Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 2.1e-169 599.0 312 100.0
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 2.1e-137 492.7 275 91.3
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 2.1e-137 492.7 275 91.3
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 4.0e-136 488.4 275 90.9
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 7.4e-130 467.6 255 93.3
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 7.4e-130 467.6 255 93.3
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 8.2e-121 437.6 276 82.2
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 3.1e-120 435.6 245 88.2
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 1.3e-118 430.3 276 79.7
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 1.8e-112 409.8 244 82.8
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 1.7e-110 403.3 275 77.5
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 3.2e-109 399.1 242 81.4
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 2.6e-106 389.4 234 80.8
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 3.7e-97 359.0 297 66.0
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 3.2e-93 345.9 275 69.1
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 8.9e-75 284.6 244 61.1
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 3.4e-74 282.7 275 58.9
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 5.9e-71 271.9 241 58.1
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.3e-70 270.8 266 54.1
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 1.8e-67 260.4 248 54.4
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 3.1e-67 259.6 301 47.8
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 5.2e-67 258.8 234 56.0
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 8.9e-67 258.1 238 55.9
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 4.4e-66 255.8 284 50.7
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 7.5e-66 255.0 240 53.8
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 4.9e-65 252.3 254 54.3
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 6.4e-65 251.9 282 51.4
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 6.4e-65 251.9 254 54.3
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 6.4e-65 251.9 285 48.8
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 8.3e-65 251.5 284 48.9
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 1.4e-64 250.8 246 51.6
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 2.4e-64 250.0 286 47.6
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 3.2e-64 249.6 279 49.1
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 4.1e-64 249.2 281 49.8
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 7.0e-64 248.4 284 51.8
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 9.2e-64 248.1 281 48.0
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 1.6e-63 247.3 286 47.9
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 2.7e-63 246.5 272 48.9
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 6.0e-63 245.4 255 49.0
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.0e-63 245.4 284 49.6
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 6.0e-63 245.4 240 52.5
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 7.8e-63 245.0 244 52.5
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 7.8e-63 245.0 244 52.0
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 1.0e-62 244.6 284 49.6
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 1.0e-62 244.6 254 48.8
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 1.3e-62 244.2 263 51.7
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 1.7e-62 243.8 284 50.0
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 1.7e-62 243.8 257 50.6
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 1.7e-62 243.8 245 51.4
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.6e-62 241.9 285 49.8
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 6.6e-62 241.9 230 54.8
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 1.5e-61 240.7 230 54.3
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 2.5e-61 240.0 291 47.1
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 5.6e-61 238.8 251 50.6
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 7.3e-61 238.4 230 53.5
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 7.3e-61 238.4 231 54.5
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 9.5e-61 238.0 239 49.0
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 9.5e-61 238.0 260 49.6
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 1.2e-60 237.7 238 49.6
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 1.2e-60 237.7 259 50.6
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 1.2e-60 237.7 284 44.7
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 2.1e-60 236.9 239 50.2
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 2.1e-60 236.9 284 47.5
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 2.8e-60 236.5 284 46.5
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 3.6e-60 236.1 287 46.3
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 1.4e-59 234.2 238 52.1
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.8e-59 233.8 282 46.8
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 2.3e-59 233.4 250 49.2
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 2.3e-59 233.4 283 45.6
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 4.0e-59 232.6 246 48.0
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 4.0e-59 232.6 237 50.6
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 4.0e-59 232.6 237 50.6
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 4.0e-59 232.6 240 51.7
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 5.2e-59 232.3 236 50.4
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 5.2e-59 232.3 228 54.8
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 6.8e-59 231.9 236 50.8
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 8.9e-59 231.5 258 49.6
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 1.5e-58 230.7 290 44.8
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 2.0e-58 230.3 280 47.5
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 3.4e-58 229.6 289 47.1
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 2.9e-57 226.5 232 51.7
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 4.9e-57 225.7 234 49.6
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 4.9e-57 225.7 287 46.7
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 8.3e-57 224.9 249 48.6
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.9e-56 223.8 249 48.2
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.7e-55 219.9 283 45.6
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.7e-55 219.9 233 50.6
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 3.5e-55 219.5 225 48.4
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 6.0e-55 218.8 268 43.7
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 7.8e-55 218.4 277 44.0
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 1.7e-54 217.2 287 43.9
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 8.6e-54 214.9 228 47.4
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 1.2e-52 211.1 282 42.9
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 6.2e-52 208.8 231 47.6
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 6.2e-52 208.8 231 47.2
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 1.1e-51 208.0 236 50.0
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 1.8e-51 207.2 233 46.4
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 2.9e-49 199.9 316 38.9
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 3.8e-49 199.5 277 41.2
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 3.8e-49 199.5 230 46.5
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 6.4e-49 198.7 236 45.8
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 8.4e-49 198.4 278 39.6
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 1.4e-48 197.6 268 42.9
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 1.9e-48 197.2 228 46.1
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 2.4e-48 196.8 224 46.9
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 3.2e-48 196.4 162 55.6
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 2.7e-47 193.4 244 45.1
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 7.8e-47 191.8 187 51.3
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 7.8e-47 191.8 187 51.3
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 2.3e-46 190.3 239 42.3
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 6.6e-46 188.7 214 49.1
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 9.6e-45 184.9 183 50.3
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 3.2e-40 169.9 273 39.2
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 4.2e-40 169.5 233 44.6
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.6e-39 167.5 232 41.4
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 2.1e-39 167.2 280 38.2
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 1.3e-38 164.5 158 50.0
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 3.9e-38 162.9 131 55.0
BraA05t20057Z Brassica rapa HOM05D005274 ORTHO05D006485 9.6e-37 158.3 88 92.0
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 2.4e-35 153.7 133 51.9
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.2e-34 151.4 278 36.3
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.3e-33 147.9 268 35.4
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 2.9e-33 146.7 209 40.7
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 2.8e-28 130.2 109 56.0
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 9.0e-27 125.2 235 33.2
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 2.6e-26 123.6 88 63.6
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 3.0e-22 110.2 295 27.8
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 2.5e-21 107.1 223 32.7
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 1.7e-17 94.4 106 41.5
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 1.1e-16 91.7 106 40.6
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.1e-11 75.1 64 50.0
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 2.4e-11 73.9 116 44.0
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 2.6e-10 70.5 62 48.4
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 2.6e-10 70.5 237 28.7
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 1.4e-08 64.7 123 35.8


User provided reference genes

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