Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06237 Brassica carinata HOM05D006476 ORTHO05D008178 2.5e-308 1061.2 521 100.0
BraA03t09413Z Brassica rapa HOM05D006476 ORTHO05D008178 1.9e-284 981.9 503 92.6
A03p00230 Brassica napus HOM05D006476 ORTHO05D008178 4.3e-284 980.7 503 92.4
C03p00370 Brassica napus HOM05D006476 ORTHO05D008178 3.7e-283 977.6 506 92.1
BcaB01g06105 Brassica carinata HOM05D006476 ORTHO05D008178 6.3e-283 976.9 506 92.1
BolC3t12605H Brassica oleracea HOM05D006476 ORTHO05D008178 6.3e-283 976.9 506 92.1
AL6G10460 Arabidopsis lyrata HOM05D006476 ORTHO05D008178 2.7e-278 961.4 509 89.8
Thhalv10013251m.g Eutrema salsugineum HOM05D006476 ORTHO05D008178 4.6e-278 960.7 504 90.7
CARHR211940 Cardamine hirsuta HOM05D006476 ORTHO05D008178 6.7e-277 956.8 509 89.2
Sp6g40850 Schrenkiella parvula HOM05D006476 ORTHO05D008178 1.1e-276 956.1 496 91.1
AT5G01590 Arabidopsis thaliana HOM05D006476 ORTHO05D008178 2.8e-275 951.4 509 88.4
Carub.0006s0024 Capsella rubella HOM05D006476 ORTHO05D008178 5.3e-274 947.2 509 88.2
Aa31LG1G23210 Aethionema arabicum HOM05D006476 ORTHO05D008178 2.4e-258 895.2 509 81.7
THA.LOC104816184 Tarenaya hassleriana HOM05D006476 ORTHO05D008178 6.5e-256 887.1 504 83.3
Thecc.05G008700 Theobroma cacao HOM05D006476 ORTHO05D008178 2.0e-233 812.4 502 74.3
Gohir.D04G134700 Gossypium hirsutum HOM05D006476 ORTHO05D008178 7.3e-231 803.9 497 74.8
Cpa.g.sc162.36 Carica papaya HOM05D006476 ORTHO05D008178 9.5e-231 803.5 506 73.3
Gorai.012G118300 Gossypium raimondii HOM05D006476 ORTHO05D008178 9.5e-231 803.5 497 74.8
Gohir.A01G229200 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.4e-229 799.7 503 74.0
PGR031G1226 Punica granatum HOM05D006476 ORTHO05D008178 8.9e-229 797.0 501 73.1
CiPaw.10G160000 Carya illinoinensis HOM05D006476 ORTHO05D008178 1.5e-228 796.2 490 74.5
Gohir.A04G095014 Gossypium hirsutum HOM05D006476 ORTHO05D008178 2.0e-228 795.8 497 74.2
Gorai.002G265900 Gossypium raimondii HOM05D006476 ORTHO05D008178 7.5e-228 793.9 502 72.7
COL.COLO4_14474 Corchorus olitorius HOM05D006476 ORTHO05D008178 1.6e-225 786.2 503 72.4
Gohir.D01G219100 Gossypium hirsutum HOM05D006476 ORTHO05D008178 1.6e-225 786.2 502 72.1
Prupe.6G283400 Prunus persica HOM05D006476 ORTHO05D008178 1.0e-224 783.5 495 73.3
QL07p034180 Quercus lobata HOM05D006476 ORTHO05D008178 3.9e-224 781.6 497 73.4
Haze_21064 Corylus avellana HOM05D006476 ORTHO05D008178 7.3e-223 777.3 492 73.4
Duzib093G1646 Durio zibethinus HOM05D006476 ORTHO05D008178 9.5e-223 776.9 503 70.8
RcHm_v2.0_Chr3g0461841 Rosa chinensis HOM05D006476 ORTHO05D008178 2.1e-222 775.8 500 72.6
GSVIVG01030297001 Vitis vinifera HOM05D006476 ORTHO05D008178 2.8e-222 775.4 493 74.2
FAN05G4924 Fragaria x ananassa HOM05D006476 ORTHO05D008178 1.4e-221 773.1 505 71.7
ClCG10G022410 Citrullus lanatus HOM05D006476 ORTHO05D008178 1.8e-221 772.7 505 72.3
FvH4_6g10790 Fragaria vesca HOM05D006476 ORTHO05D008178 8.9e-221 770.4 505 71.5
Cfa017133 Carpinus fangiana HOM05D006476 ORTHO05D008178 2.0e-220 769.2 492 72.8
FAN05G3786 Fragaria x ananassa HOM05D006476 ORTHO05D008178 2.6e-220 768.8 505 71.5
FAN09G2591 Fragaria x ananassa HOM05D006476 ORTHO05D008178 2.6e-220 768.8 505 71.3
FAN09G3668 Fragaria x ananassa HOM05D006476 ORTHO05D008178 2.6e-220 768.8 505 71.3
MD12G1177900 Malus domestica HOM05D006476 ORTHO05D008178 2.6e-220 768.8 493 72.4
Potri.016G123900 Populus trichocarpa HOM05D006476 ORTHO05D008178 2.6e-220 768.8 495 71.3
TAR633G1736 Trochodendron aralioides HOM05D006476 ORTHO05D008178 2.6e-220 768.8 494 71.9
Nn2g10977 Nelumbo nucifera HOM05D006476 ORTHO05D008178 7.5e-220 767.3 498 71.7
Ciclev10011480m.g Citrus clementina HOM05D006476 ORTHO05D008178 2.2e-219 765.8 504 72.0
Sed0000477 Sechium edule HOM05D006476 ORTHO05D008178 6.4e-219 764.2 504 71.0
Nitab4.5_0004676g0040 Nicotiana tabacum HOM05D006476 ORTHO05D008178 2.4e-218 762.3 501 71.5
Eucgr.A00607 Eucalyptus grandis HOM05D006476 ORTHO05D008178 3.2e-218 761.9 501 71.1
FAN14G4129 Fragaria x ananassa HOM05D006476 ORTHO05D008178 1.2e-217 760.0 517 69.8
Solyc09g013100.3 Solanum lycopersicum HOM05D006476 ORTHO05D008178 2.7e-217 758.8 496 71.8
Hma1.2p1_0479F.1_g161560 Hydrangea macrophylla HOM05D006476 ORTHO05D008178 7.8e-217 757.3 495 70.5
Sopen09g006940 Solanum pennellii HOM05D006476 ORTHO05D008178 1.3e-216 756.5 496 71.6
MSTRG.10202 Avicennia marina HOM05D006476 ORTHO05D008178 1.1e-215 753.4 484 74.0
MELO3C009137.2 Cucumis melo HOM05D006476 ORTHO05D008178 1.1e-215 753.4 489 71.4
Dinv10268 Davidia involucrata HOM05D006476 ORTHO05D008178 2.5e-215 752.3 503 69.6
Nitab4.5_0000230g0070 Nicotiana tabacum HOM05D006476 ORTHO05D008178 2.5e-215 752.3 508 70.1
TWI53G1048 Tripterygium wilfordii HOM05D006476 ORTHO05D008178 9.5e-215 750.4 490 71.8
Sabra16G0118700 Salix brachista HOM05D006476 ORTHO05D008178 1.4e-213 746.5 524 66.4
CANSAT35G1014 Cannabis sativa HOM05D006476 ORTHO05D008178 9.9e-212 740.3 502 68.9
CAN.G1194.2 Capsicum annuum HOM05D006476 ORTHO05D008178 1.3e-211 740.0 506 70.9
Cc06_g00920 Coffea canephora HOM05D006476 ORTHO05D008178 1.3e-211 740.0 491 70.5
CsaV3_3G033460 Cucumis sativus L. HOM05D006476 ORTHO05D008178 2.2e-211 739.2 502 68.7
Atru.chr8.2316 Acer truncatum HOM05D006476 ORTHO05D008178 2.9e-211 738.8 506 68.4
Migut.L02041 Erythranthe guttata HOM05D006476 ORTHO05D008178 8.3e-211 737.3 481 71.9
Aqoxy1G01315 Aquilegia oxysepala HOM05D006476 ORTHO05D008178 1.4e-210 736.5 506 68.6
PSO765G0213 Papaver somniferum HOM05D006476 ORTHO05D008178 2.7e-209 732.3 507 68.4
Manes.09G110300 Manihot esculenta HOM05D006476 ORTHO05D008178 3.0e-208 728.8 499 68.3
PSO349G0327 Papaver somniferum HOM05D006476 ORTHO05D008178 1.5e-207 726.5 515 67.0
PGSC0003DMG400029192 Solanum tuberosum HOM05D006476 ORTHO05D008178 5.6e-207 724.5 566 62.9
Lalb_Chr12g0207111 Lupinus albus HOM05D006476 ORTHO05D008178 2.8e-206 722.2 502 66.9
Sc07g0006480 Simmondsia chinensis HOM05D006476 ORTHO05D008178 3.6e-206 721.8 486 68.7
Lj3g0015173 Lotus japonicus HOM05D006476 ORTHO05D008178 1.8e-205 719.5 499 65.5
HanXRQChr10g0287121 Helianthus annuus HOM05D006476 ORTHO05D008178 3.1e-205 718.8 504 66.3
EL10Ac5g12509 Beta vulgaris HOM05D006476 ORTHO05D008178 4.0e-205 718.4 498 68.5
unitig_26.g9345 Utricularia gibba HOM05D006476 ORTHO05D008178 1.2e-204 716.8 510 67.1
CDE04G2527 Ceratophyllum demersum HOM05D006476 ORTHO05D008178 4.4e-204 714.9 496 67.1
Lsat_1_v5_gn_9_37301 Lactuca sativa HOM05D006476 ORTHO05D008178 1.4e-202 709.9 520 64.8
ECA247G0212 Erigeron canadensis HOM05D006476 ORTHO05D008178 1.9e-202 709.5 500 65.8
Ah.12g058950 Amaranthus hybridus HOM05D006476 ORTHO05D008178 9.2e-202 707.2 502 65.9
arahy.Tifrunner.gnm1.ann1.86RN6H Arachis hypogaea HOM05D006476 ORTHO05D008178 1.2e-201 706.8 514 64.2
Hund10946 Selenicereus undatus HOM05D006476 ORTHO05D008178 2.7e-201 705.7 506 64.8
arahy.Tifrunner.gnm1.ann1.39JBYW Arachis hypogaea HOM05D006476 ORTHO05D008178 7.8e-201 704.1 518 63.5
CSS0013060 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 1.7e-200 703.0 494 67.8
CSS0023949 Camellia sinensis var. sinensis HOM05D006476 ORTHO05D008178 1.7e-200 703.0 494 67.8
Glyma.01G124200 Glycine max HOM05D006476 ORTHO05D008178 1.8e-197 693.0 506 63.4
Lj3A863T42 Lonicera japonica HOM05D006476 ORTHO05D008178 2.4e-197 692.6 462 69.3
ATR0789G002 Amborella trichopoda HOM05D006476 ORTHO05D008178 3.2e-194 682.2 484 66.3
VMungo0331G1781 Vigna mungo HOM05D006476 ORTHO05D008178 6.0e-193 677.9 508 61.4
Phvul.010G065700 Phaseolus vulgaris HOM05D006476 ORTHO05D008178 3.9e-192 675.2 508 61.4
AUR62030513 Chenopodium quinoa HOM05D006476 ORTHO05D008178 9.3e-186 654.1 491 64.4
SGA_v2.0_scaffold110G31194 Striga asiatica HOM05D006476 ORTHO05D008178 3.5e-185 652.1 517 60.7
Peaxi162Scf01132g00347 Petunia axillaris HOM05D006476 ORTHO05D008178 2.3e-184 649.4 428 71.5
HPP92_001920 Vanilla planifolia HOM05D006476 ORTHO05D008178 6.7e-184 647.9 510 61.0
DCAR_018674 Daucus carota HOM05D006476 ORTHO05D008178 6.4e-179 631.3 431 69.1
Solyc09g015470.4 Solanum lycopersicum HOM05D006476 ORTHO05D008178 1.1e-178 630.6 496 63.1
Oeu038728.1 Olea europaea HOM05D006476 ORTHO05D008178 7.4e-175 617.8 500 62.6
Medtr4g014600 Medicago truncatula HOM05D006476 ORTHO05D008178 3.1e-173 612.5 500 58.6
Dinv12144 Davidia involucrata HOM05D006476 ORTHO05D008178 4.0e-173 612.1 353 78.8
TPR.G5241 Trifolium pratense HOM05D006476 ORTHO05D008178 6.5e-171 604.7 500 58.0
Actinidia29077 Actinidia chinensis HOM05D006476 ORTHO05D008178 2.1e-169 599.7 510 57.3
Ca_20338_v3 Cicer arietinum L. HOM05D006476 ORTHO05D008178 2.5e-167 592.8 502 58.2
Psat7g247200 Pisum sativum HOM05D006476 ORTHO05D008178 8.2e-166 587.8 454 60.4
CAN.G168.26 Capsicum annuum HOM05D006476 ORTHO05D008178 1.2e-164 583.9 421 66.5
Glyma.03G050400 Glycine max HOM05D006476 ORTHO05D008178 4.8e-158 562.0 406 67.0
SEGI_26269 Sequoiadendron giganteum HOM05D006476 ORTHO05D008178 5.5e-122 442.2 399 54.1
Pp3c1_41280 Physcomitrium patens HOM05D006476 ORTHO05D008178 1.2e-119 434.5 395 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2114 Anthoceros agrestis HOM05D006476 ORTHO05D008178 5.7e-119 432.2 394 51.8
Mapoly0062s0099 Marchantia polymorpha HOM05D006476 ORTHO05D008178 1.7e-115 420.6 381 52.0
arahy.Tifrunner.gnm1.ann1.36T17X Arachis hypogaea HOM05D006476 ORTHO05D008178 1.0e-112 411.4 261 70.1
SMO364G0439 Selaginella moellendorffii HOM05D006476 ORTHO05D008178 8.3e-110 401.7 390 48.2
AUR62030780 Chenopodium quinoa HOM05D006476 ORTHO05D008178 4.8e-73 279.6 172 73.3
Oeu061560.1 Olea europaea HOM05D006476 ORTHO05D008178 1.0e-62 245.4 162 67.3
MD04G1164400 Malus domestica HOM05D006476 ORTHO05D008178 2.5e-53 214.2 120 80.8
MD04G1164300 Malus domestica HOM05D006476 ORTHO05D008178 8.8e-35 152.5 112 65.2
CBR_g7951 Chara braunii HOM05D006476 ORTHO05D008178 2.0e-34 151.4 324 29.6
Haze_21099 Corylus avellana HOM05D006476 ORTHO05D008178 1.3e-30 138.7 130 54.6
BcaNung03295 Brassica carinata HOM05D006476 ORTHO05D008178 4.0e-27 127.1 83 75.9
C09p74660 Brassica napus HOM05D000872 ORTHO05D000777 4.0e-27 127.1 83 75.9
BolC9t60200H Brassica oleracea HOM05D006476 ORTHO05D008178 4.0e-27 127.1 83 75.9
ATR0810G038 Amborella trichopoda HOM05D006476 ORTHO05D008178 9.4e-21 105.9 79 58.2
RcHm_v2.0_Chr3g0461921 Rosa chinensis HOM05D006476 ORTHO05D008178 1.2e-15 89.0 55 69.1
Cre17.g727100 Chlamydomonas reinhardtii HOM05D006476 ORTHO05D008178 4.9e-09 67.0 71 38.0
MCO15G063 Micromonas commoda HOM05D006476 ORTHO05D008178 2.7e-07 61.2 58 36.2


User provided reference genes

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