Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06094 Brassica carinata HOM05D003378 ORTHO05D003942 1.1e-128 463.4 242 100.0
C03p00550 Brassica napus HOM05D003378 ORTHO05D003942 1.1e-128 463.4 242 100.0
BolC3t12621H Brassica oleracea HOM05D003378 ORTHO05D003942 8.0e-124 447.2 248 95.6
BcaC06g31967 Brassica carinata HOM05D003378 ORTHO05D003942 1.3e-121 439.9 238 95.4
Sp6g40570 Schrenkiella parvula HOM05D003378 ORTHO05D003942 1.6e-119 433.0 238 95.0
BcaNung02769 Brassica carinata HOM05D003378 ORTHO05D003942 1.3e-118 429.9 233 93.6
A10p33660 Brassica napus HOM05D003378 ORTHO05D003942 6.6e-118 427.6 243 92.2
Thhalv10013276m.g Eutrema salsugineum HOM05D003378 ORTHO05D003942 1.1e-117 426.8 238 94.1
AT5G01220 Arabidopsis thaliana HOM05D003378 ORTHO05D003942 5.6e-117 424.5 233 88.8
A03p00390 Brassica napus HOM05D003378 ORTHO05D003942 7.3e-117 424.1 257 87.9
BraA03t09430Z Brassica rapa HOM05D003378 ORTHO05D003942 7.3e-117 424.1 257 87.9
AL6G10970 Arabidopsis lyrata HOM05D003378 ORTHO05D003942 9.5e-117 423.7 237 93.2
Carub.0006s0067 Capsella rubella HOM05D003378 ORTHO05D003942 9.5e-117 423.7 237 92.8
CARHR211550 Cardamine hirsuta HOM05D003378 ORTHO05D003942 1.5e-114 416.4 233 92.3
Aa31LG1G22850 Aethionema arabicum HOM05D003378 ORTHO05D003942 2.0e-114 416.0 244 85.2
C09p74570 Brassica napus HOM05D003378 ORTHO05D003942 1.7e-110 402.9 233 91.4
BolC9t60189H Brassica oleracea HOM05D003378 ORTHO05D003942 1.7e-110 402.9 233 89.3
THA.LOC104823284 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 2.8e-108 395.6 237 80.2
THA.LOC104827042 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 6.8e-107 391.0 233 79.4
Cpa.g.sc163.3 Carica papaya HOM05D003378 ORTHO05D003942 1.4e-104 383.3 237 78.1
COL.COLO4_14573 Corchorus olitorius HOM05D003378 ORTHO05D003942 1.9e-104 382.9 236 77.5
Gohir.A01G225800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.9e-104 382.9 233 77.7
CiPaw.09G207100 Carya illinoinensis HOM05D003378 ORTHO05D003942 3.2e-104 382.1 233 78.5
Eucgr.A00516 Eucalyptus grandis HOM05D003378 ORTHO05D003942 7.1e-104 380.9 233 77.3
Gorai.002G261700 Gossypium raimondii HOM05D003378 ORTHO05D003942 7.1e-104 380.9 233 77.3
Haze_20961 Corylus avellana HOM05D003378 ORTHO05D003942 9.2e-104 380.6 233 77.3
Hma1.2p1_0244F.1_g101280 Hydrangea macrophylla HOM05D003378 ORTHO05D003942 9.2e-104 380.6 237 76.4
Thecc.05G020500 Theobroma cacao HOM05D003378 ORTHO05D003942 9.2e-104 380.6 237 77.2
Gohir.A04G088800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.2e-103 380.2 233 78.5
Gorai.012G112200 Gossypium raimondii HOM05D003378 ORTHO05D003942 1.6e-103 379.8 233 78.1
Manes.08G089250 Manihot esculenta HOM05D003378 ORTHO05D003942 2.7e-103 379.0 237 76.8
Dinv37075 Davidia involucrata HOM05D003378 ORTHO05D003942 1.7e-102 376.3 237 75.9
Cfa017247 Carpinus fangiana HOM05D003378 ORTHO05D003942 2.3e-102 375.9 233 76.4
Gohir.D01G215500 Gossypium hirsutum HOM05D003378 ORTHO05D003942 2.3e-102 375.9 233 76.4
Potri.006G097600 Populus trichocarpa HOM05D003378 ORTHO05D003942 1.1e-101 373.6 233 75.5
unitig_0.g1457 Utricularia gibba HOM05D003378 ORTHO05D003942 1.5e-101 373.2 233 76.4
GSVIVG01033998001 Vitis vinifera HOM05D003378 ORTHO05D003942 1.9e-101 372.9 237 76.4
Duzib128G1405 Durio zibethinus HOM05D003378 ORTHO05D003942 3.3e-101 372.1 237 76.4
Aqoxy2G00958 Aquilegia oxysepala HOM05D003378 ORTHO05D003942 5.6e-101 371.3 233 73.4
Prupe.6G271800 Prunus persica HOM05D003378 ORTHO05D003942 5.6e-101 371.3 237 75.5
RcHm_v2.0_Chr3g0463701 Rosa chinensis HOM05D003378 ORTHO05D003942 7.3e-101 370.9 237 75.1
Oeu015017.1 Olea europaea HOM05D003378 ORTHO05D003942 9.5e-101 370.5 240 73.3
Potri.016G112600 Populus trichocarpa HOM05D003378 ORTHO05D003942 1.2e-100 370.2 233 74.7
Atru.chr8.2207 Acer truncatum HOM05D003378 ORTHO05D003942 3.6e-100 368.6 237 72.2
CSS0025489 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 3.6e-100 368.6 237 74.7
CiPaw.10G154700 Carya illinoinensis HOM05D003378 ORTHO05D003942 3.6e-100 368.6 233 74.7
MBI14_g04426_MAGBIO Magnolia biondii HOM05D003378 ORTHO05D003942 4.7e-100 368.2 233 74.7
Sc01g0006660 Simmondsia chinensis HOM05D003378 ORTHO05D003942 4.7e-100 368.2 233 75.5
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 6.2e-100 367.9 237 74.3
MD12G1161400 Malus domestica HOM05D003378 ORTHO05D003942 6.2e-100 367.9 240 74.2
unitig_88.g27657 Utricularia gibba HOM05D003378 ORTHO05D003942 6.2e-100 367.9 233 75.5
MD04G1148000 Malus domestica HOM05D003378 ORTHO05D003942 1.1e-99 367.1 237 74.7
TAR369G0131 Trochodendron aralioides HOM05D003378 ORTHO05D003942 1.1e-99 367.1 237 75.5
vmacro22553 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 1.1e-99 367.1 237 74.7
VMungo0331G1068 Vigna mungo HOM05D003378 ORTHO05D003942 1.1e-99 367.1 235 73.6
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 1.4e-99 366.7 237 73.8
Phvul.010G005100 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 1.4e-99 366.7 235 73.2
CSS0046394 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 1.8e-99 366.3 237 74.7
Lj3g0001695 Lotus japonicus HOM05D003378 ORTHO05D003942 2.3e-99 365.9 236 74.2
BcaC06g31965 Brassica carinata HOM05D003378 ORTHO05D003942 3.1e-99 365.5 238 79.4
Medtr7g067340 Medicago truncatula HOM05D003378 ORTHO05D003942 3.1e-99 365.5 237 72.6
Oeu030526.1 Olea europaea HOM05D003378 ORTHO05D003942 3.1e-99 365.5 262 68.7
Psat3g130760 Pisum sativum HOM05D003378 ORTHO05D003942 4.0e-99 365.2 237 72.6
FAN14G4021 Fragaria x ananassa HOM05D003378 ORTHO05D003942 6.8e-99 364.4 237 78.1
Lj2C81T6 Lonicera japonica HOM05D003378 ORTHO05D003942 6.8e-99 364.4 233 74.2
TPR.G1566 Trifolium pratense HOM05D003378 ORTHO05D003942 6.8e-99 364.4 237 71.7
Ciclev10011473m.g Citrus clementina HOM05D003378 ORTHO05D003942 8.9e-99 364.0 237 73.0
FAN02G2254 Fragaria x ananassa HOM05D003378 ORTHO05D003942 8.9e-99 364.0 237 76.4
EL10Ac5g11530 Beta vulgaris HOM05D003378 ORTHO05D003942 1.2e-98 363.6 237 73.8
Lalb_Chr07g0193451 Lupinus albus HOM05D003378 ORTHO05D003942 1.2e-98 363.6 233 73.8
unitig_27.g24826 Utricularia gibba HOM05D003378 ORTHO05D003942 1.2e-98 363.6 232 73.3
Glyma.01G113000 Glycine max HOM05D003378 ORTHO05D003942 1.5e-98 363.2 238 72.3
CANSAT35G1853 Cannabis sativa HOM05D003378 ORTHO05D003942 2.0e-98 362.8 237 73.0
FvH4_6g11930 Fragaria vesca HOM05D003378 ORTHO05D003942 2.0e-98 362.8 237 78.1
FAN14G4776 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.0e-98 362.8 237 78.1
TWI77G0412 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 2.0e-98 362.8 231 74.0
Glyma.03G078300 Glycine max HOM05D003378 ORTHO05D003942 2.6e-98 362.5 239 71.5
Ah.02g114930 Amaranthus hybridus HOM05D003378 ORTHO05D003942 3.4e-98 362.1 236 74.2
FAN09G0987 Fragaria x ananassa HOM05D003378 ORTHO05D003942 3.4e-98 362.1 237 78.1
MELO3C009186.2 Cucumis melo HOM05D003378 ORTHO05D003942 4.4e-98 361.7 233 72.1
Sabra06G0075100 Salix brachista HOM05D003378 ORTHO05D003942 4.4e-98 361.7 233 73.0
Actinidia13774 Actinidia chinensis HOM05D003378 ORTHO05D003942 5.8e-98 361.3 237 74.7
arahy.Tifrunner.gnm1.ann1.FDLX2Z Arachis hypogaea HOM05D003378 ORTHO05D003942 5.8e-98 361.3 233 73.0
AUR62020689 Chenopodium quinoa HOM05D003378 ORTHO05D003942 5.8e-98 361.3 237 73.8
Nitab4.5_0004912g0010 Nicotiana tabacum HOM05D003378 ORTHO05D003942 7.6e-98 360.9 227 74.4
FAN05G4401 Fragaria x ananassa HOM05D003378 ORTHO05D003942 9.9e-98 360.5 237 78.1
Lalb_Chr03g0043071 Lupinus albus HOM05D003378 ORTHO05D003942 9.9e-98 360.5 233 72.1
TWI53G0359 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 9.9e-98 360.5 230 73.0
arahy.Tifrunner.gnm1.ann1.EK5UG7 Arachis hypogaea HOM05D003378 ORTHO05D003942 1.3e-97 360.1 233 73.0
Ca_07617_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 1.3e-97 360.1 237 72.2
CsaV3_3G034100 Cucumis sativus L. HOM05D003378 ORTHO05D003942 1.3e-97 360.1 231 72.7
Nitab4.5_0000652g0220 Nicotiana tabacum HOM05D003378 ORTHO05D003942 1.3e-97 360.1 227 74.0
HanXRQChr10g0287061 Helianthus annuus HOM05D003378 ORTHO05D003942 1.7e-97 359.8 231 73.6
Peaxi162Scf00009g01921 Petunia axillaris HOM05D003378 ORTHO05D003942 2.9e-97 359.0 233 71.7
SalBow5G3819 Salvia bowleyana HOM05D003378 ORTHO05D003942 2.9e-97 359.0 233 72.1
Ca_20313_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 6.4e-97 357.8 236 72.0
SalBow5G4142 Salvia bowleyana HOM05D003378 ORTHO05D003942 8.3e-97 357.5 233 71.7
AUR62025812 Chenopodium quinoa HOM05D003378 ORTHO05D003942 1.1e-96 357.1 236 73.3
Psat7g247920 Pisum sativum HOM05D003378 ORTHO05D003942 1.1e-96 357.1 231 72.7
DCAR_028819 Daucus carota HOM05D003378 ORTHO05D003942 1.9e-96 356.3 224 73.7
Migut.J00201 Erythranthe guttata HOM05D003378 ORTHO05D003942 1.9e-96 356.3 234 70.9
Lsat_1_v5_gn_5_155081 Lactuca sativa HOM05D003378 ORTHO05D003942 1.9e-96 356.3 237 70.9
SalBow4G2524 Salvia bowleyana HOM05D003378 ORTHO05D003942 2.4e-96 355.9 233 70.4
ClCG10G021890 Citrullus lanatus HOM05D003378 ORTHO05D003942 3.2e-96 355.5 233 70.8
MSTRG.19023 Avicennia marina HOM05D003378 ORTHO05D003942 4.1e-96 355.1 233 70.8
Phvul.008G106900 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 4.1e-96 355.1 237 70.5
PGR031G3689 Punica granatum HOM05D003378 ORTHO05D003942 4.1e-96 355.1 272 64.7
Gohir.D04G129200 Gossypium hirsutum HOM05D003378 ORTHO05D003942 5.4e-96 354.8 221 77.4
SalBow4G1026 Salvia bowleyana HOM05D003378 ORTHO05D003942 5.4e-96 354.8 233 70.4
Actinidia05349 Actinidia chinensis HOM05D003378 ORTHO05D003942 7.1e-96 354.4 233 72.5
Cc06_g01590 Coffea canephora HOM05D003378 ORTHO05D003942 7.1e-96 354.4 233 71.2
ECA247G2610 Erigeron canadensis HOM05D003378 ORTHO05D003942 7.1e-96 354.4 232 71.1
PSO339G6012 Papaver somniferum HOM05D003378 ORTHO05D003942 1.2e-95 353.6 240 70.4
PSO801G0661 Papaver somniferum HOM05D003378 ORTHO05D003942 1.2e-95 353.6 240 70.4
Sabra16G0108300 Salix brachista HOM05D003378 ORTHO05D003942 2.1e-95 352.8 233 71.2
Sopen10g034560 Solanum pennellii HOM05D003378 ORTHO05D003942 2.7e-95 352.4 233 69.5
PGSC0003DMG400011091 Solanum tuberosum HOM05D003378 ORTHO05D003942 2.7e-95 352.4 233 69.5
Lj1g0014660 Lotus japonicus HOM05D003378 ORTHO05D003942 3.5e-95 352.1 237 70.5
TPR.G15969 Trifolium pratense HOM05D003378 ORTHO05D003942 3.5e-95 352.1 236 69.9
Glyma.18G197600 Glycine max HOM05D003378 ORTHO05D003942 4.6e-95 351.7 237 70.0
CAN.G1297.6 Capsicum annuum HOM05D003378 ORTHO05D003942 6.0e-95 351.3 228 71.1
Migut.L01997 Erythranthe guttata HOM05D003378 ORTHO05D003942 6.0e-95 351.3 228 73.7
Solyc10g085100.2 Solanum lycopersicum HOM05D003378 ORTHO05D003942 1.0e-94 350.5 233 69.1
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 1.3e-94 350.1 233 70.0
Glyma.07G146400 Glycine max HOM05D003378 ORTHO05D003942 1.3e-94 350.1 237 70.5
Lalb_Chr13g0291251 Lupinus albus HOM05D003378 ORTHO05D003942 2.3e-94 349.4 231 71.0
Actinidia01107 Actinidia chinensis HOM05D003378 ORTHO05D003942 5.1e-94 348.2 233 71.7
HanXRQChr11g0329601 Helianthus annuus HOM05D003378 ORTHO05D003942 8.6e-94 347.4 240 68.8
Medtr4g015260 Medicago truncatula HOM05D003378 ORTHO05D003942 8.6e-94 347.4 236 69.5
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 1.1e-93 347.1 233 70.0
Lsat_1_v5_gn_9_36000 Lactuca sativa HOM05D003378 ORTHO05D003942 1.5e-93 346.7 232 69.0
Os07g0100300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 3.3e-93 345.5 240 68.3
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 4.3e-93 345.1 233 68.7
Sed0023271 Sechium edule HOM05D003378 ORTHO05D003942 4.3e-93 345.1 233 69.1
PGSC0003DMG400020317 Solanum tuberosum HOM05D003378 ORTHO05D003942 5.6e-93 344.7 233 69.1
Peaxi162Scf00141g00615 Petunia axillaris HOM05D003378 ORTHO05D003942 7.3e-93 344.4 233 68.2
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 2.1e-92 342.8 233 68.2
Os01g0142300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 2.1e-92 342.8 239 69.0
ECA248G0513 Erigeron canadensis HOM05D003378 ORTHO05D003942 3.6e-92 342.0 231 69.7
Zm00001eb297970 Zea mays HOM05D003378 ORTHO05D003942 1.1e-91 340.5 229 69.9
Sopen09g007150 Solanum pennellii HOM05D003378 ORTHO05D003942 1.4e-91 340.1 233 69.1
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 3.1e-91 339.0 233 69.1
vmacro08599 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 4.0e-91 338.6 237 69.6
HPP92_012629 Vanilla planifolia HOM05D003378 ORTHO05D003942 4.4e-90 335.1 229 72.1
Zm00001eb335670 Zea mays HOM05D003378 ORTHO05D003942 4.9e-89 331.6 239 66.9
Lj3C956T2 Lonicera japonica HOM05D003378 ORTHO05D003942 6.4e-89 331.3 235 65.1
Duzib093G0826 Durio zibethinus HOM05D003378 ORTHO05D003942 1.6e-87 326.6 237 69.6
CDE02G3708 Ceratophyllum demersum HOM05D003378 ORTHO05D003942 3.5e-87 325.5 237 65.4
SGA_v2.0_scaffold85G26755 Striga asiatica HOM05D003378 ORTHO05D003942 3.5e-87 325.5 233 65.2
Hund22726 Selenicereus undatus HOM05D003378 ORTHO05D003942 6.0e-87 324.7 237 68.4
HPP92_019420 Vanilla planifolia HOM05D003378 ORTHO05D003942 1.0e-86 323.9 233 67.0
TAR623G0363 Trochodendron aralioides HOM05D003378 ORTHO05D003942 1.7e-86 323.2 205 76.6
DCAR_024027 Daucus carota HOM05D003378 ORTHO05D003942 6.6e-86 321.2 224 68.3
Manes.09G103000 Manihot esculenta HOM05D003378 ORTHO05D003942 2.5e-85 319.3 234 69.2
Duzib106G1409 Durio zibethinus HOM05D003378 ORTHO05D003942 2.1e-84 316.2 237 66.7
SEGI_03332 Sequoiadendron giganteum HOM05D003378 ORTHO05D003942 1.1e-83 313.9 226 63.7
SGA_v2.0_scaffold106G30519 Striga asiatica HOM05D003378 ORTHO05D003942 9.0e-83 310.8 227 68.3
Rhsim05G0206900 Rhododendron simsii HOM05D003378 ORTHO05D003942 5.8e-82 308.1 233 66.5
Os03g0265100 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 2.7e-79 299.3 214 66.8
SMO118G0052 Selaginella moellendorffii HOM05D003378 ORTHO05D003942 3.6e-76 288.9 229 63.3
Pp3c9_8520 Physcomitrium patens HOM05D003378 ORTHO05D003942 1.2e-74 283.9 230 56.5
Mapoly0129s0040 Marchantia polymorpha HOM05D003378 ORTHO05D003942 1.5e-74 283.5 232 57.8
Pp3c15_4410 Physcomitrium patens HOM05D003378 ORTHO05D003942 2.0e-74 283.1 217 60.4
Rhsim04G0166600 Rhododendron simsii HOM05D003378 ORTHO05D003942 2.4e-72 276.2 237 60.8
AagrBONN_evm.TU.Sc2ySwM_228.713 Anthoceros agrestis HOM05D003378 ORTHO05D003942 3.2e-72 275.8 224 57.1
Zm00001eb011720 Zea mays HOM05D003378 ORTHO05D003942 1.7e-57 226.9 149 73.2
Cre01.g038550 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 2.3e-54 216.5 219 49.3
Nn2g11403 Nelumbo nucifera HOM05D003378 ORTHO05D003942 6.9e-51 204.9 237 46.0
CBR_g3329 Chara braunii HOM05D003378 ORTHO05D003942 2.0e-50 203.4 176 60.8
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 1.4e-48 197.2 207 48.8
Cre16.g689150 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 1.4e-43 180.6 263 40.3
MCO07G378 Micromonas commoda HOM05D003378 ORTHO05D003942 4.8e-36 155.6 209 43.1
Nn2g13633 Nelumbo nucifera HOM05D003378 ORTHO05D003942 5.9e-34 148.7 110 70.0
TPR.G1586 Trifolium pratense HOM05D003378 ORTHO05D003942 8.0e-31 138.3 95 62.1
Dinv14534 Davidia involucrata HOM05D003378 ORTHO05D003942 1.0e-30 137.9 83 74.7
Actinidia29123 Actinidia chinensis HOM05D003378 ORTHO05D003942 4.0e-30 136.0 86 74.4
ATR0618G034 Amborella trichopoda HOM05D003378 ORTHO05D003942 7.5e-29 131.7 74 77.0
TPR.G15967 Trifolium pratense HOM05D003378 ORTHO05D003942 6.5e-25 118.6 236 33.1
HanXRQChr04g0127691 Helianthus annuus HOM05D003378 ORTHO05D003942 1.5e-16 90.9 54 72.2
Cfa022298 Carpinus fangiana HOM05D003378 ORTHO05D003942 1.8e-14 84.0 204 31.4
MCO05G042 Micromonas commoda HOM05D003378 ORTHO05D049231 5.4e-11 72.4 187 31.6
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 9.2e-11 71.6 96 41.7
TPR.G20880 Trifolium pratense HOM05D003378 ORTHO05D003942 2.0e-10 70.5 54 59.3
PRCOL_00006760 Prasinoderma coloniale HOM05D003378 ORTHO05D049231 2.9e-09 66.6 190 29.5
Medtr4g015250 Medicago truncatula HOM05D003378 ORTHO05D003942 8.9e-06 55.1 34 70.6


User provided reference genes

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