Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 2.5e-101 372.1 186 100.0
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 2.8e-76 288.9 226 69.0
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 4.9e-73 278.1 226 65.5
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 2.5e-72 275.8 226 65.0
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 2.5e-72 275.8 226 65.0
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 7.1e-72 274.2 226 64.6
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 3.4e-66 255.4 227 60.8
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 5.9e-66 254.6 227 60.8
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 5.0e-65 251.5 211 64.0
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 1.3e-60 236.9 229 55.5
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 7.2e-56 221.1 234 52.1
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 9.4e-56 220.7 233 53.6
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 2.3e-54 216.1 227 54.2
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 5.1e-54 214.9 226 53.1
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 3.7e-52 208.8 227 50.2
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 7.4e-45 184.5 139 64.7
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 6.3e-44 181.4 227 46.7
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 6.3e-44 181.4 227 46.7
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 1.4e-43 180.3 137 65.7
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 4.1e-43 178.7 233 44.6
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 4.1e-43 178.7 130 68.5
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 9.1e-43 177.6 139 63.3
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 2.0e-42 176.4 131 64.9
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 3.5e-42 175.6 227 46.3
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 5.9e-42 174.9 136 61.8
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 1.3e-41 173.7 138 61.6
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 2.9e-41 172.6 140 59.3
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 2.9e-41 172.6 133 66.2
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 3.8e-41 172.2 137 62.8
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 5.0e-41 171.8 136 62.5
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 6.5e-41 171.4 138 60.9
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 8.5e-41 171.0 133 66.9
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 1.1e-40 170.6 133 63.9
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 1.5e-40 170.2 133 64.7
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 1.9e-40 169.9 136 61.0
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 5.5e-40 168.3 134 64.2
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 7.2e-40 167.9 131 63.4
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 7.2e-40 167.9 133 63.2
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 9.4e-40 167.5 131 63.4
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 1.6e-39 166.8 151 59.6
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 2.1e-39 166.4 129 64.3
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 2.1e-39 166.4 136 63.2
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 2.7e-39 166.0 134 62.7
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 2.7e-39 166.0 131 63.4
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 3.6e-39 165.6 133 63.2
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 3.6e-39 165.6 130 65.4
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 6.1e-39 164.9 136 62.5
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 6.1e-39 164.9 136 61.8
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 8.0e-39 164.5 136 61.0
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 8.0e-39 164.5 133 63.9
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 1.0e-38 164.1 129 60.5
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 1.0e-38 164.1 129 60.5
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 1.4e-38 163.7 136 61.8
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 1.8e-38 163.3 133 62.4
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 1.8e-38 163.3 133 62.4
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 2.3e-38 162.9 133 60.9
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 2.3e-38 162.9 131 63.4
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 2.3e-38 162.9 133 60.9
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 4.0e-38 162.2 135 61.5
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 8.8e-38 161.0 132 59.8
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.5e-37 160.2 135 56.3
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 4.4e-37 158.7 137 59.9
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 5.7e-37 158.3 133 63.2
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 5.7e-37 158.3 122 65.6
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 7.5e-37 157.9 148 57.4
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.3e-36 157.1 164 54.3
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 1.7e-36 156.8 132 56.1
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 2.2e-36 156.4 127 59.8
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 2.2e-36 156.4 136 60.3
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 2.8e-36 156.0 142 57.0
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 2.8e-36 156.0 138 56.5
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 4.8e-36 155.2 131 58.0
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 4.8e-36 155.2 131 58.0
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 6.3e-36 154.8 133 57.1
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 1.4e-35 153.7 137 56.2
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 3.1e-35 152.5 134 57.5
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 5.3e-35 151.8 133 57.1
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 7.0e-35 151.4 133 56.4
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 1.6e-34 150.2 136 53.7
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 4.5e-34 148.7 147 54.4
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 1.3e-33 147.1 138 60.9
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 1.7e-33 146.7 144 50.0
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 3.8e-33 145.6 133 55.6
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 5.0e-33 145.2 139 51.8
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 1.9e-32 143.3 156 51.3
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 4.2e-32 142.1 119 61.3
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 1.6e-31 140.2 150 52.0
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 3.6e-31 139.0 122 57.4
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 6.1e-31 138.3 129 56.6
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 2.3e-30 136.3 126 58.7
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 3.0e-30 136.0 129 56.6
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 4.0e-30 135.6 139 51.1
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 3.4e-29 132.5 159 44.0
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 4.4e-29 132.1 133 51.1
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 6.3e-28 128.3 131 55.0
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.1e-27 127.5 129 55.8
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 1.4e-27 127.1 138 51.4
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.2e-26 124.0 113 60.2
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 5.9e-26 121.7 118 53.4
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 1.0e-22 110.9 152 46.1
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 1.5e-21 107.1 190 41.1
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 4.1e-19 99.0 132 43.9
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 7.8e-18 94.7 64 71.9
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 1.5e-16 90.5 196 33.2
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.2e-15 87.4 140 37.1
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 1.8e-14 83.6 132 34.8
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 5.2e-14 82.0 150 36.0
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.2e-13 80.9 139 33.8
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 2.0e-13 80.1 148 33.1
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 5.6e-08 62.0 109 37.6


User provided reference genes

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