Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 2.4e-187 658.7 335 100.0
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 1.8e-161 572.8 383 79.4
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 2.0e-157 559.3 341 84.5
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 2.6e-157 558.9 341 85.0
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.7e-156 556.2 341 84.8
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.9e-155 552.7 360 81.4
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.3e-153 546.6 341 83.3
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 2.3e-153 545.8 341 83.0
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.1e-152 543.5 341 83.0
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.9e-152 542.7 335 83.6
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 2.1e-151 539.3 341 81.5
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 2.4e-150 535.8 404 72.5
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 4.0e-150 535.0 409 71.4
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 2.5e-147 525.8 365 75.3
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.7e-140 503.1 367 72.5
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.6e-138 496.5 253 100.0
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 5.3e-126 454.9 341 67.2
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 2.9e-124 449.1 341 67.2
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 5.5e-123 444.9 361 63.4
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 2.7e-122 442.6 341 66.0
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 7.9e-122 441.0 361 63.2
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.4e-121 440.3 341 65.4
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 8.8e-121 437.6 341 65.1
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.1e-120 437.2 361 62.6
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 3.3e-120 435.6 341 65.1
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 3.3e-120 435.6 341 64.8
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 5.7e-120 434.9 341 65.1
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 7.4e-120 434.5 341 63.9
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.3e-119 431.4 341 63.0
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.8e-118 429.9 341 63.6
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 3.1e-118 429.1 341 65.1
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.3e-118 428.3 341 64.8
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 5.3e-118 428.3 341 63.0
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 7.0e-118 427.9 341 63.3
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 2.0e-117 426.4 341 62.8
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 3.5e-117 425.6 341 62.8
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 4.5e-117 425.2 341 62.8
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 5.9e-117 424.9 341 63.0
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 5.9e-117 424.9 341 62.8
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.3e-116 423.7 341 62.8
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.3e-116 423.7 337 64.1
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.3e-116 423.7 341 63.6
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.2e-116 422.9 341 63.6
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 2.2e-116 422.9 337 63.5
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.8e-116 422.2 341 63.9
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 6.5e-116 421.4 341 63.3
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 6.5e-116 421.4 341 62.2
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.1e-115 420.6 341 62.8
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.1e-115 420.6 341 62.2
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.9e-115 419.9 341 61.9
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 3.2e-115 419.1 341 62.2
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 3.2e-115 419.1 341 63.3
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 4.2e-115 418.7 341 61.6
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 5.5e-115 418.3 341 60.7
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.5e-115 418.3 341 62.5
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.2e-114 417.2 341 61.3
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 2.1e-114 416.4 341 62.8
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 4.7e-114 415.2 342 61.4
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 8.0e-114 414.5 341 62.5
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.4e-113 413.7 344 62.5
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.4e-113 413.7 341 62.5
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 2.3e-113 412.9 341 61.9
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 3.0e-113 412.5 341 61.6
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 3.0e-113 412.5 341 60.1
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 4.0e-113 412.1 367 59.1
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 4.0e-113 412.1 341 61.6
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 6.7e-113 411.4 341 62.2
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 3.3e-112 409.1 341 61.9
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 4.4e-112 408.7 341 61.9
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 5.7e-112 408.3 379 58.0
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 7.5e-112 407.9 341 61.3
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 9.7e-112 407.5 341 60.7
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.7e-111 405.6 341 61.0
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 3.7e-111 405.6 350 60.0
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.1e-110 404.1 341 60.4
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.1e-110 401.0 341 60.1
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 9.1e-110 401.0 341 60.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 1.0e-108 397.5 341 60.1
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.0e-108 397.5 341 61.6
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.7e-108 396.7 343 61.5
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.9e-108 396.0 341 57.8
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 4.7e-106 388.7 341 59.5
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 6.8e-105 384.8 341 58.1
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 2.6e-104 382.9 339 58.7
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 3.2e-99 365.9 422 48.6
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 3.2e-99 365.9 432 47.9
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 2.1e-98 363.2 355 54.9
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.0e-97 359.4 309 60.5
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.0e-97 359.4 309 60.8
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 5.7e-96 355.1 299 61.9
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-95 354.0 337 57.3
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.2e-95 353.2 299 61.5
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.0e-93 346.7 268 66.4
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.5e-93 345.9 343 56.0
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.0e-92 344.4 310 58.1
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.7e-92 343.6 299 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 8.0e-90 334.7 342 50.3
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 4.0e-89 332.4 345 53.0
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 6.8e-89 331.6 297 58.6
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 7.5e-88 328.2 349 48.7
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 3.7e-87 325.9 255 64.7
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.8e-86 323.6 235 69.4
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 7.0e-86 321.6 332 52.7
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.7e-84 317.0 214 72.0
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 5.0e-84 315.5 339 48.7
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 9.5e-83 311.2 336 52.1
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 8.3e-79 298.1 344 47.7
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.6e-77 293.9 635 32.9
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 3.5e-77 292.7 218 67.4
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.0e-76 291.2 340 45.0
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 3.2e-70 269.6 204 65.2
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.9e-63 245.7 219 60.3
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 6.0e-61 238.8 161 73.3
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 3.9e-60 236.1 222 57.7
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 5.4e-54 215.7 159 67.3
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.3e-52 211.1 126 83.3
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.3e-50 204.5 162 63.6
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 2.4e-46 190.3 189 56.1
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 7.9e-45 185.3 283 37.5
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 9.6e-43 178.3 139 64.7
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 3.2e-30 136.7 80 86.2
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 9.3e-30 135.2 73 91.8
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.6e-29 134.4 123 53.7
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 5.1e-28 129.4 113 57.5
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 5.1e-28 129.4 194 37.6
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.3e-23 114.8 120 50.8
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 6.5e-15 85.9 319 26.3
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 8.5e-15 85.5 43 88.4
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 7.4e-11 72.4 59 59.3
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 8.2e-10 68.9 59 57.6
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.4e-09 68.2 60 55.0
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.0e-08 64.3 69 47.8
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.9e-06 57.8 43 60.5


User provided reference genes

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