Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 1.2e-228 796.2 422 100.0
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 4.5e-207 724.5 424 91.3
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 1.7e-201 706.1 422 87.4
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 8.3e-201 703.7 449 85.1
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 1.3e-198 696.4 423 87.0
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 1.1e-197 693.3 423 86.3
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 1.1e-197 693.3 424 87.0
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.6e-196 689.5 422 87.7
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.5e-194 682.9 422 86.0
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 5.7e-194 681.0 422 85.3
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 3.5e-191 671.8 457 81.0
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 3.5e-191 671.8 423 84.9
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 2.1e-180 636.0 422 81.8
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 6.6e-174 614.4 440 76.4
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 8.6e-174 614.0 422 82.0
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 3.8e-169 598.6 432 78.2
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 5.8e-154 548.1 432 69.2
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 9.1e-123 444.5 433 57.0
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 1.8e-118 430.3 404 57.9
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 1.8e-118 430.3 436 55.0
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 9.7e-117 424.5 436 54.6
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.2e-116 423.3 433 55.0
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 2.4e-115 419.9 432 54.9
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 2.0e-114 416.8 435 54.0
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 3.4e-114 416.0 436 53.9
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 6.5e-113 411.8 429 53.8
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 1.4e-112 410.6 431 53.6
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 1.8e-110 403.7 434 53.7
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 8.8e-110 401.4 432 53.7
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 2.6e-109 399.8 433 52.9
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 3.3e-109 399.4 436 53.0
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 2.2e-108 396.7 435 52.4
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 1.1e-107 394.4 385 56.1
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 3.5e-106 389.4 388 56.4
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 7.7e-106 388.3 426 52.6
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 7.7e-106 388.3 407 53.3
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 7.7e-106 388.3 385 55.8
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 2.2e-105 386.7 407 53.1
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 2.5e-104 383.3 379 55.4
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 5.5e-104 382.1 425 52.5
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 2.3e-102 376.7 429 51.5
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 2.6e-101 373.2 382 53.9
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 5.7e-101 372.1 437 52.4
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 1.8e-99 367.1 430 49.5
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 9.1e-99 364.8 442 50.0
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 9.1e-99 364.8 389 53.0
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.5e-96 356.7 437 49.4
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.5e-96 356.7 448 49.1
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 2.1e-95 353.6 387 50.9
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.0e-94 351.3 387 52.2
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 1.0e-94 351.3 389 50.4
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.4e-94 350.9 402 50.0
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 1.4e-94 350.9 412 49.5
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 1.8e-94 350.5 430 47.0
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 2.3e-94 350.1 439 49.7
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.0e-93 347.1 402 49.0
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 9.8e-93 344.7 426 48.1
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 1.8e-91 340.5 399 46.4
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 3.1e-91 339.7 405 49.6
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 7.0e-91 338.6 409 48.4
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 7.0e-91 338.6 399 48.1
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 1.6e-90 337.4 406 48.5
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 2.0e-90 337.0 397 47.9
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 5.9e-90 335.5 431 45.9
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 5.9e-90 335.5 374 52.1
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 1.0e-89 334.7 431 48.5
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 2.9e-89 333.2 400 47.5
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 5.0e-89 332.4 385 50.1
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 1.1e-88 331.3 408 48.0
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 2.5e-88 330.1 394 48.2
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 2.5e-88 330.1 514 43.2
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 2.1e-87 327.0 373 50.4
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 5.2e-86 322.4 373 49.3
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 8.9e-86 321.6 388 48.5
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 2.0e-85 320.5 430 44.7
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 1.3e-84 317.8 402 45.8
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 4.1e-83 312.8 392 46.4
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 5.6e-80 302.4 300 57.7
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 4.0e-78 296.2 383 46.0
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 8.9e-78 295.0 383 45.7
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 8.9e-78 295.0 383 44.9
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 9.2e-75 285.0 291 55.0
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.9e-73 279.6 291 54.3
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 3.9e-73 279.6 318 52.2
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 1.9e-72 277.3 421 41.8
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 2.3e-70 270.4 436 41.5
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 6.8e-70 268.9 291 52.9
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 2.4e-67 260.4 542 35.8
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 7.0e-67 258.8 318 45.3
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 5.1e-65 252.7 390 40.3
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 4.3e-64 249.6 216 58.3
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 8.1e-63 245.4 293 49.1
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 4.0e-62 243.0 308 45.5
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 2.0e-61 240.7 346 41.9
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 4.6e-58 229.6 250 51.6
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 9.5e-56 221.9 427 36.3
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 1.4e-54 218.0 282 45.4
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 6.8e-54 215.7 201 58.2
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 7.1e-51 205.7 393 38.2
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 3.5e-42 176.8 404 33.7
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 5.6e-40 169.5 376 32.4
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 9.6e-40 168.7 376 32.4
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 6.4e-36 156.0 198 44.9
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 1.2e-34 151.8 374 31.3
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 3.0e-33 147.1 312 34.0
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 8.7e-33 145.6 101 69.3
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 8.1e-31 139.0 403 28.5
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.6e-26 124.8 160 47.5
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 3.5e-26 123.6 94 63.8
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 4.3e-24 116.7 407 27.0
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 9.6e-24 115.5 332 34.9
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 4.9e-20 103.2 130 47.7
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 1.4e-19 101.7 114 51.8
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 1.2e-18 98.6 167 40.1
BolC3t12644H Brassica oleracea HOM05D006045 ORTHO05D007678 1.4e-14 85.1 64 78.1
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 6.9e-14 82.8 111 46.8
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 6.5e-12 76.3 231 32.9


User provided reference genes

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