Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06248 Brassica carinata HOM05D000860 ORTHO05D003230 1.2e-49 199.5 102 100.0
C03p00280 Brassica napus HOM05D000860 ORTHO05D003230 4.5e-44 181.0 111 88.3
BcaB01g06116 Brassica carinata HOM05D000860 ORTHO05D003230 2.9e-43 178.3 106 90.6
A03p00130 Brassica napus HOM05D000860 ORTHO05D003230 2.9e-43 178.3 113 86.7
BolC3t12600H Brassica oleracea HOM05D000860 ORTHO05D003230 2.9e-43 178.3 106 90.6
BraA03t09403Z Brassica rapa HOM05D000860 ORTHO05D003230 1.8e-40 169.1 111 84.7
AT5G01710 Arabidopsis thaliana HOM05D000860 ORTHO05D003230 2.1e-33 145.6 116 69.0
AL6G10340 Arabidopsis lyrata HOM05D000860 ORTHO05D003230 3.6e-33 144.8 116 69.0
CARHR212070 Cardamine hirsuta HOM05D000860 ORTHO05D003230 6.1e-33 144.1 116 68.1
Carub.0006s0013 Capsella rubella HOM05D000860 ORTHO05D003230 8.0e-33 143.7 114 67.5
Aa31LG1G23330 Aethionema arabicum HOM05D000860 ORTHO05D003230 1.8e-32 142.5 112 67.9
Thhalv10015877m.g Eutrema salsugineum HOM05D000860 ORTHO05D003230 2.0e-31 139.0 117 66.7
Sp6g40970 Schrenkiella parvula HOM05D000860 ORTHO05D003230 1.7e-30 136.0 115 66.1
THA.LOC104816178 Tarenaya hassleriana HOM05D000860 ORTHO05D003230 9.1e-29 130.2 112 62.5
Thecc.05G005900 Theobroma cacao HOM05D000860 ORTHO05D003230 3.5e-28 128.3 116 61.2
Duzib128G1948 Durio zibethinus HOM05D000860 ORTHO05D003230 5.9e-28 127.5 108 61.1
THA.LOC104823307 Tarenaya hassleriana HOM05D000860 ORTHO05D003230 5.9e-28 127.5 118 56.8
BcaC03g13085 Brassica carinata HOM05D000860 ORTHO05D003230 6.5e-27 124.0 99 68.7
BolC2t06008H Brassica oleracea HOM05D000860 ORTHO05D003230 6.5e-27 124.0 99 68.7
COL.COLO4_14442 Corchorus olitorius HOM05D000860 ORTHO05D003230 6.5e-27 124.0 103 62.1
TWI53G1879 Tripterygium wilfordii HOM05D000860 ORTHO05D003230 6.5e-27 124.0 110 59.1
TWI74G0600 Tripterygium wilfordii HOM05D000860 ORTHO05D003230 6.5e-27 124.0 120 55.0
CANSAT35G2042 Cannabis sativa HOM05D000860 ORTHO05D003230 1.9e-26 122.5 126 54.0
Duzib093G1744 Durio zibethinus HOM05D000860 ORTHO05D003230 2.5e-26 122.1 110 59.1
BraA02t04681Z Brassica rapa HOM05D000860 ORTHO05D003230 3.3e-26 121.7 99 65.7
Cpa.g.sc5.246 Carica papaya HOM05D000860 ORTHO05D003230 7.2e-26 120.6 121 55.4
Manes.09G112500 Manihot esculenta HOM05D000860 ORTHO05D003230 9.5e-26 120.2 108 54.6
C02p00110 Brassica napus HOM05D000860 ORTHO05D003230 1.6e-25 119.4 97 66.0
Cfa017106 Carpinus fangiana HOM05D000860 ORTHO05D003230 1.6e-25 119.4 108 57.4
CiPaw.09G215900 Carya illinoinensis HOM05D000860 ORTHO05D003230 3.6e-25 118.2 116 54.3
PGR031G3676 Punica granatum HOM05D000860 ORTHO05D003230 8.0e-25 117.1 110 55.5
BcaB05g21916 Brassica carinata HOM05D000860 ORTHO05D003230 1.4e-24 116.3 97 64.9
Haze_21093 Corylus avellana HOM05D000860 ORTHO05D003230 1.8e-24 115.9 108 56.5
QL07p033824 Quercus lobata HOM05D000860 ORTHO05D003230 1.8e-24 115.9 101 57.4
Ciclev10011494m.g Citrus clementina HOM05D000860 ORTHO05D003230 2.3e-24 115.5 112 54.5
CiPaw.10G161200 Carya illinoinensis HOM05D000860 ORTHO05D003230 5.2e-24 114.4 108 55.6
Gohir.A04G095800 Gossypium hirsutum HOM05D000860 ORTHO05D003230 8.9e-24 113.6 113 53.1
TWI77G0752 Tripterygium wilfordii HOM05D000860 ORTHO05D003230 8.9e-24 113.6 114 51.8
Atru.chr8.2348 Acer truncatum HOM05D000860 ORTHO05D003230 1.2e-23 113.2 114 56.1
arahy.Tifrunner.gnm1.ann1.704HAC Arachis hypogaea HOM05D000860 ORTHO05D003230 2.0e-23 112.5 103 53.4
VMungo1383G2980 Vigna mungo HOM05D000860 ORTHO05D003230 2.0e-23 112.5 105 57.1
Ca_20364_v3 Cicer arietinum L. HOM05D000860 ORTHO05D003230 3.4e-23 111.7 105 51.4
ClCG04G006630 Citrullus lanatus HOM05D000860 ORTHO05D003230 4.4e-23 111.3 113 51.3
Phvul.008G091100 Phaseolus vulgaris HOM05D000860 ORTHO05D003230 4.4e-23 111.3 105 56.2
Glyma.18G208202 Glycine max HOM05D000860 ORTHO05D003230 5.7e-23 110.9 106 57.5
Gorai.012G119400 Gossypium raimondii HOM05D000860 ORTHO05D003230 5.7e-23 110.9 113 53.1
Potri.016G128100 Populus trichocarpa HOM05D000860 ORTHO05D003230 7.5e-23 110.5 110 52.7
MELO3C026031.2 Cucumis melo HOM05D000860 ORTHO05D003230 9.8e-23 110.2 113 51.3
MD04G1167500 Malus domestica HOM05D000860 ORTHO05D003230 9.8e-23 110.2 112 50.0
RcHm_v2.0_Chr3g0461501 Rosa chinensis HOM05D000860 ORTHO05D003230 9.8e-23 110.2 111 49.5
Sed0023108 Sechium edule HOM05D000860 ORTHO05D003230 1.3e-22 109.8 113 51.3
Gohir.D04G135600 Gossypium hirsutum HOM05D000860 ORTHO05D003230 1.7e-22 109.4 113 52.2
Prupe.6G285700 Prunus persica HOM05D000860 ORTHO05D003230 2.2e-22 109.0 112 50.0
CsaV3_4G026710 Cucumis sativus L. HOM05D000860 ORTHO05D003230 2.8e-22 108.6 113 50.4
Hma1.2p1_0501F.1_g167300 Hydrangea macrophylla HOM05D000860 ORTHO05D003230 3.7e-22 108.2 107 56.1
Dinv35418 Davidia involucrata HOM05D000860 ORTHO05D003230 4.9e-22 107.8 114 54.4
MD12G1180800 Malus domestica HOM05D000860 ORTHO05D003230 4.9e-22 107.8 112 50.0
Sabra16G0130300 Salix brachista HOM05D000860 ORTHO05D003230 4.9e-22 107.8 110 51.8
Potri.006G105100 Populus trichocarpa HOM05D000860 ORTHO05D003230 8.3e-22 107.1 110 53.6
Lj3g0009918 Lotus japonicus HOM05D000860 ORTHO05D003230 1.1e-21 106.7 107 49.5
CSS0010257 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D003230 2.4e-21 105.5 115 51.3
CSS0046750 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D003230 2.4e-21 105.5 115 51.3
Lj1g0022602 Lotus japonicus HOM05D000860 ORTHO05D003230 5.4e-21 104.4 99 52.5
Ah.08g210010 Amaranthus hybridus HOM05D000860 ORTHO05D003230 7.0e-21 104.0 107 54.2
TAR369G0317 Trochodendron aralioides HOM05D000860 ORTHO05D003230 7.0e-21 104.0 112 49.1
Aqoxy1G01269 Aquilegia oxysepala HOM05D000860 ORTHO05D003230 9.2e-21 103.6 114 49.1
TPR.G5258 Trifolium pratense HOM05D000860 ORTHO05D003230 9.2e-21 103.6 111 46.8
Sabra06G0081800 Salix brachista HOM05D000860 ORTHO05D003230 1.2e-20 103.2 110 51.8
Actinidia20772 Actinidia chinensis HOM05D000860 ORTHO05D003230 2.7e-20 102.1 113 53.1
FAN02G3288 Fragaria x ananassa HOM05D000860 ORTHO05D003230 2.7e-20 102.1 108 51.9
Medtr4g013290 Medicago truncatula HOM05D000860 ORTHO05D003230 2.7e-20 102.1 109 45.9
TAR623G1426 Trochodendron aralioides HOM05D000860 ORTHO05D003230 2.7e-20 102.1 112 48.2
CDE06G0504 Ceratophyllum demersum HOM05D000860 ORTHO05D003230 5.9e-20 100.9 107 48.6
PGR004G0739 Punica granatum HOM05D000860 ORTHO05D003230 5.9e-20 100.9 106 49.1
TPR.G18667 Trifolium pratense HOM05D000860 ORTHO05D003230 5.9e-20 100.9 117 44.4
Ca_07705_v3 Cicer arietinum L. HOM05D000860 ORTHO05D003230 7.8e-20 100.5 108 45.4
Glyma.03G045400 Glycine max HOM05D000860 ORTHO05D003230 1.0e-19 100.1 104 51.0
Glyma.U031602 Glycine max HOM05D000860 ORTHO05D003230 1.0e-19 100.1 104 51.0
EL10Ac7g16796 Beta vulgaris HOM05D000860 ORTHO05D003230 1.3e-19 99.8 110 50.9
Psat3g123000 Pisum sativum HOM05D000860 ORTHO05D003230 1.7e-19 99.4 105 47.6
Ah.15g090430 Amaranthus hybridus HOM05D000860 ORTHO05D003230 2.3e-19 99.0 102 51.0
FvH4_6g10540 Fragaria vesca HOM05D000860 ORTHO05D003230 2.9e-19 98.6 111 47.7
FAN14G0660 Fragaria x ananassa HOM05D000860 ORTHO05D003230 2.9e-19 98.6 111 47.7
Actinidia29066 Actinidia chinensis HOM05D000860 ORTHO05D003230 5.0e-19 97.8 107 56.1
Eucgr.K02942 Eucalyptus grandis HOM05D000860 ORTHO05D003230 8.6e-19 97.1 111 46.8
Phvul.010G062900 Phaseolus vulgaris HOM05D000860 ORTHO05D003230 8.6e-19 97.1 100 48.0
SGA_v2.0_scaffold85G26676 Striga asiatica HOM05D000860 ORTHO05D003230 8.6e-19 97.1 116 50.9
VMungo1080G0846 Vigna mungo HOM05D000860 ORTHO05D003230 8.6e-19 97.1 99 50.5
Nitab4.5_0001226g0060 Nicotiana tabacum HOM05D000860 ORTHO05D003230 1.5e-18 96.3 114 46.5
Nitab4.5_0000047g0160 Nicotiana tabacum HOM05D000860 ORTHO05D003230 1.9e-18 95.9 114 45.6
Psat7g249520 Pisum sativum HOM05D000860 ORTHO05D003230 2.5e-18 95.5 105 46.7
SGA_v2.0_scaffold75G25037 Striga asiatica HOM05D000860 ORTHO05D003230 2.5e-18 95.5 125 46.4
AUR62026337 Chenopodium quinoa HOM05D000860 ORTHO05D003230 3.3e-18 95.1 110 45.5
Glyma.01G127900 Glycine max HOM05D000860 ORTHO05D003230 3.3e-18 95.1 107 47.7
Gorai.013G013000 Gossypium raimondii HOM05D000860 ORTHO05D003230 5.6e-18 94.4 95 53.7
AUR62006288 Chenopodium quinoa HOM05D000860 ORTHO05D003230 7.3e-18 94.0 110 45.5
Oeu057641.1 Olea europaea HOM05D000860 ORTHO05D003230 9.5e-18 93.6 124 43.5
Actinidia11546 Actinidia chinensis HOM05D000860 ORTHO05D003230 1.2e-17 93.2 107 53.3
Gohir.A13G011100 Gossypium hirsutum HOM05D000860 ORTHO05D003230 1.6e-17 92.8 95 53.7
PSO339G4857 Papaver somniferum HOM05D000860 ORTHO05D003230 1.6e-17 92.8 109 46.8
Rhsim05G0226400 Rhododendron simsii HOM05D000860 ORTHO05D003230 2.1e-17 92.4 105 49.5
PGSC0003DMG400011624 Solanum tuberosum HOM05D000860 ORTHO05D003230 2.1e-17 92.4 114 41.2
PSO384G2948 Papaver somniferum HOM05D000860 ORTHO05D003230 2.8e-17 92.0 109 45.9
arahy.Tifrunner.gnm1.ann1.68WIDH Arachis hypogaea HOM05D000860 ORTHO05D003230 3.6e-17 91.7 111 43.2
arahy.Tifrunner.gnm1.ann1.WZ1PKC Arachis hypogaea HOM05D000860 ORTHO05D003230 3.6e-17 91.7 111 43.2
Migut.J00090 Erythranthe guttata HOM05D000860 ORTHO05D003230 3.6e-17 91.7 115 48.7
Sc20g0006730 Simmondsia chinensis HOM05D000860 ORTHO05D003230 6.1e-17 90.9 123 42.3
Cc00_g13870 Coffea canephora HOM05D000860 ORTHO05D003230 1.8e-16 89.4 122 45.1
VMungo0540G0584 Vigna mungo HOM05D000860 ORTHO05D003230 1.8e-16 89.4 94 48.9
Sopen09g008660 Solanum pennellii HOM05D000860 ORTHO05D003230 2.3e-16 89.0 114 39.5
TPR.G22168 Trifolium pratense HOM05D000860 ORTHO05D003230 2.3e-16 89.0 95 45.3
Lj2C66T8 Lonicera japonica HOM05D000860 ORTHO05D003230 3.0e-16 88.6 113 46.0
MSTRG.5537 Avicennia marina HOM05D000860 ORTHO05D003230 5.2e-16 87.8 125 45.6
Solyc09g015040.1 Solanum lycopersicum HOM05D000860 ORTHO05D003230 5.2e-16 87.8 114 40.4
Medtr7g070530 Medicago truncatula HOM05D000860 ORTHO05D003230 6.8e-16 87.4 95 48.4
Peaxi162Scf00744g00024 Petunia axillaris HOM05D000860 ORTHO05D003230 8.9e-16 87.0 115 40.9
Prupe.6G047200 Prunus persica HOM05D000860 ORTHO05D003230 2.0e-15 85.9 103 46.6
Medtr3g031200 Medicago truncatula HOM05D000860 ORTHO05D003230 2.6e-15 85.5 94 48.9
RcHm_v2.0_Chr5g0071801 Rosa chinensis HOM05D000860 ORTHO05D003230 3.4e-15 85.1 104 46.2
Ca_15014_v3 Cicer arietinum L. HOM05D000860 ORTHO05D003230 4.4e-15 84.7 88 47.7
Psat5g152600 Pisum sativum HOM05D000860 ORTHO05D003230 5.8e-15 84.3 94 44.7
CDE07G0135 Ceratophyllum demersum HOM05D000127 ORTHO05D003230 1.7e-14 82.8 82 52.4
FvH4_3g39840 Fragaria vesca HOM05D000860 ORTHO05D003230 2.9e-14 82.0 103 45.6
CSS0032860 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D003230 3.7e-14 81.6 96 51.0
SHI12885 Sapria himalayana HOM05D000860 ORTHO05D003230 3.7e-14 81.6 114 42.1
FAN11G3204 Fragaria x ananassa HOM05D000860 ORTHO05D003230 4.9e-14 81.3 103 45.6
Sed0022692 Sechium edule HOM05D000860 ORTHO05D003230 4.9e-14 81.3 112 42.9
MSTRG.18972 Avicennia marina HOM05D000860 ORTHO05D003230 8.3e-14 80.5 125 41.6
Phvul.006G074500 Phaseolus vulgaris HOM05D000860 ORTHO05D003230 1.4e-13 79.7 94 47.9
Haze_24422 Corylus avellana HOM05D000860 ORTHO05D003230 1.8e-13 79.3 100 45.0
FAN16G1489 Fragaria x ananassa HOM05D000860 ORTHO05D003230 1.8e-13 79.3 102 44.1
Glyma.11G163400 Glycine max HOM05D000860 ORTHO05D003230 1.8e-13 79.3 94 43.6
Oeu026971.2 Olea europaea HOM05D000860 ORTHO05D003230 1.8e-13 79.3 114 41.2
Eucgr.A00626 Eucalyptus grandis HOM05D000860 ORTHO05D003230 2.4e-13 79.0 107 42.1
Dinv28700 Davidia involucrata HOM05D000860 ORTHO05D003230 5.4e-13 77.8 102 46.1
HPP92_003238 Vanilla planifolia HOM05D000860 ORTHO05D003230 5.4e-13 77.8 107 43.0
HPP92_025113 Vanilla planifolia HOM05D000860 ORTHO05D003230 5.4e-13 77.8 94 44.7
FAN21G0721 Fragaria x ananassa HOM05D000860 ORTHO05D003230 7.0e-13 77.4 97 44.3
Lj3A945T20 Lonicera japonica HOM05D000860 ORTHO05D003230 9.2e-13 77.0 110 43.6
Solyc06g007380.1 Solanum lycopersicum HOM05D000860 ORTHO05D003230 9.2e-13 77.0 94 46.8
Sopen06g002310 Solanum pennellii HOM05D000860 ORTHO05D003230 9.2e-13 77.0 94 46.8
ClCG10G022520 Citrullus lanatus HOM05D000860 ORTHO05D003230 1.2e-12 76.6 104 43.3
PGSC0003DMG400020561 Solanum tuberosum HOM05D000860 ORTHO05D003230 1.2e-12 76.6 94 47.9
Cpa.g.sc2.347 Carica papaya HOM05D000860 ORTHO05D003230 2.0e-12 75.9 97 42.3
Cfa011786 Carpinus fangiana HOM05D000860 ORTHO05D003230 2.7e-12 75.5 100 44.0
Lsat_1_v5_gn_5_149681 Lactuca sativa HOM05D000860 ORTHO05D003230 3.5e-12 75.1 107 47.7
Dinv12180 Davidia involucrata HOM05D000860 ORTHO05D003230 4.6e-12 74.7 87 46.0
TWI79G0172 Tripterygium wilfordii HOM05D000860 ORTHO05D003230 6.0e-12 74.3 109 42.2
HanXRQChr15g0463331 Helianthus annuus HOM05D000860 ORTHO05D003230 7.8e-12 73.9 104 42.3
CsaV3_3G033320 Cucumis sativus L. HOM05D000860 ORTHO05D003230 1.0e-11 73.6 102 41.2
unitig_27.g24876 Utricularia gibba HOM05D000860 ORTHO05D003230 1.0e-11 73.6 126 40.5
HanXRQChr01g0007051 Helianthus annuus HOM05D000860 ORTHO05D003230 1.3e-11 73.2 108 41.7
unitig_699.g19374 Utricularia gibba HOM05D000860 ORTHO05D003230 1.3e-11 73.2 116 40.5
Lj1P125T29 Lonicera japonica HOM05D000860 ORTHO05D003230 1.7e-11 72.8 100 42.0
GSVIVG01024625001 Vitis vinifera HOM05D000127 ORTHO05D003230 1.7e-11 72.8 101 39.6
CSS0013654 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D003230 2.3e-11 72.4 57 66.7
MELO3C009125.2 Cucumis melo HOM05D000860 ORTHO05D003230 3.0e-11 72.0 102 40.2
MD11G1059300 Malus domestica HOM05D000860 ORTHO05D003230 3.0e-11 72.0 103 43.7
Potri.013G153300 Populus trichocarpa HOM05D000860 ORTHO05D003230 6.6e-11 70.9 102 41.2
DCAR_028889 Daucus carota HOM05D000860 ORTHO05D003230 4.3e-10 68.2 111 39.6
Lj6g0019825 Lotus japonicus HOM05D000860 ORTHO05D003230 4.3e-10 68.2 93 41.9
Lalb_Chr20g0114681 Lupinus albus HOM05D000860 ORTHO05D003230 7.3e-10 67.4 96 41.7
ECA248G0775 Erigeron canadensis HOM05D000860 ORTHO05D003230 9.5e-10 67.0 81 43.2
Thecc.09G358600 Theobroma cacao HOM05D000860 ORTHO05D003230 1.2e-09 66.6 96 38.5
Gohir.D08G220800 Gossypium hirsutum HOM05D000860 ORTHO05D003230 1.6e-09 66.2 96 38.5
Lsat_1_v5_gn_9_36341 Lactuca sativa HOM05D000860 ORTHO05D003230 2.1e-09 65.9 106 43.4
Nitab4.5_0004880g0040 Nicotiana tabacum HOM05D000860 ORTHO05D003230 2.1e-09 65.9 95 45.3
Gohir.A08G203500 Gossypium hirsutum HOM05D000860 ORTHO05D003230 3.6e-09 65.1 96 37.5
COL.COLO4_11163 Corchorus olitorius HOM05D000860 ORTHO05D003230 8.0e-09 63.9 96 43.8
Cc01_g14910 Coffea canephora HOM05D000127 ORTHO05D003230 1.4e-08 63.2 105 40.0
Duzib168G0283 Durio zibethinus HOM05D000860 ORTHO05D003230 1.4e-08 63.2 96 39.6
Actinidia32603 Actinidia chinensis HOM05D000860 ORTHO05D003230 2.3e-08 62.4 95 42.1
Peaxi162Scf00193g00122 Petunia axillaris HOM05D000860 ORTHO05D003230 5.2e-08 61.2 96 46.9
MBI15_g40984_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D003230 8.9e-08 60.5 114 33.3
CAN.G1034.32 Capsicum annuum HOM05D000860 ORTHO05D003230 1.7e-06 56.2 109 34.9
MBI15_g01649_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D003230 1.7e-06 56.2 115 32.2
CANSAT54G1862 Cannabis sativa HOM05D000860 ORTHO05D003230 2.2e-06 55.8 95 38.9


User provided reference genes

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