Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 9.3e-65 250.4 157 100.0
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 4.6e-64 248.1 157 99.4
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 3.3e-62 241.9 162 96.3
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 3.3e-62 241.9 162 96.3
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 9.7e-54 213.8 163 89.6
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 9.7e-54 213.8 163 89.6
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 7.7e-51 204.1 162 81.5
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 2.2e-45 186.0 164 81.7
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 6.3e-45 184.5 165 69.1
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 8.5e-42 174.1 162 75.9
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 8.5e-42 174.1 162 75.9
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 1.9e-41 172.9 162 78.4
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 4.2e-41 171.8 162 75.3
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 4.2e-41 171.8 162 75.3
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 9.4e-41 170.6 162 75.9
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 1.2e-40 170.2 162 74.7
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 1.0e-39 167.2 162 75.3
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 3.9e-39 165.2 162 74.7
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 1.5e-38 163.3 162 74.1
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 1.4e-36 156.8 163 74.8
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 4.2e-33 145.2 146 76.0
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 1.5e-30 136.7 162 56.2
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 7.7e-27 124.4 158 51.3
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 3.8e-26 122.1 170 49.4
BolC3t12872H Brassica oleracea HOM05D003436 ORTHO05D003674 8.5e-26 120.9 97 77.3
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 2.5e-25 119.4 163 50.9
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 9.4e-25 117.5 163 49.7
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 4.7e-24 115.2 160 49.4
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 8.0e-24 114.4 161 48.4
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 1.4e-23 113.6 156 50.0
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.8e-23 113.2 168 48.8
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 1.8e-23 113.2 167 61.1
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 2.3e-23 112.8 165 48.5
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 2.3e-23 112.8 166 47.6
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 2.3e-23 112.8 158 49.4
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 4.0e-23 112.1 162 53.1
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 6.8e-23 111.3 161 49.7
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 6.8e-23 111.3 181 48.6
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 1.2e-22 110.5 170 45.3
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.0e-22 109.8 161 47.8
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 5.7e-22 108.2 159 47.8
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 7.5e-22 107.8 157 48.4
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 3.7e-21 105.5 167 45.5
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 4.8e-21 105.1 160 50.6
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.3e-21 104.8 161 47.8
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 8.3e-21 104.4 159 44.7
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 8.3e-21 104.4 161 50.3
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 8.3e-21 104.4 184 49.5
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 3.1e-20 102.4 167 44.9
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 4.1e-20 102.1 164 47.0
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.1e-20 102.1 161 46.0
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 4.1e-20 102.1 151 45.7
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 9.1e-20 100.9 162 46.3
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 2.7e-19 99.4 146 47.3
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 1.0e-18 97.4 163 48.5
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.0e-18 97.4 151 45.7
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 3.8e-18 95.5 156 44.9
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 1.9e-17 93.2 134 47.8
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 2.5e-17 92.8 161 44.7
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.1e-16 89.7 149 47.0
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 2.1e-16 89.7 165 44.8
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 6.1e-16 88.2 176 41.5
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 6.1e-16 88.2 176 41.5
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 8.0e-16 87.8 157 43.3
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 1.4e-15 87.0 164 42.1
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 4.0e-15 85.5 167 43.1
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 5.2e-15 85.1 153 45.1
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 6.8e-15 84.7 149 44.3
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 8.9e-15 84.3 179 40.2
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 1.2e-14 84.0 166 44.0
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 1.2e-14 84.0 157 43.9
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 1.2e-14 84.0 167 43.7
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 2.0e-14 83.2 163 42.9
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 2.6e-14 82.8 171 42.1
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 5.7e-14 81.6 152 48.7
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 7.5e-14 81.3 162 42.6
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 9.8e-14 80.9 196 45.9
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 9.8e-14 80.9 93 57.0
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 1.3e-13 80.5 100 53.0
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.2e-13 79.7 134 44.8
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 2.2e-13 79.7 92 55.4
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 2.8e-13 79.3 90 56.7
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 3.7e-13 79.0 105 55.2
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 3.7e-13 79.0 154 43.5
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 3.7e-13 79.0 106 53.8
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 4.9e-13 78.6 88 58.0
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 4.9e-13 78.6 177 40.7
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 4.9e-13 78.6 93 57.0
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 6.3e-13 78.2 170 41.8
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 6.3e-13 78.2 101 50.5
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 8.3e-13 77.8 98 56.1
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.8e-12 76.6 166 41.0
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 1.8e-12 76.6 70 61.4
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 3.1e-12 75.9 95 53.7
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 4.1e-12 75.5 160 41.9
Dinv24076 Davidia involucrata HOM05D003436 ORTHO05D003674 5.4e-12 75.1 124 45.2
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 7.0e-12 74.7 95 53.7
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 9.2e-12 74.3 174 40.8
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.6e-11 73.6 97 53.6
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 1.6e-11 73.6 93 50.5
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.6e-11 73.6 96 49.0
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 1.6e-11 73.6 64 64.1
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 2.0e-11 73.2 171 49.1
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 2.0e-11 73.2 78 57.7
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.5e-11 72.4 93 49.5
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.5e-11 72.0 149 44.3
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 4.5e-11 72.0 167 41.3
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 4.5e-11 72.0 80 55.0
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 5.9e-11 71.6 83 54.2
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.0e-10 70.9 149 41.6
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.0e-10 70.9 159 40.9
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.7e-10 70.1 85 52.9
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.7e-10 70.1 92 51.1
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 2.9e-10 69.3 110 45.5
TPR.G27779 Trifolium pratense HOM05D003436 ORTHO05D003674 2.9e-10 69.3 134 43.3
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 5.0e-10 68.6 160 40.6
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 6.6e-10 68.2 101 45.5
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 8.6e-10 67.8 159 52.8
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 1.1e-09 67.4 163 39.9
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 1.1e-09 67.4 76 55.3
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 1.5e-09 67.0 102 51.0
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 1.5e-09 67.0 176 38.1
HanXRQChr02g0048381 Helianthus annuus HOM05D003436 ORTHO05D003674 1.5e-09 67.0 122 42.6
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 1.5e-09 67.0 96 47.9
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.5e-09 67.0 83 50.6
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.3e-09 65.9 168 38.1
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 3.3e-09 65.9 98 48.0
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 4.3e-09 65.5 92 47.8
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 4.3e-09 65.5 97 48.5
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 5.6e-09 65.1 94 52.1
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.6e-09 65.1 93 48.4
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 7.3e-09 64.7 86 46.5
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 1.6e-08 63.5 94 52.1
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.6e-08 63.5 80 52.5
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 1.6e-08 63.5 156 37.2
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 2.1e-08 63.2 98 46.9
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.6e-08 62.4 80 52.5
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 4.7e-08 62.0 94 43.6
THA.LOC104799298 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 6.1e-08 61.6 170 45.9
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.0e-07 60.8 60 63.3
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.0e-07 60.8 60 63.3
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 1.0e-07 60.8 146 36.3
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 1.8e-07 60.1 63 57.1
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.8e-07 60.1 68 52.9
TAR623G1118 Trochodendron aralioides HOM05D003436 ORTHO05D003674 3.0e-07 59.3 112 42.9
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 4.0e-07 58.9 78 48.7
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 4.0e-07 58.9 94 42.6
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 5.2e-07 58.5 55 61.8
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 8.9e-07 57.8 154 39.0
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.5e-06 57.0 80 45.0
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 1.5e-06 57.0 87 42.5
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.0e-06 56.6 58 62.1
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.0e-06 56.6 78 46.2
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 4.4e-06 55.5 73 42.5
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 7.5e-06 54.7 73 42.5
Phvul.007G259400 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 7.5e-06 54.7 74 48.6
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 7.5e-06 54.7 68 47.1
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 7.5e-06 54.7 68 47.1
Cfa020171 Carpinus fangiana HOM05D003436 ORTHO05D003674 9.8e-06 54.3 140 35.7
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 9.8e-06 54.3 68 50.0


User provided reference genes

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