Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06047 Brassica carinata HOM05D007846 ORTHO05D010837 2.3e-73 279.3 191 100.0
C03p03790 Brassica napus HOM05D007846 ORTHO05D010837 9.9e-69 263.8 201 90.5
A03p03350 Brassica napus HOM05D007846 ORTHO05D010837 2.8e-63 245.7 137 99.3
BcaB01g05692 Brassica carinata HOM05D007846 ORTHO05D010837 2.8e-47 192.6 148 77.0
BcaB01g06048 Brassica carinata HOM05D007846 ORTHO05D010837 4.8e-39 165.2 94 100.0
BcaB01g06046 Brassica carinata HOM05D007846 ORTHO05D010837 1.2e-29 134.0 219 45.7
BolC3t12914H Brassica oleracea HOM05D007846 ORTHO05D010837 5.9e-29 131.7 225 44.4
BraA03t09686Z Brassica rapa HOM05D007846 ORTHO05D010837 4.7e-26 122.1 214 45.3
A03p03340 Brassica napus HOM05D007846 ORTHO05D010837 1.0e-25 120.9 217 44.7
BcaC06g32487 Brassica carinata HOM05D007846 ORTHO05D010837 5.3e-22 108.6 98 69.4
Carub.0006s0651 Capsella rubella HOM05D007846 ORTHO05D010837 2.0e-21 106.7 155 48.4
C09p69650 Brassica napus HOM05D007846 ORTHO05D010837 2.6e-21 106.3 97 66.0
BolC9t59708H Brassica oleracea HOM05D007846 ORTHO05D010837 2.6e-21 106.3 97 66.0
AL6G17840 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 1.0e-20 104.4 146 51.4
C08p18270 Brassica napus HOM05D007846 ORTHO05D010837 2.2e-20 103.2 100 68.0
AT5G07530 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 5.0e-20 102.1 86 67.4
BolC8t49462H Brassica oleracea HOM05D007846 ORTHO05D010837 5.0e-20 102.1 100 67.0
BraA08t34994Z Brassica rapa HOM05D007846 ORTHO05D010837 5.0e-20 102.1 100 67.0
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 3.2e-19 99.4 89 65.2
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 3.2e-19 99.4 86 69.8
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 3.2e-19 99.4 89 65.2
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 3.2e-19 99.4 89 65.2
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 4.2e-19 99.0 100 64.0
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 4.2e-19 99.0 100 64.0
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 4.2e-19 99.0 100 64.0
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 9.4e-19 97.8 100 64.0
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 9.4e-19 97.8 100 64.0
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 1.6e-18 97.1 144 48.6
Sp6g35340 Schrenkiella parvula HOM05D007846 ORTHO05D371621 2.1e-18 96.7 153 49.7
Thhalv10013795m.g Eutrema salsugineum HOM05D007846 ORTHO05D195878 2.7e-18 96.3 173 45.1
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 6.1e-18 95.1 111 52.3
CARHR205620 Cardamine hirsuta HOM05D007846 ORTHO05D010837 1.4e-17 94.0 86 61.6
Carub.0006s0650 Capsella rubella HOM05D007846 ORTHO05D010837 3.0e-17 92.8 101 58.4
BcaC06g32488 Brassica carinata HOM05D021341 ORTHO05D093304 5.2e-17 92.0 117 56.4
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 2.6e-16 89.7 99 60.6
AT5G07540 Arabidopsis thaliana HOM05D007846 ORTHO05D031404 1.3e-15 87.4 87 58.6
C02p03180 Brassica napus HOM05D007846 ORTHO05D010837 1.3e-15 87.4 88 62.5
BolC2t06280H Brassica oleracea HOM05D007846 ORTHO05D010837 1.3e-15 87.4 88 62.5
AL6G17850 Arabidopsis lyrata HOM05D007846 ORTHO05D031404 1.7e-15 87.0 87 58.6
BcaB05g21610 Brassica carinata HOM05D007846 ORTHO05D010837 1.7e-15 87.0 86 60.5
Carub.0006s0658 Capsella rubella HOM05D007846 ORTHO05D010837 1.7e-15 87.0 83 62.7
AL6G17830 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 3.7e-15 85.9 110 51.8
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 6.3e-15 85.1 114 52.6
BcaC03g13197 Brassica carinata HOM05D007846 ORTHO05D010837 1.4e-14 84.0 87 62.1
Sp6g35350 Schrenkiella parvula HOM05D007846 ORTHO05D010837 3.1e-14 82.8 103 56.3
AT5G07520 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 5.3e-14 82.0 111 51.4
BraA02t04922Z Brassica rapa HOM05D007846 ORTHO05D010837 2.0e-13 80.1 88 60.2
Thhalv10014560m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 4.5e-13 79.0 82 58.5
C09p69670 Brassica napus HOM05D007846 ORTHO05D021761 5.9e-13 78.6 111 46.8
BolC9t59710H Brassica oleracea HOM05D007846 ORTHO05D021761 5.9e-13 78.6 111 46.8
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 1.3e-12 77.4 91 57.1
A10p29260 Brassica napus HOM05D007846 ORTHO05D010837 1.7e-12 77.0 143 42.0
BraA10t44972Z Brassica rapa HOM05D007846 ORTHO05D010837 1.7e-12 77.0 143 42.0
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 1.7e-12 77.0 95 52.6
Thhalv10014587m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 3.8e-12 75.9 58 74.1
BcaC06g32424 Brassica carinata HOM05D007846 ORTHO05D021761 8.5e-12 74.7 102 48.0
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 8.5e-12 74.7 94 48.9
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 1.5e-11 73.9 102 50.0
Aa31LG3G18890 Aethionema arabicum HOM05D007846 ORTHO05D010837 1.9e-11 73.6 116 42.2
A10p29300 Brassica napus HOM05D007846 ORTHO05D021761 2.5e-11 73.2 111 45.9
BraA10t44974Z Brassica rapa HOM05D007846 ORTHO05D021761 2.5e-11 73.2 111 45.9
BcaC06g32425 Brassica carinata HOM05D021341 ORTHO05D024077 4.2e-11 72.4 93 55.9
C09p69660 Brassica napus HOM05D021341 ORTHO05D024077 4.2e-11 72.4 93 55.9
BolC9t59709H Brassica oleracea HOM05D021341 ORTHO05D024077 4.2e-11 72.4 93 55.9
AL6G17810 Arabidopsis lyrata HOM05D007846 ORTHO05D038626 7.2e-11 71.6 90 53.3
BcaC06g32490 Brassica carinata HOM05D007846 ORTHO05D000624 7.2e-11 71.6 86 50.0
A10p29270 Brassica napus HOM05D021341 ORTHO05D024077 9.4e-11 71.2 96 56.2
BraA10t44973Z Brassica rapa HOM05D021341 ORTHO05D024077 9.4e-11 71.2 96 56.2
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 9.4e-11 71.2 94 45.7
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 9.4e-11 71.2 99 49.5
A10p29310 Brassica napus HOM05D007846 ORTHO05D023961 1.6e-10 70.5 83 50.6
BraA10t44975Z Brassica rapa HOM05D007846 ORTHO05D023961 1.6e-10 70.5 83 50.6
BcaC06g32423 Brassica carinata HOM05D007846 ORTHO05D023961 2.7e-10 69.7 83 50.6
C09p69680 Brassica napus HOM05D007846 ORTHO05D023961 2.7e-10 69.7 83 50.6
BolC9t59711H Brassica oleracea HOM05D007846 ORTHO05D023961 2.7e-10 69.7 83 50.6
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 3.6e-10 69.3 95 46.3
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 1.0e-09 67.8 104 44.2
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 5.2e-09 65.5 78 46.2
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 8.8e-09 64.7 94 43.6
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 1.2e-08 64.3 79 50.6
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 1.2e-08 64.3 79 50.6
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 1.5e-08 63.9 79 50.6
Carub.0006s0652 Capsella rubella HOM05D007846 ORTHO05D031404 2.0e-08 63.5 87 47.1
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 2.6e-08 63.2 90 46.7
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 1.7e-07 60.5 79 48.1
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 1.7e-07 60.5 79 48.1
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 3.7e-07 59.3 91 44.0
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 6.3e-07 58.5 82 47.6
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 6.3e-07 58.5 71 50.7
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 1.1e-06 57.8 82 47.6
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 1.1e-06 57.8 95 41.1
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 1.4e-06 57.4 91 41.8
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 1.8e-06 57.0 82 46.3
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 1.8e-06 57.0 82 46.3
C02p03190 Brassica napus HOM05D000805 ORTHO05D012592 2.4e-06 56.6 106 41.5
BolC2t06281H Brassica oleracea HOM05D000805 ORTHO05D012592 2.4e-06 56.6 106 41.5
Thhalv10015579m.g Eutrema salsugineum HOM05D000805 ORTHO05D196068 4.1e-06 55.8 82 45.1


User provided reference genes

Program Settings