Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 3.4e-302 1041.2 649 100.0
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 9.8e-302 1039.6 649 99.8
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 2.3e-298 1028.5 649 99.2
BraA03t09587Z Brassica rapa HOM05D010812 ORTHO05D004682 7.1e-276 953.7 668 90.0
A03p02230 Brassica napus HOM05D010812 ORTHO05D004682 8.1e-272 940.3 703 86.8
BcaB01g05719 Brassica carinata HOM05D010812 ORTHO05D004682 1.6e-211 740.0 721 75.9
Thhalv10013098m.g Eutrema salsugineum HOM05D010812 ORTHO05D004682 7.2e-196 688.0 689 61.1
Sp6g37640 Schrenkiella parvula HOM05D010812 ORTHO05D004682 8.6e-181 637.9 698 58.5
BraA10t45145Z Brassica rapa HOM05D010812 ORTHO05D004682 1.4e-167 594.0 702 57.7
AT5G05190 Arabidopsis thaliana HOM05D010812 ORTHO05D004682 1.3e-165 587.4 732 53.3
C09p71510 Brassica napus HOM05D010812 ORTHO05D004682 1.7e-165 587.0 696 57.3
A10p31000 Brassica napus HOM05D010812 ORTHO05D004682 1.1e-164 584.3 693 57.3
BcaC06g32228 Brassica carinata HOM05D010812 ORTHO05D004682 4.9e-160 568.9 652 58.7
Carub.0006s0412 Capsella rubella HOM05D010812 ORTHO05D004682 7.1e-151 538.5 774 48.2
AL6G15030 Arabidopsis lyrata HOM05D010812 ORTHO05D004682 3.0e-149 533.1 730 50.5
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 2.4e-138 496.9 679 50.7
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 1.4e-82 311.6 363 55.9
THA.LOC104826873 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 1.8e-82 311.2 732 36.6
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 3.8e-80 303.5 708 36.9
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 6.7e-24 116.7 125 49.6
Gohir.A10G177500 Gossypium hirsutum HOM05D005345 ORTHO05D004682 8.7e-24 116.3 243 35.0
MD07G1235500 Malus domestica HOM05D005345 ORTHO05D004682 4.3e-23 114.0 125 48.8
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 4.3e-23 114.0 113 50.4
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 4.3e-23 114.0 116 51.7
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 5.6e-23 113.6 124 46.8
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 5.6e-23 113.6 113 50.4
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 1.3e-22 112.5 243 33.7
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 3.7e-22 110.9 114 50.9
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 4.8e-22 110.5 253 34.4
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 5.3e-21 107.1 225 33.8
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 5.3e-21 107.1 116 50.9
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 6.9e-21 106.7 326 32.5
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 6.9e-21 106.7 326 32.5
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 1.5e-20 105.5 109 47.7
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 1.7e-19 102.1 168 39.3
Prupe.2G265800 Prunus persica HOM05D005345 ORTHO05D004682 2.9e-19 101.3 154 41.6
Solyc03g095610.4 Solanum lycopersicum HOM05D005345 ORTHO05D004682 4.9e-19 100.5 118 45.8
Hund15794 Selenicereus undatus HOM05D005345 ORTHO05D004682 6.4e-19 100.1 202 34.7
PGSC0003DMG400022956 Solanum tuberosum HOM05D005345 ORTHO05D004682 6.4e-19 100.1 119 43.7
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 1.1e-18 99.4 126 42.1
Nitab4.5_0000171g0310 Nicotiana tabacum HOM05D005345 ORTHO05D004682 1.1e-18 99.4 107 47.7
Sopen03g025560 Solanum pennellii HOM05D005345 ORTHO05D004682 1.1e-18 99.4 119 43.7
Cc02_g05190 Coffea canephora HOM05D005345 ORTHO05D004682 1.9e-18 98.6 120 43.3
MELO3C020021.2 Cucumis melo HOM05D005345 ORTHO05D004682 1.9e-18 98.6 225 32.0
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 3.2e-18 97.8 109 46.8
FAN01G1672 Fragaria x ananassa HOM05D005345 ORTHO05D004682 4.2e-18 97.4 95 50.5
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 5.5e-18 97.1 223 33.6
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 7.1e-18 96.7 242 32.2
FvH4_7g26160 Fragaria vesca HOM05D005345 ORTHO05D004682 7.1e-18 96.7 93 48.4
FAN06G3940 Fragaria x ananassa HOM05D005345 ORTHO05D004682 7.1e-18 96.7 93 48.4
FAN10G1366 Fragaria x ananassa HOM05D005345 ORTHO05D004682 1.6e-17 95.5 93 48.4
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 2.1e-17 95.1 223 30.5
CAN.G1229.5 Capsicum annuum HOM05D005345 ORTHO05D004682 7.9e-17 93.2 140 41.4
Eucgr.G03149 Eucalyptus grandis HOM05D005345 ORTHO05D004682 1.3e-16 92.4 187 35.8
RcHm_v2.0_Chr1g0372591 Rosa chinensis HOM05D005345 ORTHO05D004682 1.3e-16 92.4 89 48.3
Peaxi162Scf00073g00227 Petunia axillaris HOM05D005345 ORTHO05D004682 2.3e-16 91.7 141 40.4
TWI53G1830 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 2.3e-16 91.7 121 41.3
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 3.0e-16 91.3 268 29.1
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 3.9e-16 90.9 152 38.8
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 3.9e-16 90.9 152 38.8
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 3.9e-16 90.9 134 41.8
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 3.9e-16 90.9 138 40.6
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 3.9e-16 90.9 99 47.5
Rhsim03G0153800 Rhododendron simsii HOM05D005345 ORTHO05D004682 3.9e-16 90.9 114 41.2
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 5.1e-16 90.5 110 43.6
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 1.1e-15 89.4 163 36.2
Thecc.10G185200 Theobroma cacao HOM05D005345 ORTHO05D004682 1.5e-15 89.0 451 26.6
TWI09G1031 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 1.5e-15 89.0 126 39.7
MSTRG.8382 Avicennia marina HOM05D005345 ORTHO05D004682 1.9e-15 88.6 68 61.8
MBI03_g40812_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 2.5e-15 88.2 78 53.8
EL10Ac5g10466 Beta vulgaris HOM05D005345 ORTHO05D004682 3.3e-15 87.8 275 28.7
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 5.6e-15 87.0 157 36.3
Ca_29505_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 5.6e-15 87.0 157 36.3
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 5.6e-15 87.0 133 39.1
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 7.4e-15 86.7 188 33.5
Lj8C52G7 Lonicera japonica HOM05D005345 ORTHO05D004682 9.6e-15 86.3 479 29.4
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 1.3e-14 85.9 186 34.4
Actinidia07784 Actinidia chinensis HOM05D005345 ORTHO05D004682 2.8e-14 84.7 195 33.3
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 2.8e-14 84.7 171 33.9
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 2.8e-14 84.7 192 31.8
Duzib106G0455 Durio zibethinus HOM05D005345 ORTHO05D004682 3.7e-14 84.3 716 26.4
Gohir.A13G007900 Gossypium hirsutum HOM05D005345 ORTHO05D004682 3.7e-14 84.3 668 25.0
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 3.7e-14 84.3 214 33.2
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 3.7e-14 84.3 113 42.5
TAR369G0882 Trochodendron aralioides HOM05D005345 ORTHO05D004682 3.7e-14 84.3 68 52.9
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 4.8e-14 84.0 174 35.1
Duzib128G0800 Durio zibethinus HOM05D005345 ORTHO05D004682 6.2e-14 83.6 734 23.0
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 6.2e-14 83.6 163 39.3
TPR.G13957 Trifolium pratense HOM05D005345 ORTHO05D004682 6.2e-14 83.6 130 39.2
DCAR_018044 Daucus carota HOM05D005345 ORTHO05D004682 8.2e-14 83.2 183 32.2
Aqoxy4G03281 Aquilegia oxysepala HOM05D005345 ORTHO05D004682 1.1e-13 82.8 224 29.0
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 1.1e-13 82.8 161 33.5
Gohir.D13G008100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.8e-13 82.0 668 24.7
Sc10g0003070 Simmondsia chinensis HOM05D005345 ORTHO05D004682 1.8e-13 82.0 509 26.9
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 3.1e-13 81.3 385 27.8
TAR636G0005 Trochodendron aralioides HOM05D005345 ORTHO05D004682 3.1e-13 81.3 152 36.2
Eucgr.J00102 Eucalyptus grandis HOM05D005345 ORTHO05D004682 5.3e-13 80.5 702 23.4
Gorai.013G008500 Gossypium raimondii HOM05D005345 ORTHO05D004682 5.3e-13 80.5 664 24.2
SGA_v2.0_scaffold44G16618 Striga asiatica HOM05D005345 ORTHO05D004682 1.2e-12 79.3 115 47.0
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 1.5e-12 79.0 344 28.8
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 1.5e-12 79.0 118 37.3
MSTRG.27252 Avicennia marina HOM05D005345 ORTHO05D004682 2.0e-12 78.6 169 34.9
Lj1g0012895 Lotus japonicus HOM05D005345 ORTHO05D004682 2.6e-12 78.2 243 31.3
Actinidia13637 Actinidia chinensis HOM05D005345 ORTHO05D004682 4.5e-12 77.4 117 35.9
PGR142G1797 Punica granatum HOM05D005345 ORTHO05D004682 4.5e-12 77.4 328 29.0
Gohir.A05G404400 Gossypium hirsutum HOM05D005345 ORTHO05D004682 7.6e-12 76.6 642 24.6
vmacro06904 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 7.6e-12 76.6 463 27.2
VMungo1309G1748 Vigna mungo HOM05D005345 ORTHO05D004682 7.6e-12 76.6 214 31.8
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 1.3e-11 75.9 155 30.3
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 1.7e-11 75.5 203 34.5
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 2.2e-11 75.1 677 29.8
CANSAT56G0683 Cannabis sativa HOM05D005345 ORTHO05D004682 4.9e-11 73.9 437 26.3
THA.LOC104814291 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 8.4e-11 73.2 246 29.7
Hund13436 Selenicereus undatus HOM05D005345 ORTHO05D004682 1.9e-10 72.0 280 27.5
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 2.5e-10 71.6 695 24.5
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 3.2e-10 71.2 425 28.0
HPP92_022866 Vanilla planifolia HOM05D005345 ORTHO05D004682 5.5e-10 70.5 129 36.4
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 9.3e-10 69.7 117 39.3
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 9.3e-10 69.7 146 36.3
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 1.6e-09 68.9 471 25.9
Gorai.012G013500 Gossypium raimondii HOM05D005345 ORTHO05D004682 1.6e-09 68.9 622 22.7
C06p23550 Brassica napus HOM05D010499 ORTHO05D013671 2.1e-09 68.6 235 29.4
Gohir.D10G184100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 2.1e-09 68.6 58 55.2
BcaC08g44783 Brassica carinata HOM05D010499 ORTHO05D013671 3.5e-09 67.8 235 29.4
BolC6t37526H Brassica oleracea HOM05D010499 ORTHO05D013671 3.5e-09 67.8 235 29.4
THA.LOC104824598 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 3.5e-09 67.8 181 30.9
TAR629G3516 Trochodendron aralioides HOM05D002045 ORTHO05D002014 3.5e-09 67.8 67 43.3
Zm00001eb111590 Zea mays HOM05D021806 ORTHO05D004682 4.6e-09 67.4 161 30.4
BcaB02g07653 Brassica carinata HOM05D010499 ORTHO05D013671 7.9e-09 66.6 244 29.1
Actinidia31637 Actinidia chinensis HOM05D005345 ORTHO05D004682 1.0e-08 66.2 79 41.8
COL.COLO4_06319 Corchorus olitorius HOM05D002045 ORTHO05D002014 1.0e-08 66.2 116 33.6
Gohir.D04G011300 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.3e-08 65.9 639 22.4
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 3.0e-08 64.7 529 24.8
Zm00001eb330730 Zea mays HOM05D021806 ORTHO05D004682 3.0e-08 64.7 150 30.0
AL5G37740 Arabidopsis lyrata HOM05D010499 ORTHO05D013671 3.9e-08 64.3 98 39.8
PSO017G7165 Papaver somniferum HOM05D005345 ORTHO05D004682 6.7e-08 63.5 207 30.9
ATR1127G123 Amborella trichopoda HOM05D002045 ORTHO05D002014 1.5e-07 62.4 117 31.6
Thhalv10005743m.g Eutrema salsugineum HOM05D010499 ORTHO05D013671 1.5e-07 62.4 320 28.4
Thecc.01G346100 Theobroma cacao HOM05D002045 ORTHO05D002014 1.5e-07 62.4 116 31.0
AUR62030590 Chenopodium quinoa HOM05D005345 ORTHO05D004682 2.5e-07 61.6 534 24.7
Dinv32561 Davidia involucrata HOM05D002045 ORTHO05D002014 2.5e-07 61.6 214 26.6
Migut.B01843 Erythranthe guttata HOM05D002045 ORTHO05D002014 2.5e-07 61.6 221 27.1
Os03g0334200 Oryza sativa ssp. japonica HOM05D021806 ORTHO05D004682 3.3e-07 61.2 147 29.9
Gohir.A11G095600 Gossypium hirsutum HOM05D002045 ORTHO05D002014 4.3e-07 60.8 117 33.3
Oeu007859.2 Olea europaea HOM05D002045 ORTHO05D002014 4.3e-07 60.8 119 30.3
MBI07_g24336_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 5.7e-07 60.5 64 45.3
PSO063G1517 Papaver somniferum HOM05D002045 ORTHO05D002014 5.7e-07 60.5 55 43.6
DCAR_020155 Daucus carota HOM05D005345 ORTHO05D004682 7.4e-07 60.1 744 22.0
Lsat_1_v5_gn_1_90561 Lactuca sativa HOM05D000041 ORTHO05D000452 7.4e-07 60.1 35 68.6
Lj8C52G6 Lonicera japonica HOM05D005345 ORTHO05D004682 7.4e-07 60.1 62 45.2
unitig_46.g18752 Utricularia gibba HOM05D005345 ORTHO05D004682 7.4e-07 60.1 58 44.8
Ah.11g042470 Amaranthus hybridus HOM05D005345 ORTHO05D004682 9.7e-07 59.7 601 24.1
A07p22920 Brassica napus HOM05D010499 ORTHO05D013671 9.7e-07 59.7 232 27.6
Gohir.D11G100500 Gossypium hirsutum HOM05D002045 ORTHO05D002014 9.7e-07 59.7 209 26.8
PSO017G5511 Papaver somniferum HOM05D002045 ORTHO05D002014 9.7e-07 59.7 55 41.8
unitig_37.g12476 Utricularia gibba HOM05D005345 ORTHO05D004682 9.7e-07 59.7 78 44.9
CSS0030482 Camellia sinensis var. sinensis HOM05D002045 ORTHO05D002014 1.3e-06 59.3 204 24.0
PSO384G3902 Papaver somniferum HOM05D002045 ORTHO05D002014 1.3e-06 59.3 56 48.2
Actinidia28495 Actinidia chinensis HOM05D002045 ORTHO05D002014 1.6e-06 58.9 53 52.8
ATR1100G028 Amborella trichopoda HOM05D002045 ORTHO05D002014 1.6e-06 58.9 39 64.1
HPP92_003987 Vanilla planifolia HOM05D002045 ORTHO05D002014 1.6e-06 58.9 57 49.1
Os07g0680600 Oryza sativa ssp. japonica HOM05D021806 ORTHO05D004682 2.1e-06 58.5 161 26.7
Ciclev10018757m.g Citrus clementina HOM05D002045 ORTHO05D002014 2.8e-06 58.2 52 50.0
HPP92_014261 Vanilla planifolia HOM05D025459 ORTHO05D004682 2.8e-06 58.2 35 71.4
DCAR_009470 Daucus carota HOM05D005345 ORTHO05D004682 3.7e-06 57.8 754 22.1
Gorai.007G106800 Gossypium raimondii HOM05D002045 ORTHO05D002014 3.7e-06 57.8 209 26.8
BraA07t29958Z Brassica rapa HOM05D010499 ORTHO05D013671 4.8e-06 57.4 232 27.2
CDE10G0332 Ceratophyllum demersum HOM05D002045 ORTHO05D002014 4.8e-06 57.4 42 54.8
Dinv38855 Davidia involucrata HOM05D002045 ORTHO05D002014 4.8e-06 57.4 106 32.1
Medtr7g117150 Medicago truncatula HOM05D002045 ORTHO05D002014 4.8e-06 57.4 200 27.5
Aa31LG10G11300 Aethionema arabicum HOM05D010499 ORTHO05D013671 6.3e-06 57.0 180 28.9
Haze_08656 Corylus avellana HOM05D002045 ORTHO05D002014 6.3e-06 57.0 145 25.5
MD01G1169900 Malus domestica HOM05D005345 ORTHO05D004682 6.3e-06 57.0 62 45.2
Sabra03G0099100 Salix brachista HOM05D002045 ORTHO05D002014 6.3e-06 57.0 40 60.0
Sp5g06040 Schrenkiella parvula HOM05D010499 ORTHO05D013671 6.3e-06 57.0 197 26.4
Duzib114G0792 Durio zibethinus HOM05D005345 ORTHO05D004682 8.2e-06 56.6 58 48.3
MD07G1146100 Malus domestica HOM05D002045 ORTHO05D002014 8.2e-06 56.6 54 48.1


User provided reference genes

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