Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06369 Brassica carinata HOM05D002924 ORTHO05D003122 2.8e-58 228.4 115 100.0
BraA03t11175Z Brassica rapa HOM05D002924 ORTHO05D003122 6.0e-45 184.1 115 83.5
BcaC01g05788 Brassica carinata HOM05D002924 ORTHO05D003122 7.9e-45 183.7 115 82.6
C03p22400 Brassica napus HOM05D002924 ORTHO05D003122 7.9e-45 183.7 115 82.6
BolC3t14623H Brassica oleracea HOM05D002924 ORTHO05D003122 1.3e-44 183.0 115 81.7
A03p19200 Brassica napus HOM05D002924 ORTHO05D003122 1.6e-42 176.0 116 81.9
BcaC01g05787 Brassica carinata HOM05D002924 ORTHO05D003122 1.3e-36 156.4 101 81.2
BcaB06g28785 Brassica carinata HOM05D002924 ORTHO05D003122 2.7e-29 132.1 120 65.8
Sp4g16870 Schrenkiella parvula HOM05D002924 ORTHO05D003122 3.5e-29 131.7 120 68.3
BolC4t27859H Brassica oleracea HOM05D002924 ORTHO05D003122 1.1e-27 126.7 124 64.5
A04p26500 Brassica napus HOM05D002924 ORTHO05D003122 1.5e-27 126.3 122 65.6
C04p63920 Brassica napus HOM05D002924 ORTHO05D003122 1.5e-27 126.3 122 65.6
BraA04t18154Z Brassica rapa HOM05D002924 ORTHO05D003122 1.3e-26 123.2 122 64.8
AT2G34600 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 3.1e-25 118.6 131 58.0
CARHR128700 Cardamine hirsuta HOM05D002924 ORTHO05D003122 5.3e-25 117.9 126 60.3
A05p11050 Brassica napus HOM05D002924 ORTHO05D003122 4.5e-24 114.8 120 63.3
BraA05t20050Z Brassica rapa HOM05D002924 ORTHO05D003122 4.5e-24 114.8 120 63.3
BcaC02g11537 Brassica carinata HOM05D002924 ORTHO05D003122 1.7e-23 112.8 120 62.5
C04p14200 Brassica napus HOM05D002924 ORTHO05D003122 1.7e-23 112.8 120 62.5
BolC4t23009H Brassica oleracea HOM05D002924 ORTHO05D003122 1.7e-23 112.8 120 62.5
Carub.0004s1628 Capsella rubella HOM05D002924 ORTHO05D003122 1.4e-22 109.8 131 53.4
AL270U10010 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 2.5e-22 109.0 131 55.7
AL4G30580 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 3.2e-22 108.6 131 55.7
BcaB02g09523 Brassica carinata HOM05D002924 ORTHO05D003122 1.2e-21 106.7 120 59.2
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 4.1e-17 91.7 135 47.4
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 1.5e-16 89.7 128 47.7
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 2.0e-16 89.4 131 48.9
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 2.6e-16 89.0 130 46.2
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 2.6e-16 89.0 130 46.2
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 2.6e-16 89.0 130 46.2
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 2.6e-16 89.0 130 46.2
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 5.0e-15 84.7 130 44.6
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 8.5e-15 84.0 128 43.8
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 1.2e-13 80.1 132 43.2
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 3.6e-13 78.6 120 47.5
Carub.0001s2837 Capsella rubella HOM05D002924 ORTHO05D003122 2.3e-12 75.9 133 44.4
BcaB04g17519 Brassica carinata HOM05D002924 ORTHO05D003122 2.0e-11 72.8 68 67.6
BcaC05g27039 Brassica carinata HOM05D002924 ORTHO05D003122 4.3e-11 71.6 129 40.3
C05p28990 Brassica napus HOM05D002924 ORTHO05D003122 4.3e-11 71.6 129 40.3
BolC5t31621H Brassica oleracea HOM05D002924 ORTHO05D003122 4.3e-11 71.6 129 40.3
Thhalv10009598m.g Eutrema salsugineum HOM05D002924 ORTHO05D003122 9.7e-11 70.5 134 44.0
BcaB07g32615 Brassica carinata HOM05D002924 ORTHO05D003122 2.8e-10 68.9 132 40.2
C03p76460 Brassica napus HOM05D002924 ORTHO05D003122 2.8e-10 68.9 80 53.8
BraA09t39160Z Brassica rapa HOM05D002924 ORTHO05D003122 2.8e-10 68.9 130 40.0
A09p36360 Brassica napus HOM05D002924 ORTHO05D003122 1.8e-09 66.2 130 39.2
THA.LOC104814306 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 5.0e-07 58.2 146 36.3
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.1e-06 57.0 124 39.5
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.1e-06 57.0 125 37.6
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.2e-06 55.1 121 38.0
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 4.2e-06 55.1 130 34.6
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 5.5e-06 54.7 120 36.7
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 7.2e-06 54.3 115 38.3
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 9.4e-06 53.9 123 35.0


User provided reference genes

Program Settings