Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05900 Brassica carinata HOM05D005700 ORTHO05D007035 1.9e-53 212.2 105 100.0
BraA03t09544Z Brassica rapa HOM05D005700 ORTHO05D007035 2.5e-42 175.3 107 86.9
A03p01690 Brassica napus HOM05D005700 ORTHO05D007035 3.3e-42 174.9 103 88.3
BcaB01g05899 Brassica carinata HOM05D005700 ORTHO05D007035 3.3e-26 121.7 65 96.9
C03p02060 Brassica napus HOM05D005700 ORTHO05D007035 3.3e-26 121.7 65 96.9
BolC3t12759H Brassica oleracea HOM05D005700 ORTHO05D007035 3.3e-26 121.7 65 96.9
AT5G04440 Arabidopsis thaliana HOM05D005700 ORTHO05D007035 2.8e-25 118.6 65 92.3
C09p72310 Brassica napus HOM05D005700 ORTHO05D007035 3.7e-25 118.2 65 92.3
BolC9t59975H Brassica oleracea HOM05D005700 ORTHO05D007035 3.7e-25 118.2 65 92.3
Thhalv10014494m.g Eutrema salsugineum HOM05D005700 ORTHO05D007035 3.7e-25 118.2 65 92.3
AL6G14080 Arabidopsis lyrata HOM05D005700 ORTHO05D007035 6.3e-25 117.5 65 90.8
A10p31640 Brassica napus HOM05D005700 ORTHO05D007035 1.8e-24 115.9 65 90.8
BraA10t45210Z Brassica rapa HOM05D005700 ORTHO05D007035 1.8e-24 115.9 65 90.8
BcaC06g32152 Brassica carinata HOM05D005700 ORTHO05D007035 3.1e-24 115.2 65 90.8
Carub.0006s0338 Capsella rubella HOM05D005700 ORTHO05D007035 4.1e-24 114.8 65 87.7
Sp6g38300 Schrenkiella parvula HOM05D005700 ORTHO05D007035 7.0e-24 114.0 65 87.7
Aa31LG11G5310 Aethionema arabicum HOM05D005700 ORTHO05D007035 2.7e-23 112.1 65 86.2
THA.LOC104823196 Tarenaya hassleriana HOM05D005700 ORTHO05D007035 3.6e-20 101.7 65 80.0
TAR369G0971 Trochodendron aralioides HOM05D005700 ORTHO05D007035 3.4e-18 95.1 67 70.1
Ciclev10032582m.g Citrus clementina HOM05D005700 ORTHO05D007035 5.7e-18 94.4 65 70.8
CiPaw.01G265100 Carya illinoinensis HOM05D005700 ORTHO05D007035 7.5e-18 94.0 65 73.8
Duzib106G0901 Durio zibethinus HOM05D005700 ORTHO05D007035 7.5e-18 94.0 67 68.7
Thecc.10G089800 Theobroma cacao HOM05D005700 ORTHO05D007035 7.5e-18 94.0 65 70.8
TWI38G0818 Tripterygium wilfordii HOM05D005700 ORTHO05D007035 1.3e-17 93.2 65 69.2
Gohir.D04G021400 Gossypium hirsutum HOM05D005700 ORTHO05D007035 1.7e-17 92.8 65 70.8
Hma1.2p1_0454F.1_g156230 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 2.8e-17 92.0 65 67.7
Hma1.2p1_0454F.1_g156240 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 2.8e-17 92.0 65 67.7
Sopen05g033880 Solanum pennellii HOM05D005700 ORTHO05D007035 3.7e-17 91.7 65 70.8
PGSC0003DMG400023376 Solanum tuberosum HOM05D005700 ORTHO05D007035 3.7e-17 91.7 65 70.8
Gohir.A05G393500 Gossypium hirsutum HOM05D005700 ORTHO05D007035 4.8e-17 91.3 65 69.2
CSS0024490 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 6.3e-17 90.9 65 70.8
CAN.G1891.6 Capsicum annuum HOM05D005700 ORTHO05D007035 6.3e-17 90.9 65 69.2
Gorai.012G025500 Gossypium raimondii HOM05D005700 ORTHO05D007035 6.3e-17 90.9 65 69.2
Migut.F01676 Erythranthe guttata HOM05D005700 ORTHO05D007035 8.3e-17 90.5 65 67.7
Atru.chr12.910 Acer truncatum HOM05D005700 ORTHO05D007035 1.1e-16 90.1 65 70.8
Cfa001774 Carpinus fangiana HOM05D005700 ORTHO05D007035 1.1e-16 90.1 65 66.2
ECA238G2005 Erigeron canadensis HOM05D005700 ORTHO05D007035 1.1e-16 90.1 65 64.6
Lj2A24T67 Lonicera japonica HOM05D005700 ORTHO05D007035 1.1e-16 90.1 66 69.7
Dinv31263 Davidia involucrata HOM05D005700 ORTHO05D007035 1.4e-16 89.7 66 69.7
Nitab4.5_0000096g0200 Nicotiana tabacum HOM05D005700 ORTHO05D007035 1.4e-16 89.7 65 69.2
Oeu046658.1 Olea europaea HOM05D005700 ORTHO05D007035 1.4e-16 89.7 65 66.2
Manes.11G085375 Manihot esculenta HOM05D005700 ORTHO05D007035 2.4e-16 89.0 65 69.2
Peaxi162Scf01201g00017 Petunia axillaris HOM05D005700 ORTHO05D007035 2.4e-16 89.0 65 67.7
SGA_v2.0_scaffold41G15744 Striga asiatica HOM05D005700 ORTHO05D007035 2.4e-16 89.0 65 66.2
Haze_16777 Corylus avellana HOM05D005700 ORTHO05D007035 3.1e-16 88.6 65 66.2
Cpa.g.sc53.169 Carica papaya HOM05D005700 ORTHO05D007035 4.1e-16 88.2 62 71.0
FAN10G0584 Fragaria x ananassa HOM05D005700 ORTHO05D007035 4.1e-16 88.2 75 60.0
HanXRQChr14g0456161 Helianthus annuus HOM05D005700 ORTHO05D007035 7.0e-16 87.4 66 65.2
Hund06763 Selenicereus undatus HOM05D005700 ORTHO05D007035 7.0e-16 87.4 65 66.2
arahy.Tifrunner.gnm1.ann1.PLH1MA Arachis hypogaea HOM05D005700 ORTHO05D007035 9.1e-16 87.0 72 59.7
CSS0044057 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 1.2e-15 86.7 76 59.2
FAN03G2335 Fragaria x ananassa HOM05D005700 ORTHO05D007035 1.2e-15 86.7 65 63.1
Nn3g19086 Nelumbo nucifera HOM05D005700 ORTHO05D007035 1.2e-15 86.7 65 63.1
GSVIVG01016163001 Vitis vinifera HOM05D005700 ORTHO05D007035 1.2e-15 86.7 65 64.6
Lalb_Chr01g0010291 Lupinus albus HOM05D005700 ORTHO05D007035 1.6e-15 86.3 65 64.6
arahy.Tifrunner.gnm1.ann1.U7ZK73 Arachis hypogaea HOM05D005700 ORTHO05D007035 2.0e-15 85.9 65 64.6
COL.COLO4_32883 Corchorus olitorius HOM05D005700 ORTHO05D007035 2.0e-15 85.9 65 69.2
Solyc05g055430.4 Solanum lycopersicum HOM05D005700 ORTHO05D007035 2.0e-15 85.9 65 66.2
FvH4_7g06650 Fragaria vesca HOM05D005700 ORTHO05D007035 2.7e-15 85.5 65 63.1
PGR142G0169 Punica granatum HOM05D005700 ORTHO05D007035 2.7e-15 85.5 65 66.2
QL08p053081 Quercus lobata HOM05D005700 ORTHO05D007035 2.7e-15 85.5 65 64.6
CiPaw.02G170000 Carya illinoinensis HOM05D005700 ORTHO05D007035 3.5e-15 85.1 65 66.2
HanXRQChr11g0335951 Helianthus annuus HOM05D005700 ORTHO05D007035 3.5e-15 85.1 65 61.5
PSO063G2079 Papaver somniferum HOM05D005700 ORTHO05D007035 3.5e-15 85.1 65 64.6
PSO339G4237 Papaver somniferum HOM05D005700 ORTHO05D007035 3.5e-15 85.1 65 64.6
Prupe.2G094500 Prunus persica HOM05D005700 ORTHO05D007035 3.5e-15 85.1 65 63.1
Actinidia38892 Actinidia chinensis HOM05D005700 ORTHO05D007035 4.5e-15 84.7 65 64.6
ClCG08G007920 Citrullus lanatus HOM05D005700 ORTHO05D007035 4.5e-15 84.7 65 64.6
Lsat_1_v5_gn_2_103220 Lactuca sativa HOM05D005700 ORTHO05D007035 5.9e-15 84.3 66 60.6
Potri.010G230900 Populus trichocarpa HOM05D005700 ORTHO05D007035 5.9e-15 84.3 65 64.6
Lj1g0010858 Lotus japonicus HOM05D005700 ORTHO05D007035 7.7e-15 84.0 65 63.1
Lj1g0018185 Lotus japonicus HOM05D005700 ORTHO05D007035 7.7e-15 84.0 65 63.1
RcHm_v2.0_Chr1g0336111 Rosa chinensis HOM05D005700 ORTHO05D007035 7.7e-15 84.0 65 61.5
MELO3C019851.2 Cucumis melo HOM05D005700 ORTHO05D007035 1.0e-14 83.6 65 64.6
VMungo0720G2730 Vigna mungo HOM05D005700 ORTHO05D007035 1.0e-14 83.6 65 63.1
Medtr1g050530 Medicago truncatula HOM05D005700 ORTHO05D007035 1.3e-14 83.2 65 60.0
Potri.008G030300 Populus trichocarpa HOM05D005700 ORTHO05D007035 1.3e-14 83.2 65 61.5
Sc20g0001510 Simmondsia chinensis HOM05D005700 ORTHO05D007035 1.3e-14 83.2 65 61.5
Psat6g095240 Pisum sativum HOM05D005700 ORTHO05D007035 1.7e-14 82.8 65 61.5
Glyma.10G102440 Glycine max HOM05D005700 ORTHO05D007035 2.2e-14 82.4 65 61.5
Glyma.U031112 Glycine max HOM05D005700 ORTHO05D007035 2.2e-14 82.4 65 61.5
Rhsim09G0145300 Rhododendron simsii HOM05D005700 ORTHO05D007035 3.8e-14 81.6 65 61.5
Sabra10G0179000 Salix brachista HOM05D005700 ORTHO05D007035 3.8e-14 81.6 65 63.1
SalBow6G6710 Salvia bowleyana HOM05D005700 ORTHO05D007035 3.8e-14 81.6 65 60.0
Sed0005120 Sechium edule HOM05D005700 ORTHO05D007035 3.8e-14 81.6 65 61.5
Sed0026830 Sechium edule HOM05D005700 ORTHO05D007035 3.8e-14 81.6 65 63.1
CSS0017585 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 5.0e-14 81.3 65 64.6
Actinidia34788 Actinidia chinensis HOM05D005700 ORTHO05D007035 6.5e-14 80.9 65 61.5
AUR62022764 Chenopodium quinoa HOM05D005700 ORTHO05D007035 8.5e-14 80.5 65 61.5
Phvul.007G244000 Phaseolus vulgaris HOM05D005700 ORTHO05D007035 8.5e-14 80.5 65 60.0
Ca_26010_v3 Cicer arietinum L. HOM05D005700 ORTHO05D007035 1.1e-13 80.1 65 58.5
Nn6g35199 Nelumbo nucifera HOM05D005700 ORTHO05D007035 1.5e-13 79.7 65 56.9
CSS0044078 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 1.9e-13 79.3 67 62.7
MD07G1074500 Malus domestica HOM05D005700 ORTHO05D007035 1.9e-13 79.3 65 61.5
MBI19_g03561_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 2.5e-13 79.0 65 56.9
MSTRG.400 Avicennia marina HOM05D005700 ORTHO05D007035 4.2e-13 78.2 65 58.5
EL10Ac4g08634 Beta vulgaris HOM05D005700 ORTHO05D007035 4.2e-13 78.2 65 61.5
vmacro10263 Vaccinium macrocarpon HOM05D005700 ORTHO05D007035 4.2e-13 78.2 65 60.0
HPP92_004967 Vanilla planifolia HOM05D005700 ORTHO05D007035 4.2e-13 78.2 62 61.3
CANSAT56G1373 Cannabis sativa HOM05D005700 ORTHO05D007035 5.5e-13 77.8 66 65.2
AUR62029215 Chenopodium quinoa HOM05D005700 ORTHO05D007035 5.5e-13 77.8 65 60.0
Aqoxy1G01068 Aquilegia oxysepala HOM05D005700 ORTHO05D007035 7.2e-13 77.4 65 61.5
MBI11_g23276_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 9.5e-13 77.0 71 53.5
CDE09G1384 Ceratophyllum demersum HOM05D005700 ORTHO05D007035 1.2e-12 76.6 65 56.9
unitig_749.g13568 Utricularia gibba HOM05D005700 ORTHO05D007035 2.1e-12 75.9 62 62.9
Zm00001eb003780 Zea mays HOM05D005700 ORTHO05D007035 2.1e-12 75.9 65 56.9
Cc02_g10560 Coffea canephora HOM05D005700 ORTHO05D007035 3.6e-12 75.1 65 55.4
SMO196G0037 Selaginella moellendorffii HOM05D005700 ORTHO05D007035 1.0e-11 73.6 65 58.5
SEGI_13772 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 2.3e-11 72.4 65 56.9
ATR0043G051 Amborella trichopoda HOM05D005700 ORTHO05D007035 8.8e-11 70.5 65 50.8
AagrBONN_evm.TU.Sc2ySwM_228.955 Anthoceros agrestis HOM05D005700 ORTHO05D007035 4.4e-10 68.2 62 51.6
MBI11_g29032_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 3.7e-09 65.1 52 59.6
Mapoly0083s0065 Marchantia polymorpha HOM05D005700 ORTHO05D007035 8.3e-09 63.9 65 46.2
CBR_g10878 Chara braunii HOM05D005700 ORTHO05D007035 1.1e-08 63.5 65 46.2
BcaNung07228 Brassica carinata HOM05D005700 ORTHO05D007035 2.4e-08 62.4 38 81.6
Pp3c1_19240 Physcomitrium patens HOM05D005700 ORTHO05D007035 3.5e-07 58.5 65 41.5
ECA233G6102 Erigeron canadensis HOM05D005700 ORTHO05D007035 3.8e-06 55.1 40 60.0
PRCOL_00003535 Prasinoderma coloniale HOM05D005700 ORTHO05D007035 6.6e-06 54.3 66 47.0


User provided reference genes

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