Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06290 Brassica carinata HOM05D003303 ORTHO05D003887 2.5e-34 148.3 78 100.0
BcaC04g19244 Brassica carinata HOM05D003303 ORTHO05D003887 2.0e-23 112.1 107 63.6
C09p65610 Brassica napus HOM05D003303 ORTHO05D003887 2.0e-23 112.1 107 63.6
BolC9t59382H Brassica oleracea HOM05D003303 ORTHO05D003887 2.0e-23 112.1 107 63.6
BcaB08g37075 Brassica carinata HOM05D003303 ORTHO05D003887 4.9e-22 107.5 108 63.0
A10p26440 Brassica napus HOM05D003303 ORTHO05D003887 4.9e-22 107.5 108 63.0
BraA10t44701Z Brassica rapa HOM05D003303 ORTHO05D003887 4.9e-22 107.5 108 63.0
Thhalv10014677m.g Eutrema salsugineum HOM05D003303 ORTHO05D003887 8.3e-22 106.7 107 62.6
Sp6g32280 Schrenkiella parvula HOM05D003303 ORTHO05D003887 2.4e-21 105.1 107 61.7
AT5G11280 Arabidopsis thaliana HOM05D003303 ORTHO05D003887 3.1e-21 104.8 107 60.7
AL6G21910 Arabidopsis lyrata HOM05D003303 ORTHO05D003887 7.0e-21 103.6 107 60.7
CARHR201980 Cardamine hirsuta HOM05D003303 ORTHO05D003887 9.1e-21 103.2 107 61.7
Carub.0006s0975 Capsella rubella HOM05D003303 ORTHO05D003887 1.2e-20 102.8 107 59.8
Aa31LG3G15910 Aethionema arabicum HOM05D003303 ORTHO05D003887 1.6e-20 102.4 107 58.9
THA.LOC104799228 Tarenaya hassleriana HOM05D003303 ORTHO05D003887 7.7e-20 100.1 107 57.9
BcaB01g06298 Brassica carinata HOM05D003303 ORTHO05D003887 8.6e-19 96.7 108 58.3
CANSAT64G2029 Cannabis sativa HOM05D003303 ORTHO05D003887 7.2e-18 93.6 107 53.3
ClCG08G013220 Citrullus lanatus HOM05D003303 ORTHO05D003887 7.2e-18 93.6 107 53.3
MELO3C011249.2 Cucumis melo HOM05D003303 ORTHO05D003887 9.5e-18 93.2 107 53.3
Sed0025998 Sechium edule HOM05D003303 ORTHO05D003887 9.5e-18 93.2 107 53.3
CsaV3_2G031950 Cucumis sativus L. HOM05D003303 ORTHO05D003887 1.2e-17 92.8 106 52.8
CiPaw.08G012800 Carya illinoinensis HOM05D003303 ORTHO05D003887 4.7e-17 90.9 107 52.3
Duzib168G0888 Durio zibethinus HOM05D003303 ORTHO05D003887 8.0e-17 90.1 107 53.3
Gohir.A08G236700 Gossypium hirsutum HOM05D003303 ORTHO05D003887 1.4e-16 89.4 107 52.3
Sed0002484 Sechium edule HOM05D003303 ORTHO05D003887 1.8e-16 89.0 105 53.3
Ciclev10009474m.g Citrus clementina HOM05D003303 ORTHO05D003887 2.3e-16 88.6 107 52.3
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 2.3e-16 88.6 107 52.3
TAR636G1230 Trochodendron aralioides HOM05D003303 ORTHO05D003887 2.3e-16 88.6 107 50.5
GSVIVG01035826001 Vitis vinifera HOM05D003303 ORTHO05D003887 2.3e-16 88.6 107 50.5
Gohir.D08G257300 Gossypium hirsutum HOM05D003303 ORTHO05D003887 3.0e-16 88.2 107 51.4
Gorai.004G274300 Gossypium raimondii HOM05D003303 ORTHO05D003887 3.0e-16 88.2 107 51.4
Atru.chr7.2388 Acer truncatum HOM05D003303 ORTHO05D003887 4.0e-16 87.8 107 51.4
A03p04940 Brassica napus HOM05D003303 ORTHO05D003887 4.0e-16 87.8 47 95.7
ECA246G0415 Erigeron canadensis HOM05D003303 ORTHO05D003887 4.0e-16 87.8 112 47.3
HanXRQChr08g0234811 Helianthus annuus HOM05D003303 ORTHO05D003887 4.0e-16 87.8 107 48.6
Potri.006G251600 Populus trichocarpa HOM05D003303 ORTHO05D003887 4.0e-16 87.8 107 50.5
Sopen06g012300 Solanum pennellii HOM05D003303 ORTHO05D003887 4.0e-16 87.8 105 48.6
SGA_v2.0_scaffold20G09143 Striga asiatica HOM05D003303 ORTHO05D003887 4.0e-16 87.8 106 47.2
vmacro11152 Vaccinium macrocarpon HOM05D003303 ORTHO05D003887 4.0e-16 87.8 107 48.6
SGA_v2.0_scaffold64G21909 Striga asiatica HOM05D003303 ORTHO05D003887 5.2e-16 87.4 106 47.2
PGSC0003DMG400017130 Solanum tuberosum HOM05D003303 ORTHO05D003887 6.8e-16 87.0 107 47.7
Manes.03G016900 Manihot esculenta HOM05D003303 ORTHO05D003887 8.9e-16 86.7 107 49.5
Nitab4.5_0000447g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 8.9e-16 86.7 107 47.7
CSS0039322 Camellia sinensis var. sinensis HOM05D003303 ORTHO05D003887 1.2e-15 86.3 105 48.6
Lj8A668G29 Lonicera japonica HOM05D003303 ORTHO05D003887 1.2e-15 86.3 107 48.6
Lj8A679G18 Lonicera japonica HOM05D003303 ORTHO05D003887 1.2e-15 86.3 107 48.6
Actinidia13249 Actinidia chinensis HOM05D003303 ORTHO05D003887 1.5e-15 85.9 107 50.5
CAN.G340.3 Capsicum annuum HOM05D003303 ORTHO05D003887 1.5e-15 85.9 107 46.7
Nitab4.5_0000268g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 1.5e-15 85.9 107 46.7
ATR1156G058 Amborella trichopoda HOM05D003303 ORTHO05D003887 2.0e-15 85.5 113 47.8
Dinv30167 Davidia involucrata HOM05D003303 ORTHO05D003887 4.4e-15 84.3 107 49.5
Lj1g0001911 Lotus japonicus HOM05D003303 ORTHO05D003887 4.4e-15 84.3 107 50.5
RcHm_v2.0_Chr6g0298251 Rosa chinensis HOM05D003303 ORTHO05D003887 4.4e-15 84.3 107 51.4
Sabra06G0196600 Salix brachista HOM05D003303 ORTHO05D003887 4.4e-15 84.3 107 48.6
TWI63G1648 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 4.4e-15 84.3 107 49.5
VMungo1309G1624 Vigna mungo HOM05D003303 ORTHO05D003887 4.4e-15 84.3 107 50.5
Actinidia22360 Actinidia chinensis HOM05D003303 ORTHO05D003887 5.7e-15 84.0 108 48.1
Eucgr.C02806 Eucalyptus grandis HOM05D003303 ORTHO05D003887 5.7e-15 84.0 107 51.4
Prupe.1G478100 Prunus persica HOM05D003303 ORTHO05D003887 5.7e-15 84.0 107 49.5
Cpa.g.sc533.1 Carica papaya HOM05D003303 ORTHO05D003887 7.5e-15 83.6 107 47.7
Rhsim02G0195600 Rhododendron simsii HOM05D003303 ORTHO05D003887 7.5e-15 83.6 107 46.7
FvH4_2g29460 Fragaria vesca HOM05D003303 ORTHO05D003887 9.8e-15 83.2 107 49.5
FAN20G0011 Fragaria x ananassa HOM05D003303 ORTHO05D003887 9.8e-15 83.2 107 49.5
FAN27G1304 Fragaria x ananassa HOM05D003303 ORTHO05D003887 9.8e-15 83.2 107 49.5
Nn2g11966 Nelumbo nucifera HOM05D003303 ORTHO05D003887 9.8e-15 83.2 105 48.6
COL.COLO4_00194 Corchorus olitorius HOM05D003303 ORTHO05D003887 1.3e-14 82.8 107 49.5
Glyma.06G069800 Glycine max HOM05D003303 ORTHO05D003887 1.3e-14 82.8 107 49.5
TPR.G31761 Trifolium pratense HOM05D003303 ORTHO05D003887 1.3e-14 82.8 108 51.9
Hma1.2p1_0000F.1_g000400 Hydrangea macrophylla HOM05D003303 ORTHO05D003887 1.7e-14 82.4 105 48.6
Phvul.009G094400 Phaseolus vulgaris HOM05D003303 ORTHO05D003887 1.7e-14 82.4 107 49.5
Lsat_1_v5_gn_5_30500 Lactuca sativa HOM05D003303 ORTHO05D003887 2.2e-14 82.0 111 45.0
Lalb_Chr08g0243991 Lupinus albus HOM05D003303 ORTHO05D003887 2.2e-14 82.0 107 49.5
Glyma.04G068100 Glycine max HOM05D003303 ORTHO05D003887 2.9e-14 81.6 107 48.6
Lalb_Chr23g0268741 Lupinus albus HOM05D003303 ORTHO05D003887 2.9e-14 81.6 107 49.5
Oeu024202.1 Olea europaea HOM05D003303 ORTHO05D003887 2.9e-14 81.6 107 45.8
Rhsim02G0198400 Rhododendron simsii HOM05D003303 ORTHO05D003887 2.9e-14 81.6 107 46.7
Peaxi162Scf00603g00012 Petunia axillaris HOM05D003303 ORTHO05D003887 3.7e-14 81.3 108 47.2
PGR044G1059 Punica granatum HOM05D003303 ORTHO05D003887 3.7e-14 81.3 107 50.5
Ca_15721_v3 Cicer arietinum L. HOM05D003303 ORTHO05D003887 4.9e-14 80.9 108 50.9
Medtr3g107550 Medicago truncatula HOM05D003303 ORTHO05D003887 4.9e-14 80.9 108 50.9
Psat5g028480 Pisum sativum HOM05D003303 ORTHO05D003887 8.3e-14 80.1 109 50.5
Aqoxy7G02100 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 1.1e-13 79.7 107 43.0
Cc08_g00960 Coffea canephora HOM05D003303 ORTHO05D003887 1.4e-13 79.3 109 45.0
Nn8g39390 Nelumbo nucifera HOM05D003303 ORTHO05D003887 1.4e-13 79.3 105 46.7
Aqoxy7G03733 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 3.2e-13 78.2 105 48.6
MSTRG.1714 Avicennia marina HOM05D003303 ORTHO05D003887 4.1e-13 77.8 113 42.5
MD15G1123100 Malus domestica HOM05D003303 ORTHO05D003887 4.1e-13 77.8 109 50.5
MSTRG.25996 Avicennia marina HOM05D003303 ORTHO05D003887 5.4e-13 77.4 107 43.9
DCAR_006232 Daucus carota HOM05D003303 ORTHO05D003887 7.0e-13 77.0 108 43.5
Hund20355 Selenicereus undatus HOM05D003303 ORTHO05D003887 9.2e-13 76.6 107 45.8
AUR62030643 Chenopodium quinoa HOM05D003303 ORTHO05D003887 1.2e-12 76.3 105 43.8
Migut.E01788 Erythranthe guttata HOM05D003303 ORTHO05D003887 1.6e-12 75.9 107 43.0
arahy.Tifrunner.gnm1.ann1.CWZP7X Arachis hypogaea HOM05D003303 ORTHO05D003887 2.0e-12 75.5 108 46.3
Ah.12g064040 Amaranthus hybridus HOM05D003303 ORTHO05D003887 2.7e-12 75.1 105 43.8
arahy.Tifrunner.gnm1.ann1.DJG6PN Arachis hypogaea HOM05D003303 ORTHO05D003887 2.7e-12 75.1 108 46.3
PSO210G5012 Papaver somniferum HOM05D003303 ORTHO05D003887 2.7e-12 75.1 113 44.2
PSO210G7678 Papaver somniferum HOM05D003303 ORTHO05D003887 2.7e-12 75.1 113 44.2
CDE05G1646 Ceratophyllum demersum HOM05D003303 ORTHO05D003887 3.5e-12 74.7 105 45.7
EL10Ac2g02608 Beta vulgaris HOM05D003303 ORTHO05D003887 7.8e-12 73.6 105 42.9
Sc09g0008410 Simmondsia chinensis HOM05D003303 ORTHO05D003887 1.0e-11 73.2 105 41.9
TWI34G1555 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 1.3e-11 72.8 107 43.9
Solyc06g036540.1 Solanum lycopersicum HOM05D003303 ORTHO05D003887 1.7e-11 72.4 50 68.0
Eucgr.C00336 Eucalyptus grandis HOM05D003303 ORTHO05D003887 2.3e-11 72.0 100 48.0
Zm00001eb162550 Zea mays HOM05D003303 ORTHO05D003887 2.3e-11 72.0 107 43.0
SalBow1G3705 Salvia bowleyana HOM05D003303 ORTHO05D003887 2.9e-11 71.6 105 43.8
Eucgr.I00800 Eucalyptus grandis HOM05D003303 ORTHO05D003887 5.0e-11 70.9 48 77.1
Os01g0555300 Oryza sativa ssp. japonica HOM05D003303 ORTHO05D003887 1.5e-10 69.3 113 41.6
HPP92_023167 Vanilla planifolia HOM05D003303 ORTHO05D003887 3.3e-10 68.2 106 43.4
Zm00001eb342310 Zea mays HOM05D003303 ORTHO05D003887 4.3e-10 67.8 107 42.1
AUR62024894 Chenopodium quinoa HOM05D003303 ORTHO05D003887 1.2e-09 66.2 101 41.6
SEGI_05060 Sequoiadendron giganteum HOM05D003303 ORTHO05D003887 1.4e-08 62.8 105 41.0
Oeu031686.1 Olea europaea HOM05D003303 ORTHO05D003887 1.3e-06 56.2 48 54.2
Oeu006259.1 Olea europaea HOM05D003303 ORTHO05D003887 8.3e-06 53.5 68 41.2


User provided reference genes

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