Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06181 Brassica carinata HOM05D001509 ORTHO05D001361 7.9e-71 270.4 142 100.0
BcaB01g06177 Brassica carinata HOM05D001509 ORTHO05D001361 4.0e-30 135.2 72 95.8
BcaB01g06194 Brassica carinata HOM05D001509 ORTHO05D001361 4.0e-30 135.2 72 95.8
A03p00840 Brassica napus HOM05D001509 ORTHO05D001361 1.3e-28 130.2 72 91.7
C03p01090 Brassica napus HOM05D001509 ORTHO05D001361 1.3e-28 130.2 72 91.7
BraA03t09467Z Brassica rapa HOM05D001509 ORTHO05D001361 1.3e-28 130.2 72 91.7
BcaB01g06179 Brassica carinata HOM05D001509 ORTHO05D001361 1.1e-27 127.1 72 88.9
BolC3t12669H Brassica oleracea HOM05D001509 ORTHO05D001361 1.1e-27 127.1 72 88.9
Sp6g39930 Schrenkiella parvula HOM05D001509 ORTHO05D001361 2.4e-27 125.9 72 84.7
CARHR210760 Cardamine hirsuta HOM05D001509 ORTHO05D001361 1.6e-26 123.2 71 83.1
Thhalv10015638m.g Eutrema salsugineum HOM05D001509 ORTHO05D001361 1.0e-25 120.6 72 80.6
AL6G11860 Arabidopsis lyrata HOM05D001509 ORTHO05D001361 1.3e-25 120.2 71 81.7
AT5G02590 Arabidopsis thaliana HOM05D001509 ORTHO05D001361 1.3e-25 120.2 68 82.4
Carub.0006s0139 Capsella rubella HOM05D001509 ORTHO05D001361 8.5e-25 117.5 72 76.4
Aa31LG1G22210 Aethionema arabicum HOM05D001509 ORTHO05D001361 1.9e-24 116.3 74 75.7
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 4.8e-20 101.7 72 65.3
Thecc.05G046500 Theobroma cacao HOM05D001509 ORTHO05D001361 1.5e-16 90.1 68 57.4
Atru.chr8.2481 Acer truncatum HOM05D001509 ORTHO05D001361 3.3e-16 89.0 67 59.7
CARHR163460 Cardamine hirsuta HOM05D001509 ORTHO05D001361 7.2e-16 87.8 68 55.9
Thhalv10010528m.g Eutrema salsugineum HOM05D001509 ORTHO05D001361 7.2e-16 87.8 69 55.1
Gohir.D13G097800 Gossypium hirsutum HOM05D001509 ORTHO05D001361 9.5e-16 87.4 68 54.4
Gorai.001G250200 Gossypium raimondii HOM05D001509 ORTHO05D001361 9.5e-16 87.4 68 54.4
AL5G34490 Arabidopsis lyrata HOM05D001509 ORTHO05D001361 1.2e-15 87.0 68 54.4
Potri.016G080000 Populus trichocarpa HOM05D001509 ORTHO05D001361 1.2e-15 87.0 68 55.9
AT3G53560 Arabidopsis thaliana HOM05D001509 ORTHO05D001361 1.6e-15 86.7 68 54.4
Gohir.A13G090200 Gossypium hirsutum HOM05D001509 ORTHO05D001361 2.8e-15 85.9 68 54.4
Potri.006G213600 Populus trichocarpa HOM05D001509 ORTHO05D001361 2.8e-15 85.9 72 50.0
Cpa.g.sc114.2 Carica papaya HOM05D001509 ORTHO05D001361 3.6e-15 85.5 68 52.9
CARHR132190 Cardamine hirsuta HOM05D001509 ORTHO05D001361 4.7e-15 85.1 68 54.4
Ciclev10012060m.g Citrus clementina HOM05D001509 ORTHO05D001361 4.7e-15 85.1 68 54.4
Sabra16G0085900 Salix brachista HOM05D001509 ORTHO05D001361 4.7e-15 85.1 68 52.9
Sabra16G0088000 Salix brachista HOM05D001509 ORTHO05D001361 4.7e-15 85.1 68 52.9
Carub.0004s1932 Capsella rubella HOM05D001509 ORTHO05D001361 6.1e-15 84.7 67 55.2
Carub.0005s2013 Capsella rubella HOM05D001509 ORTHO05D001361 6.1e-15 84.7 67 53.7
PGR004G1896 Punica granatum HOM05D001509 ORTHO05D001361 6.1e-15 84.7 68 52.9
A07p21730 Brassica napus HOM05D000434 ORTHO05D001361 8.0e-15 84.3 67 53.7
BraA07t29855Z Brassica rapa HOM05D000434 ORTHO05D001361 8.0e-15 84.3 67 53.7
Manes.08G075200 Manihot esculenta HOM05D001509 ORTHO05D001361 8.0e-15 84.3 68 52.9
Sabra06G0164500 Salix brachista HOM05D001509 ORTHO05D001361 1.0e-14 84.0 72 51.4
Sp5g08780 Schrenkiella parvula HOM05D001509 ORTHO05D001361 1.0e-14 84.0 67 53.7
AL4G33790 Arabidopsis lyrata HOM05D001509 ORTHO05D001361 1.4e-14 83.6 72 51.4
COL.COLO4_14876 Corchorus olitorius HOM05D001509 ORTHO05D001361 1.4e-14 83.6 68 52.9
Duzib128G0996 Durio zibethinus HOM05D001509 ORTHO05D001361 1.4e-14 83.6 68 52.9
TWI74G0580 Tripterygium wilfordii HOM05D001509 ORTHO05D001361 1.4e-14 83.6 68 52.9
Aa31LG10G9570 Aethionema arabicum HOM05D001509 ORTHO05D001361 1.8e-14 83.2 68 51.5
A03p20630 Brassica napus HOM05D001509 ORTHO05D001361 2.3e-14 82.8 72 54.2
Thhalv10017513m.g Eutrema salsugineum HOM05D001509 ORTHO05D001361 2.3e-14 82.8 72 48.6
AT2G37400 Arabidopsis thaliana HOM05D001509 ORTHO05D001361 3.0e-14 82.4 72 50.0
BolC6t37341H Brassica oleracea HOM05D000434 ORTHO05D001361 4.0e-14 82.0 67 52.2
BcaB02g07775 Brassica carinata HOM05D001509 ORTHO05D001361 6.8e-14 81.3 67 50.7
Eucgr.A01225 Eucalyptus grandis HOM05D001509 ORTHO05D001361 6.8e-14 81.3 68 52.9
FvH4_6g14610 Fragaria vesca HOM05D001509 ORTHO05D001361 6.8e-14 81.3 68 50.0
TWI77G0741 Tripterygium wilfordii HOM05D001509 ORTHO05D001361 6.8e-14 81.3 68 50.0
BcaC08g44635 Brassica carinata HOM05D001509 ORTHO05D001361 8.9e-14 80.9 67 50.7
C06p21530 Brassica napus HOM05D000434 ORTHO05D001361 8.9e-14 80.9 67 50.7
Gohir.A04G079100 Gossypium hirsutum HOM05D001509 ORTHO05D001361 1.2e-13 80.5 68 48.5
Gorai.009G423400 Gossypium raimondii HOM05D001509 ORTHO05D001361 1.2e-13 80.5 68 48.5
Aa31LG5G22810 Aethionema arabicum HOM05D001509 ORTHO05D001361 2.0e-13 79.7 72 45.8
Prupe.6G248600 Prunus persica HOM05D001509 ORTHO05D001361 2.0e-13 79.7 68 50.0
A04p28550 Brassica napus HOM05D001509 ORTHO05D001361 2.6e-13 79.3 68 50.0
BraA04t18333Z Brassica rapa HOM05D001509 ORTHO05D001361 2.6e-13 79.3 68 50.0
AUR62040878 Chenopodium quinoa HOM05D001509 ORTHO05D001361 2.6e-13 79.3 68 50.0
FAN14G0342 Fragaria x ananassa HOM05D001509 ORTHO05D001361 2.6e-13 79.3 68 48.5
BcaB06g28988 Brassica carinata HOM05D001509 ORTHO05D001361 3.4e-13 79.0 68 48.5
Glyma.03G173800 Glycine max HOM05D001509 ORTHO05D001361 3.4e-13 79.0 67 53.7
Gohir.D04G118300 Gossypium hirsutum HOM05D001509 ORTHO05D001361 3.4e-13 79.0 68 47.1
Lj1g0016233 Lotus japonicus HOM05D001509 ORTHO05D001361 3.4e-13 79.0 68 48.5
Nn2g12863 Nelumbo nucifera HOM05D001509 ORTHO05D001361 3.4e-13 79.0 68 48.5
RcHm_v2.0_Chr3g0467701 Rosa chinensis HOM05D001509 ORTHO05D001361 3.4e-13 79.0 68 50.0
Medtr7g100328 Medicago truncatula HOM05D001509 ORTHO05D001361 4.4e-13 78.6 68 48.5
Psat3g048240 Pisum sativum HOM05D001509 ORTHO05D001361 4.4e-13 78.6 68 50.0
Sc20g0004440 Simmondsia chinensis HOM05D001509 ORTHO05D001361 4.4e-13 78.6 68 47.1
AUR62043010 Chenopodium quinoa HOM05D001509 ORTHO05D001361 5.7e-13 78.2 68 48.5
FAN05G2100 Fragaria x ananassa HOM05D001509 ORTHO05D001361 5.7e-13 78.2 68 50.0
FAN09G0072 Fragaria x ananassa HOM05D001509 ORTHO05D001361 5.7e-13 78.2 68 50.0
BcaC02g07523 Brassica carinata HOM05D001509 ORTHO05D001361 7.5e-13 77.8 68 47.1
C04p65880 Brassica napus HOM05D001509 ORTHO05D001361 7.5e-13 77.8 68 47.1
BolC4t28092H Brassica oleracea HOM05D001509 ORTHO05D001361 7.5e-13 77.8 68 47.1
Cfa017445 Carpinus fangiana HOM05D001509 ORTHO05D001361 7.5e-13 77.8 68 51.5
Manes.09G085800 Manihot esculenta HOM05D001509 ORTHO05D001361 7.5e-13 77.8 68 50.0
Sp4g19720 Schrenkiella parvula HOM05D001509 ORTHO05D001361 7.5e-13 77.8 71 47.9
TAR636G3525 Trochodendron aralioides HOM05D001509 ORTHO05D001361 9.8e-13 77.4 68 47.1
FAN02G2018 Fragaria x ananassa HOM05D001509 ORTHO05D001361 1.3e-12 77.0 68 48.5
MSTRG.5694 Avicennia marina HOM05D001509 ORTHO05D001361 1.7e-12 76.6 68 45.6
Ah.10g032690 Amaranthus hybridus HOM05D001509 ORTHO05D001361 2.2e-12 76.3 72 45.8
Lsat_1_v5_gn_1_55000 Lactuca sativa HOM05D001509 ORTHO05D001361 3.7e-12 75.5 67 49.3
Haze_20718 Corylus avellana HOM05D001509 ORTHO05D001361 4.9e-12 75.1 68 50.0
Nn2g10513 Nelumbo nucifera HOM05D001509 ORTHO05D001361 4.9e-12 75.1 68 47.1
TAR633G2683 Trochodendron aralioides HOM05D001509 ORTHO05D001361 4.9e-12 75.1 70 45.7
DCAR_009261 Daucus carota HOM05D001509 ORTHO05D001361 6.3e-12 74.7 71 45.1
Aqoxy4G03054 Aquilegia oxysepala HOM05D001509 ORTHO05D001361 8.3e-12 74.3 68 45.6
Aqoxy2G01993 Aquilegia oxysepala HOM05D001509 ORTHO05D001361 1.1e-11 73.9 67 47.8
CiPaw.09G187400 Carya illinoinensis HOM05D001509 ORTHO05D001361 1.1e-11 73.9 68 48.5
EL10Ac2g03245 Beta vulgaris HOM05D001509 ORTHO05D001361 1.4e-11 73.6 72 43.1
TPR.G21453 Trifolium pratense HOM05D001509 ORTHO05D001361 2.4e-11 72.8 68 45.6
Ca_08796_v3 Cicer arietinum L. HOM05D001509 ORTHO05D001361 3.1e-11 72.4 68 45.6
Lalb_Chr01g0019181 Lupinus albus HOM05D001509 ORTHO05D001361 3.1e-11 72.4 68 45.6
Lalb_Chr20g0113111 Lupinus albus HOM05D001509 ORTHO05D001361 3.1e-11 72.4 68 45.6
MD12G1136200 Malus domestica HOM05D001509 ORTHO05D001361 3.1e-11 72.4 68 44.1
Oeu024371.1 Olea europaea HOM05D001509 ORTHO05D001361 3.1e-11 72.4 72 44.4
ECA248G2102 Erigeron canadensis HOM05D001509 ORTHO05D001361 4.1e-11 72.0 68 45.6
CDE08G0309 Ceratophyllum demersum HOM05D001509 ORTHO05D001361 7.0e-11 71.2 67 43.3
ClCG10G020870 Citrullus lanatus HOM05D001509 ORTHO05D001361 7.0e-11 71.2 71 43.7
MELO3C009284.2 Cucumis melo HOM05D001509 ORTHO05D001361 7.0e-11 71.2 78 41.0
GSVIVG01025601001 Vitis vinifera HOM05D001509 ORTHO05D001361 7.0e-11 71.2 68 41.2
Migut.J00377 Erythranthe guttata HOM05D001509 ORTHO05D001361 9.2e-11 70.9 68 41.2
CANSAT80G1471 Cannabis sativa HOM05D001509 ORTHO05D001361 1.2e-10 70.5 68 42.6
Hma1.2p1_0350F.1_g132460 Hydrangea macrophylla HOM05D001509 ORTHO05D001361 1.2e-10 70.5 68 45.6
Lalb_Chr25g0289431 Lupinus albus HOM05D001509 ORTHO05D001361 1.2e-10 70.5 67 44.8
QL07p046613 Quercus lobata HOM05D001509 ORTHO05D001361 1.2e-10 70.5 67 44.8
CSS0022606 Camellia sinensis var. sinensis HOM05D001509 ORTHO05D001361 1.6e-10 70.1 68 42.6
DCAR_020861 Daucus carota HOM05D001509 ORTHO05D001361 1.6e-10 70.1 68 41.2
Glyma.19G174700 Glycine max HOM05D001509 ORTHO05D001361 3.5e-10 68.9 67 46.3
ATR0033G032 Amborella trichopoda HOM05D001509 ORTHO05D001361 4.5e-10 68.6 68 39.7
Dinv35652 Davidia involucrata HOM05D001509 ORTHO05D001361 4.5e-10 68.6 68 39.7
Lj5g0016548 Lotus japonicus HOM05D001509 ORTHO05D001361 4.5e-10 68.6 72 41.7
Oeu060057.1 Olea europaea HOM05D001509 ORTHO05D001361 4.5e-10 68.6 67 44.8
unitig_26.g9207 Utricularia gibba HOM05D001509 ORTHO05D001361 4.5e-10 68.6 67 40.3
Carub.0003s0859 Capsella rubella HOM05D001509 ORTHO05D001361 7.8e-10 67.8 68 45.6
PSO339G3197 Papaver somniferum HOM05D001509 ORTHO05D001361 7.8e-10 67.8 70 42.9
PSO384G1022 Papaver somniferum HOM05D001509 ORTHO05D001361 7.8e-10 67.8 70 42.9
CsaV3_4G024640 Cucumis sativus L. HOM05D001509 ORTHO05D001361 1.0e-09 67.4 78 44.9
Solyc09g005740.3 Solanum lycopersicum HOM05D001509 ORTHO05D001361 1.0e-09 67.4 71 42.3
Sopen09g001630 Solanum pennellii HOM05D001509 ORTHO05D001361 1.0e-09 67.4 71 42.3
Sopen10g034030 Solanum pennellii HOM05D001509 ORTHO05D001361 1.3e-09 67.0 68 39.7
CAN.G125.4 Capsicum annuum HOM05D001509 ORTHO05D001361 1.7e-09 66.6 68 42.6
Peaxi162Scf00039g00073 Petunia axillaris HOM05D001509 ORTHO05D001361 1.7e-09 66.6 71 43.7
Phvul.001G171200 Phaseolus vulgaris HOM05D001509 ORTHO05D001361 2.3e-09 66.2 67 43.3
Sed0026287 Sechium edule HOM05D001509 ORTHO05D001361 2.9e-09 65.9 72 40.3
MELO3C003097.2 Cucumis melo HOM05D001509 ORTHO05D001361 3.8e-09 65.5 78 43.6
PSO206G0027 Papaver somniferum HOM05D001509 ORTHO05D001361 3.8e-09 65.5 68 35.3
PSO339G1527 Papaver somniferum HOM05D001509 ORTHO05D001361 3.8e-09 65.5 68 33.8
PGSC0003DMG400011057 Solanum tuberosum HOM05D001509 ORTHO05D001361 3.8e-09 65.5 68 39.7
VMungo0720G0062 Vigna mungo HOM05D001509 ORTHO05D001361 5.0e-09 65.1 70 42.9
Cc06_g03120 Coffea canephora HOM05D001509 ORTHO05D001361 6.6e-09 64.7 68 36.8
HanXRQChr01g0026541 Helianthus annuus HOM05D001509 ORTHO05D001361 6.6e-09 64.7 68 41.2
ClCG04G008510 Citrullus lanatus HOM05D001509 ORTHO05D001361 8.6e-09 64.3 78 42.3
HPP92_019458 Vanilla planifolia HOM05D001509 ORTHO05D001361 8.6e-09 64.3 68 38.2
PGSC0003DMG400023906 Solanum tuberosum HOM05D001509 ORTHO05D001361 1.1e-08 63.9 68 41.2
VMungo1383G1394 Vigna mungo HOM05D001509 ORTHO05D001361 1.1e-08 63.9 67 40.3
Actinidia13119 Actinidia chinensis HOM05D001509 ORTHO05D001361 1.5e-08 63.5 68 38.2
AT3G09490 Arabidopsis thaliana HOM05D001509 ORTHO05D001361 1.9e-08 63.2 68 42.6
SGA_v2.0_scaffold126G33840 Striga asiatica HOM05D001509 ORTHO05D001361 1.9e-08 63.2 68 38.2
Solyc10g085900.3 Solanum lycopersicum HOM05D001509 ORTHO05D001361 2.5e-08 62.8 67 37.3
CSS0017481 Camellia sinensis var. sinensis HOM05D001509 ORTHO05D001361 3.3e-08 62.4 69 39.1
Dinv37218 Davidia involucrata HOM05D001509 ORTHO05D001361 3.3e-08 62.4 68 39.7
PGSC0003DMG400040850 Solanum tuberosum HOM05D001509 ORTHO05D001361 3.3e-08 62.4 67 35.8
AagrBONN_evm.TU.Sc2ySwM_117.1754 Anthoceros agrestis HOM05D001509 ORTHO05D001361 5.6e-08 61.6 68 35.3
CsaV3_3G035140 Cucumis sativus L. HOM05D001509 ORTHO05D001361 5.6e-08 61.6 68 38.2
MBI14_g32001_MAGBIO Magnolia biondii HOM05D001509 ORTHO05D001361 5.6e-08 61.6 59 42.4
Nitab4.5_0010623g0010 Nicotiana tabacum HOM05D001509 ORTHO05D001361 5.6e-08 61.6 68 38.2
BraA09t40122Z Brassica rapa HOM05D001509 ORTHO05D001361 7.3e-08 61.2 68 38.2
A09p46580 Brassica napus HOM05D001509 ORTHO05D001361 9.5e-08 60.8 67 40.3
Oeu049194.1 Olea europaea HOM05D001509 ORTHO05D001361 9.5e-08 60.8 67 40.3
Sed0001176 Sechium edule HOM05D001509 ORTHO05D001361 9.5e-08 60.8 71 42.3
CANSAT78G1784 Cannabis sativa HOM05D001509 ORTHO05D001361 1.2e-07 60.5 73 45.2
Psat6g068840 Pisum sativum HOM05D001509 ORTHO05D001361 1.6e-07 60.1 68 39.7
Sopen10g035280 Solanum pennellii HOM05D001509 ORTHO05D001361 2.1e-07 59.7 67 34.3
BcaB01g00263 Brassica carinata HOM05D001509 ORTHO05D001361 2.8e-07 59.3 67 38.8
BcaNung07019 Brassica carinata HOM05D001509 ORTHO05D001361 2.8e-07 59.3 67 38.8
Sed0009424 Sechium edule HOM05D001509 ORTHO05D001361 2.8e-07 59.3 74 37.8
C08p28900 Brassica napus HOM05D001509 ORTHO05D001361 3.6e-07 58.9 67 37.3
Glyma.13G133400 Glycine max HOM05D001509 ORTHO05D001361 3.6e-07 58.9 67 40.3
arahy.Tifrunner.gnm1.ann1.53LB3Q Arachis hypogaea HOM05D001509 ORTHO05D001361 4.7e-07 58.5 66 39.4
arahy.Tifrunner.gnm1.ann1.AM6VYI Arachis hypogaea HOM05D001509 ORTHO05D001361 4.7e-07 58.5 66 39.4
HPP92_001462 Vanilla planifolia HOM05D001509 ORTHO05D001361 4.7e-07 58.5 67 40.3
Haze_01573 Corylus avellana HOM05D001509 ORTHO05D001361 6.1e-07 58.2 68 45.6
Lj4g0008841 Lotus japonicus HOM05D001509 ORTHO05D001361 6.1e-07 58.2 68 44.1
Phvul.007G159400 Phaseolus vulgaris HOM05D001509 ORTHO05D001361 6.1e-07 58.2 67 38.8
Rhsim04G0153100 Rhododendron simsii HOM05D001509 ORTHO05D001361 6.1e-07 58.2 68 38.2
Sed0003574 Sechium edule HOM05D001509 ORTHO05D001361 8.0e-07 57.8 67 41.8
Nitab4.5_0002995g0040 Nicotiana tabacum HOM05D001509 ORTHO05D001361 1.0e-06 57.4 68 36.8
CAN.G687.5 Capsicum annuum HOM05D001509 ORTHO05D001361 1.8e-06 56.6 68 32.4
Nitab4.5_0002818g0070 Nicotiana tabacum HOM05D001509 ORTHO05D001361 1.8e-06 56.6 65 36.9
Pp3c2_28020 Physcomitrium patens HOM05D001509 ORTHO05D001361 1.8e-06 56.6 69 37.7
Lalb_Chr07g0188111 Lupinus albus HOM05D001509 ORTHO05D001361 2.3e-06 56.2 72 41.7
Cpa.g.sc2.100 Carica papaya HOM05D001509 ORTHO05D001361 4.0e-06 55.5 68 41.2
Nn4g24877 Nelumbo nucifera HOM05D001509 ORTHO05D001361 5.2e-06 55.1 67 43.3
Duzib268G0867 Durio zibethinus HOM05D001509 ORTHO05D001361 6.8e-06 54.7 68 42.6
Solyc01g008160.4 Solanum lycopersicum HOM05D001509 ORTHO05D001361 6.8e-06 54.7 68 42.6
PGSC0003DMG400036477 Solanum tuberosum HOM05D001509 ORTHO05D001361 6.8e-06 54.7 68 42.6
EL10Ac4g08728 Beta vulgaris HOM05D001509 ORTHO05D001361 8.9e-06 54.3 46 47.8
Mapoly0157s0006 Marchantia polymorpha HOM05D001509 ORTHO05D001361 8.9e-06 54.3 70 31.4
Nitab4.5_0000725g0110 Nicotiana tabacum HOM05D001509 ORTHO05D001361 8.9e-06 54.3 63 34.9


User provided reference genes

Program Settings