Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 5.0e-175 617.8 351 100.0
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 3.1e-169 598.6 355 95.5
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.2e-167 592.4 352 96.3
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 3.0e-164 582.0 353 94.6
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 3.0e-164 582.0 353 94.6
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.2e-157 560.1 357 86.6
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 5.7e-155 551.2 356 85.7
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.7e-151 539.7 349 85.1
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 5.2e-148 528.1 354 87.6
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.0e-143 513.8 375 77.1
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 6.6e-143 511.1 342 87.7
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 3.3e-142 508.8 343 87.8
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.1e-141 506.1 346 86.7
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.1e-141 506.1 346 86.7
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.2e-136 490.3 389 74.6
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.7e-135 486.5 350 78.0
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.9e-135 485.7 367 74.7
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 4.1e-129 465.3 352 74.7
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.6e-120 436.8 353 72.2
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 1.5e-99 367.1 351 62.1
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 9.9e-99 364.4 355 62.5
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 6.4e-98 361.7 350 61.7
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 6.4e-98 361.7 350 61.7
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 6.4e-98 361.7 348 61.5
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.4e-97 359.8 350 61.4
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.6e-93 347.1 360 58.6
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.2e-89 332.8 350 57.7
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 9.3e-89 331.3 347 56.8
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 2.7e-88 329.7 335 58.2
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 4.6e-88 328.9 352 57.7
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.3e-87 327.4 349 58.7
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.3e-87 327.4 342 59.9
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.3e-87 326.6 350 55.4
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.9e-87 325.9 354 58.2
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 9.6e-86 321.2 352 57.1
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.1e-84 317.8 340 57.9
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.4e-84 316.6 353 55.8
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.2e-83 314.3 353 54.7
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.2e-83 314.3 333 60.4
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.5e-83 313.9 360 54.2
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 3.4e-83 312.8 351 55.3
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 3.4e-83 312.8 351 55.3
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 6.5e-82 308.5 336 56.8
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.1e-81 307.8 350 55.1
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 7.9e-80 301.6 349 54.4
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.3e-79 300.8 339 54.3
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.3e-79 300.1 356 54.8
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 3.0e-79 299.7 356 54.8
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.7e-79 298.1 356 54.8
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 2.5e-78 296.6 341 53.7
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 5.7e-78 295.4 354 54.2
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 5.7e-78 295.4 355 54.6
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 7.4e-78 295.0 349 52.4
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 9.6e-78 294.7 339 53.4
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 6.2e-77 292.0 356 53.7
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.2e-77 292.0 356 53.7
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.2e-77 292.0 363 53.2
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 8.2e-77 291.6 329 54.1
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 3.1e-76 289.7 324 56.5
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 4.1e-76 289.3 359 51.8
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 4.1e-76 289.3 349 53.6
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 2.0e-75 287.0 352 52.3
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 2.0e-75 287.0 352 52.3
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.6e-75 286.6 348 52.0
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.4e-75 286.2 357 51.5
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.4e-75 286.2 365 51.8
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.7e-74 283.9 334 54.2
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.9e-73 280.4 347 51.6
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 9.3e-73 278.1 348 51.4
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.6e-72 277.3 355 50.7
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 7.9e-72 275.0 349 50.7
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.8e-71 273.9 331 54.4
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.3e-71 273.5 355 50.1
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.3e-71 273.5 336 51.5
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.3e-71 273.5 357 51.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 5.7e-70 268.9 345 51.0
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 7.4e-70 268.5 352 49.7
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 9.7e-70 268.1 318 52.2
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.3e-69 267.7 356 50.6
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 3.7e-69 266.2 343 52.5
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 8.2e-69 265.0 334 50.9
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 5.3e-68 262.3 355 47.0
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 6.9e-68 261.9 348 48.6
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 9.0e-68 261.5 346 50.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.5e-67 260.8 340 51.2
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.4e-67 259.6 373 47.5
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 3.8e-66 256.1 362 48.6
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 5.0e-66 255.8 371 48.0
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.6e-64 249.2 310 52.6
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 7.9e-64 248.4 353 46.2
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.4e-63 247.7 350 48.6
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 3.3e-62 243.0 354 47.2
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 4.3e-62 242.7 338 45.9
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 9.7e-62 241.5 300 49.3
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.1e-60 238.0 339 49.0
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.4e-60 236.9 350 46.3
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.1e-60 236.5 360 46.4
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.6e-59 233.4 358 47.5
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 4.5e-59 232.6 340 49.7
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.0e-58 231.5 273 52.7
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 2.5e-57 226.9 343 46.1
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 3.2e-57 226.5 336 43.8
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 4.2e-57 226.1 370 43.8
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 9.4e-57 224.9 343 48.7
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 2.1e-56 223.8 345 47.8
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 6.7e-55 218.8 335 42.4
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 8.8e-55 218.4 338 42.6
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.5e-54 217.6 343 44.0
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.6e-54 216.9 345 44.6
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 2.6e-54 216.9 331 44.7
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.2e-51 208.0 336 43.2
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 5.9e-51 205.7 337 42.7
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 5.9e-51 205.7 337 42.7
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 7.2e-49 198.7 355 41.4
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 3.0e-47 193.4 336 40.2
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 5.2e-47 192.6 297 46.5
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 4.8e-45 186.0 358 40.8
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 8.2e-45 185.3 177 61.0
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.8e-44 184.1 350 42.3
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 4.2e-41 172.9 362 39.5
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 4.2e-41 172.9 342 40.1
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.2e-40 171.4 307 40.1
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 2.7e-40 170.2 349 40.7
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.2e-38 164.9 130 73.1
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 3.1e-36 156.8 226 49.6
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 5.9e-35 152.5 127 65.4
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 7.7e-35 152.1 320 35.9
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.8e-34 149.8 331 35.3
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 6.5e-34 149.1 272 43.0
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 5.5e-33 146.0 368 39.1
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 3.6e-32 143.3 313 38.7
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 2.4e-28 130.6 320 35.9
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 1.2e-27 128.3 222 42.8
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 9.5e-25 118.6 170 52.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 4.0e-23 113.2 424 30.0
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.5e-22 109.0 106 55.7
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.2e-19 101.7 101 57.4
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 5.9e-19 99.4 330 33.9
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.0e-18 98.6 195 41.5
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.5e-17 94.7 156 40.4
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.3e-17 93.2 140 49.3
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 4.4e-14 83.2 172 35.5
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 3.2e-12 77.0 140 42.9
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.0e-11 74.3 96 45.8
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 3.6e-08 63.5 413 26.4
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 1.2e-06 58.5 60 56.7
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 1.2e-06 58.5 135 33.3
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 1.5e-06 58.2 50 60.0
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.5e-06 58.2 87 43.7
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.0e-06 57.8 202 30.7


User provided reference genes

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