Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 6.8e-176 620.5 311 100.0
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 2.6e-167 592.0 312 94.6
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 7.5e-167 590.5 312 94.9
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 9.8e-167 590.1 312 95.2
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 2.9e-166 588.6 312 94.9
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 2.1e-156 555.8 293 94.9
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 6.0e-156 554.3 313 87.9
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 2.6e-143 512.3 304 82.2
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 3.8e-142 508.4 320 81.9
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 4.6e-140 501.5 312 81.7
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 1.7e-139 499.6 313 80.2
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 6.6e-139 497.7 318 77.7
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 9.6e-138 493.8 311 77.8
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 1.3e-123 446.8 312 73.7
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 6.2e-121 438.0 311 70.1
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 1.4e-120 436.8 311 69.8
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 5.3e-120 434.9 319 67.1
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 9.0e-120 434.1 316 69.0
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 2.6e-119 432.6 311 69.8
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 2.9e-118 429.1 317 67.5
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 4.9e-118 428.3 317 68.1
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 1.9e-117 426.4 315 67.9
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 1.9e-117 426.4 308 67.2
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 1.2e-116 423.7 311 68.2
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 1.2e-116 423.7 316 68.0
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 2.7e-116 422.5 305 69.5
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 2.7e-116 422.5 310 68.1
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 1.3e-115 420.2 310 69.0
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 2.3e-115 419.5 308 65.9
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 3.0e-115 419.1 311 66.6
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 5.1e-115 418.3 311 67.2
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 1.5e-114 416.8 313 67.4
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 3.3e-114 415.6 305 67.5
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 5.7e-114 414.8 301 68.4
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 1.3e-113 413.7 307 67.8
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 1.6e-113 413.3 307 67.4
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 1.6e-113 413.3 303 69.0
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 2.2e-113 412.9 317 65.6
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 6.3e-113 411.4 311 67.2
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 6.3e-113 411.4 313 66.1
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 8.2e-113 411.0 311 66.6
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 8.2e-113 411.0 296 70.6
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 1.8e-112 409.8 305 66.9
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 3.1e-112 409.1 317 65.3
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 9.0e-112 407.5 308 67.2
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 2.6e-111 406.0 315 64.8
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 5.9e-111 404.8 307 66.4
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 5.9e-111 404.8 307 67.8
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 1.0e-110 404.1 308 65.6
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 3.8e-110 402.1 309 65.7
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 4.2e-109 398.7 317 63.7
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 5.5e-109 398.3 304 62.8
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 7.2e-109 397.9 308 64.0
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 7.2e-109 397.9 317 63.7
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 1.2e-108 397.1 313 64.5
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 1.2e-108 397.1 306 65.4
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 1.6e-108 396.7 309 65.0
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 2.7e-108 396.0 311 63.7
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 2.7e-108 396.0 313 64.5
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 2.7e-108 396.0 313 64.5
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 3.6e-108 395.6 318 65.4
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 1.8e-107 393.3 306 64.4
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 2.3e-107 392.9 302 63.6
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 5.1e-107 391.7 302 63.2
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 6.7e-107 391.3 307 62.5
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 1.1e-106 390.6 323 62.5
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 1.1e-106 390.6 315 62.2
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 4.3e-106 388.7 313 62.0
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 1.7e-105 386.7 305 63.6
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 1.4e-104 383.6 296 65.9
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 2.4e-104 382.9 292 66.1
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 1.0e-102 377.5 292 66.1
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 2.2e-102 376.3 299 61.2
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 1.9e-101 373.2 310 63.5
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 3.2e-101 372.5 300 64.3
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 4.2e-101 372.1 276 67.4
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 7.2e-101 371.3 313 59.7
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 1.6e-100 370.2 304 59.5
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.6e-100 370.2 312 57.4
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 2.7e-100 369.4 264 70.5
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 4.7e-100 368.6 305 61.0
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 4.7e-100 368.6 310 61.9
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 3.9e-99 365.5 308 61.0
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 8.8e-99 364.4 316 61.1
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 1.1e-98 364.0 309 61.5
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.4e-96 357.1 314 60.2
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 1.8e-96 356.7 328 54.6
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 5.3e-96 355.1 302 58.9
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 3.5e-95 352.4 302 61.3
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 4.5e-95 352.1 404 49.3
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 1.3e-94 350.5 242 72.7
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 5.0e-94 348.6 310 60.0
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 3.9e-91 339.0 281 62.6
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 3.3e-90 335.9 308 57.5
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 3.3e-90 335.9 308 56.8
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 2.4e-88 329.7 308 56.5
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 1.2e-87 327.4 238 69.3
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 5.5e-85 318.5 265 60.0
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.8e-83 313.5 282 59.2
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 7.2e-77 291.6 313 52.7
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 4.7e-76 288.9 226 69.0
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 5.9e-71 271.9 190 71.1
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 8.3e-49 198.4 303 39.9
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 2.3e-46 190.3 233 48.9
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 1.1e-45 188.0 295 35.9
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 3.6e-44 183.0 302 37.4
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.1e-43 181.4 295 38.3
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.4e-43 181.0 303 35.6
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.9e-40 170.6 316 32.0
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 5.1e-38 162.5 140 58.6
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 7.6e-34 148.7 212 42.9
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 2.5e-29 133.7 238 39.5
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 3.1e-27 126.7 175 41.7
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 1.7e-22 110.9 137 45.3
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 2.0e-18 97.4 72 61.1
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 9.3e-16 88.6 231 32.0


User provided reference genes

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