Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 6.0e-103 377.5 187 100.0
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 2.2e-89 332.4 188 89.9
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 2.2e-89 332.4 188 89.9
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 2.7e-87 325.5 187 88.8
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 4.6e-87 324.7 188 88.8
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 3.1e-83 312.0 191 84.3
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 7.7e-82 307.4 193 83.9
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 7.7e-82 307.4 192 83.9
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 3.2e-80 302.0 193 81.9
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 3.2e-80 302.0 191 82.2
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 1.2e-79 300.1 192 81.2
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 3.6e-79 298.5 187 82.9
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 2.8e-76 288.9 187 78.6
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 2.5e-64 249.2 192 68.8
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 5.9e-58 228.0 173 68.8
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 6.5e-57 224.6 181 64.1
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 5.5e-56 221.5 170 68.8
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 9.4e-56 220.7 141 77.3
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 1.2e-55 220.3 165 67.9
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 1.2e-55 220.3 141 76.6
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 1.6e-55 219.9 181 63.0
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 2.1e-55 219.5 142 75.4
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 2.1e-55 219.5 136 76.5
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 2.1e-55 219.5 141 75.2
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 2.7e-55 219.2 179 64.8
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 2.7e-55 219.2 141 76.6
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 2.7e-55 219.2 141 76.6
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 6.1e-55 218.0 143 74.8
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 6.1e-55 218.0 150 70.7
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 6.1e-55 218.0 143 74.1
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 1.0e-54 217.2 142 76.1
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 1.4e-54 216.9 174 63.2
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 2.3e-54 216.1 149 69.8
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 3.0e-54 215.7 187 62.0
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 3.0e-54 215.7 150 69.3
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 3.0e-54 215.7 177 63.3
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 4.0e-54 215.3 162 67.3
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 5.2e-54 214.9 118 84.7
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 6.8e-54 214.5 141 75.9
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 8.8e-54 214.2 162 65.4
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 8.8e-54 214.2 146 67.1
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 1.2e-53 213.8 190 61.6
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 1.2e-53 213.8 143 74.1
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 1.2e-53 213.8 118 83.1
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 1.2e-53 213.8 180 64.4
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 1.5e-53 213.4 145 73.1
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 1.5e-53 213.4 177 63.3
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 2.0e-53 213.0 187 58.8
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 2.0e-53 213.0 187 61.5
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 2.0e-53 213.0 144 74.3
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 2.0e-53 213.0 178 64.0
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 2.0e-53 213.0 141 73.8
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 2.6e-53 212.6 189 61.4
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 2.6e-53 212.6 118 83.1
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 4.4e-53 211.8 198 61.1
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 4.4e-53 211.8 126 79.4
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 5.7e-53 211.5 128 78.1
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 5.7e-53 211.5 127 78.7
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 7.5e-53 211.1 150 70.0
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 7.5e-53 211.1 180 62.8
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 9.8e-53 210.7 140 71.4
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 9.8e-53 210.7 194 60.8
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 1.7e-52 209.9 119 80.7
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 3.7e-52 208.8 187 57.2
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 3.7e-52 208.8 123 81.3
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 4.8e-52 208.4 168 63.7
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 6.3e-52 208.0 119 81.5
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 6.3e-52 208.0 132 75.0
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 8.3e-52 207.6 176 60.2
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 8.3e-52 207.6 158 65.2
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 2.4e-51 206.1 141 70.2
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 2.4e-51 206.1 132 74.2
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 3.1e-51 205.7 143 69.2
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 3.1e-51 205.7 152 66.4
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 4.1e-51 205.3 145 67.6
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 5.4e-51 204.9 171 60.8
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 5.4e-51 204.9 135 72.6
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 5.4e-51 204.9 136 72.1
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 7.0e-51 204.5 151 68.2
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 7.0e-51 204.5 168 63.1
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 7.0e-51 204.5 169 64.5
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 7.0e-51 204.5 119 81.5
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 9.1e-51 204.1 157 63.7
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 2.0e-50 203.0 118 79.7
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 2.0e-50 203.0 128 75.8
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 3.5e-50 202.2 121 78.5
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 7.7e-50 201.1 118 78.0
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 5.0e-49 198.4 173 59.0
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 3.2e-48 195.7 138 68.8
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 3.2e-48 195.7 154 62.3
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 7.2e-48 194.5 119 73.1
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 8.0e-47 191.0 133 69.2
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 1.4e-46 190.3 122 70.5
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 4.9e-44 181.8 147 59.2
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 6.3e-44 181.4 130 67.7
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 8.3e-44 181.0 120 68.3
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 2.4e-43 179.5 130 66.9
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 9.1e-43 177.6 188 52.1
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 4.5e-42 175.3 193 50.8
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 4.5e-42 175.3 121 64.5
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 1.1e-40 170.6 150 54.0
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 1.6e-39 166.8 130 63.1
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 8.0e-39 164.5 151 61.6
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 4.1e-35 152.1 121 58.7
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 4.1e-35 152.1 125 56.8
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 1.6e-34 150.2 148 48.6
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 3.5e-34 149.1 119 58.8
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 7.3e-32 141.4 107 73.8
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 6.6e-25 118.2 108 60.2
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 1.1e-24 117.5 122 57.4
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 1.2e-23 114.0 74 70.3
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 3.1e-22 109.4 81 66.7
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 4.4e-21 105.5 116 49.1
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 2.9e-20 102.8 125 46.4
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 2.4e-19 99.8 57 78.9
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 3.3e-16 89.4 87 51.7
BraA10t44742Z Brassica rapa HOM05D037374 ORTHO05D028018 4.7e-15 85.5 81 65.4
Sed0005624 Sechium edule HOM05D006706 ORTHO05D373521 8.1e-07 58.2 59 50.8


User provided reference genes

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