5e-65 253.8 287 52.6
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 6.1e-62 241.9 288 48.6
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.3e-61 240.0 282 52.8
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.5e-60 237.3 277 50.9
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.7e-59 233.8 280 50.0
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-58 231.1 275 51.3
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.8e-58 230.3 302 50.0
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 5.3e-58 228.8 274 50.0
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.0e-56 224.6 283 49.5
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 2.2e-56 223.4 271 52.0
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 5.0e-56 222.2 275 49.5
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 5.0e-56 222.2 275 49.5
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 2.7e-54 216.5 284 48.6
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.1e-46 190.3 278 48.2
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.0e-45 186.0 272 44.5
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 4.4e-44 182.6 281 43.4
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 2.4e-42 176.8 213 48.8
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 8.5e-40 168.3 314 38.5
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 8.5e-40 168.3 314 38.5
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 7.2e-39 165.2 294 38.4
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 2.1e-38 163.7 315 38.7
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 5.2e-37 159.1 307 39.7
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 2.0e-36 157.1 300 36.3
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 2.8e-35 153.3 313 38.7
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 6.3e-35 152.1 314 36.0
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 7.0e-34 148.7 306 38.2
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 2.7e-33 146.7 315 37.1
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 5.0e-32 142.5 290 38.3
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.6e-32 141.7 284 37.7
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.5e-31 140.2 296 34.5
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 4.3e-31 139.4 304 36.8
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 9.5e-31 138.3 277 36.8
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-30 137.1 92 71.7
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.8e-30 136.7 266 36.8
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 3.6e-30 136.3 299 36.8
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 6.1e-30 135.6 310 34.5
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 2.3e-29 133.7 308 36.4
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 5.2e-29 132.5 304 32.6
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 5.2e-29 132.5 299 37.8
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 8.9e-29 131.7 283 38.2
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 8.9e-29 131.7 280 35.7
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.5e-28 131.0 315 33.7
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.5e-28 131.0 278 35.3
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.5e-28 131.0 277 34.3
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 2.0e-28 130.6 290 36.9
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 2.6e-28 130.2 293 36.5
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 2.6e-28 130.2 280 35.4
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 9.8e-28 128.3 281 36.7
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 9.8e-28 128.3 304 35.5
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.3e-27 127.9 286 37.4
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.3e-27 127.9 272 34.9
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 1.7e-27 127.5 286 32.2
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.7e-27 127.5 304 33.9
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.2e-27 127.1 308 34.7
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.2e-27 127.1 326 34.7
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 2.9e-27 126.7 298 33.6
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 2.9e-27 126.7 264 36.7
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 3.7e-27 126.3 310 33.5
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 3.7e-27 126.3 301 35.5
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 3.7e-27 126.3 300 34.3
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 4.9e-27 125.9 262 35.5
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 6.4e-27 125.6 273 35.2
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 8.3e-27 125.2 291 35.7
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 2.4e-26 123.6 300 33.7
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.4e-26 123.6 300 34.0
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 3.2e-26 123.2 311 33.8
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 3.2e-26 123.2 293 34.1
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 4.1e-26 122.9 282 35.1
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 9.2e-26 121.7 286 34.6
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 9.2e-26 121.7 293 35.2
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 9.2e-26 121.7 280 37.5
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 1.6e-25 120.9 200 43.0
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 2.7e-25 120.2 274 36.1
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 2.7e-25 120.2 288 34.4
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.5e-25 119.8 285 34.0
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 3.5e-25 119.8 306 32.7
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 4.6e-25 119.4 313 31.9
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 7.8e-25 118.6 310 33.5
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 1.0e-24 118.2 284 34.9
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 3.0e-24 116.7 296 35.8
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.0e-24 116.7 273 35.2
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 5.0e-24 115.9 276 35.9
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 6.6e-24 115.5 309 33.0
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 8.6e-24 115.2 305 32.1
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 8.6e-24 115.2 293 32.8
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.1e-23 114.8 298 30.9
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 1.5e-23 114.4 263 35.7
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.9e-23 114.0 298 34.6
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 2.5e-23 113.6 294 33.0
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.3e-23 113.2 288 34.0
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.3e-23 112.8 309 35.0
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 5.6e-23 112.5 247 38.5
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 5.6e-23 112.5 282 34.0
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 4.7e-22 109.4 315 32.4
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 4.7e-22 109.4 274 32.8
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 6.2e-22 109.0 271 33.9
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 8.0e-22 108.6 173 46.2
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 8.0e-22 108.6 216 40.3
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.0e-21 108.2 316 30.7
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.0e-21 108.2 171 45.6
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.4e-21 107.8 268 33.6
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.8e-21 107.5 297 32.3
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.8e-21 107.5 285 32.6
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 6.8e-21 105.5 240 34.2
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 3.4e-20 103.2 293 32.1
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 5.8e-20 102.4 293 32.1
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 7.5e-20 102.1 182 43.4
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 7.5e-20 102.1 181 40.3
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.3e-19 101.3 211 35.5
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.3e-19 101.3 264 33.7
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.7e-19 100.9 274 33.2
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 2.2e-19 100.5 315 28.6
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 2.9e-19 100.1 173 43.9
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 1.1e-18 98.2 167 41.3
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 2.4e-18 97.1 111 49.5
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 3.2e-18 96.7 184 37.5
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 7.0e-18 95.5 289 30.4
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 7.0e-18 95.5 298 32.6
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.7e-17 93.6 269 31.6
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 2.7e-17 93.6 296 33.4
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 3.5e-17 93.2 280 29.3
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 7.8e-17 92.0 260 31.2
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.0e-16 91.7 288 28.8
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.3e-16 91.3 179 36.3
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 3.9e-16 89.7 297 29.3
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.1e-15 88.2 292 31.2
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 1.9e-15 87.4 97 49.5
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.5e-15 87.0 301 29.2
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 3.3e-15 86.7 240 35.8
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 9.5e-15 85.1 275 28.7
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 9.5e-15 85.1 256 32.0
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.6e-14 84.3 271 28.4
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.8e-14 83.6 265 27.9
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 3.6e-14 83.2 275 27.6
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.6e-14 83.2 256 31.6
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 1.4e-13 81.3 283 28.6
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.3e-13 80.5 184 33.2
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.0e-13 79.7 185 36.8
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.8e-13 79.0 263 30.0
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.8e-13 79.0 252 33.7
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.2e-12 78.2 284 28.2
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.5e-12 77.8 179 33.5
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 3.4e-12 76.6 183 34.4
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 3.4e-12 76.6 93 48.4
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 5.8e-12 75.9 95 44.2
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.7e-11 74.3 256 31.6
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.9e-11 73.6 260 27.7
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.1e-10 71.6 180 32.2
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.4e-10 71.2 262 27.5
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 1.4e-10 71.2 243 29.2
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.2e-09 68.2 72 52.8
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 3.5e-09 66.6 149 32.2
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 4.6e-09 66.2 96 42.7
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 1.3e-08 64.7 168 34.5
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.7e-08 64.3 256 29.7
unitig_0.g211 Utricularia gibba HOM05D003715 ORTHO05D003958 5.1e-08 62.8 260 26.9
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 1.5e-07 61.2 141 31.9


User provided reference genes

Program Settings