Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05843 Brassica carinata HOM05D000003 ORTHO05D000006 5.2e-53 210.7 99 100.0
BcaC08g45939 Brassica carinata HOM05D000003 ORTHO05D021943 2.7e-25 118.6 97 55.7
BcaB07g32650 Brassica carinata HOM05D000003 ORTHO05D000006 4.4e-20 101.3 97 51.5
BcaC06g33259 Brassica carinata HOM05D028122 ORTHO05D032871 9.8e-20 100.1 97 51.5
BcaC02g12080 Brassica carinata HOM05D000003 ORTHO05D000006 3.5e-17 91.7 97 45.4
BcaB06g27916 Brassica carinata HOM05D000848 ORTHO05D003342 7.3e-15 84.0 96 43.8
Aa31LG8G10190 Aethionema arabicum HOM05D000003 ORTHO05D000006 1.2e-14 83.2 77 51.9
BcaC01g04543 Brassica carinata HOM05D000848 ORTHO05D003342 1.6e-14 82.8 96 39.6
BcaC07g39546 Brassica carinata HOM05D000848 ORTHO05D003342 2.1e-14 82.4 89 42.7
AL3G40240 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 2.8e-14 82.0 96 38.5
Aa31LG4G9750 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.1e-14 80.5 89 43.8
BcaB07g30860 Brassica carinata HOM05D000003 ORTHO05D000007 2.3e-13 79.0 98 36.7
THA.LOC104820714 Tarenaya hassleriana HOM05D000003 ORTHO05D000006 6.8e-13 77.4 96 40.6
THA.LOC104822217 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 6.8e-13 77.4 96 40.6
THA.LOC104814698 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 2.0e-12 75.9 96 37.5
BraA06t25612Z Brassica rapa HOM05D000003 ORTHO05D028000 3.4e-12 75.1 77 39.0
Aa31LG4G12530 Aethionema arabicum HOM05D000003 ORTHO05D000006 4.4e-12 74.7 96 43.8
BcaC06g36724 Brassica carinata HOM05D000003 ORTHO05D000006 4.4e-12 74.7 77 42.9
THA.LOC104820715 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 5.8e-12 74.3 110 32.7
Aa31LG8G10730 Aethionema arabicum HOM05D000003 ORTHO05D000006 7.5e-12 73.9 66 45.5
AL2G10360 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 9.9e-12 73.6 94 36.2
BcaC07g38652 Brassica carinata HOM05D000848 ORTHO05D003342 1.7e-11 72.8 69 43.5
Aa31LG1G2320 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.9e-11 72.0 96 37.5
BcaB03g14792 Brassica carinata HOM05D000003 ORTHO05D000007 2.9e-11 72.0 98 34.7
BcaC06g34146 Brassica carinata HOM05D000003 ORTHO05D000283 2.9e-11 72.0 99 37.4
THA.LOC104800051 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 2.9e-11 72.0 97 42.3
BcaC01g02774 Brassica carinata HOM05D000003 ORTHO05D000283 6.4e-11 70.9 89 38.2
Carub.0008s0629 Capsella rubella HOM05D000003 ORTHO05D000004 8.3e-11 70.5 89 38.2
BcaC06g35997 Brassica carinata HOM05D000003 ORTHO05D003342 1.4e-10 69.7 68 42.6
BcaB06g25353 Brassica carinata HOM05D000003 ORTHO05D000283 4.1e-10 68.2 99 34.3
THA.LOC104817082 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 7.1e-10 67.4 63 50.8
BcaB01g03209 Brassica carinata HOM05D000003 ORTHO05D000006 1.2e-09 66.6 100 36.0
BcaC07g37541 Brassica carinata HOM05D000003 ORTHO05D000006 1.2e-09 66.6 98 29.6
THA.LOC104806035 Tarenaya hassleriana HOM05D000003 ORTHO05D000006 1.6e-09 66.2 100 38.0
THA.LOC104825266 Tarenaya hassleriana HOM05D000003 ORTHO05D000006 1.6e-09 66.2 96 34.4
AT1G40390 Arabidopsis thaliana HOM05D000003 ORTHO05D000006 2.1e-09 65.9 72 41.7
Aa31LG10G11440 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.5e-09 65.1 97 34.0
BcaB01g00271 Brassica carinata HOM05D000003 ORTHO05D003342 3.5e-09 65.1 97 38.1
BcaB08g36128 Brassica carinata HOM05D000003 ORTHO05D000007 3.5e-09 65.1 89 33.7
BcaB01g02113 Brassica carinata HOM05D000003 ORTHO05D000283 4.6e-09 64.7 99 33.3
BcaB05g24536 Brassica carinata HOM05D000003 ORTHO05D000283 4.6e-09 64.7 90 35.6
BcaC08g43142 Brassica carinata HOM05D000003 ORTHO05D000283 4.6e-09 64.7 99 31.3
Carub.0002s0096 Capsella rubella HOM05D000003 ORTHO05D000007 4.6e-09 64.7 70 44.3
THA.LOC104798680 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 4.6e-09 64.7 60 51.7
AL7G34100 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 7.8e-09 63.9 82 35.4
BcaC02g12237 Brassica carinata HOM05D000003 ORTHO05D000007 7.8e-09 63.9 72 37.5
BcaC09g49882 Brassica carinata HOM05D000003 ORTHO05D000283 7.8e-09 63.9 98 28.6
BcaB02g11235 Brassica carinata HOM05D000003 ORTHO05D000007 1.0e-08 63.5 98 34.7
THA.LOC104807056 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.0e-08 63.5 90 41.1
BcaC07g39338 Brassica carinata HOM05D000003 ORTHO05D000007 1.3e-08 63.2 99 36.4
C08p23550 Brassica napus HOM05D000003 ORTHO05D000007 1.3e-08 63.2 99 36.4
BcaC07g38923 Brassica carinata HOM05D000003 ORTHO05D000006 1.7e-08 62.8 62 45.2
Aa31LG4G16940 Aethionema arabicum HOM05D000003 ORTHO05D000006 2.3e-08 62.4 96 36.5
Aa31LG1G8410 Aethionema arabicum HOM05D000003 ORTHO05D000006 3.9e-08 61.6 66 39.4
BolC3t15296H Brassica oleracea HOM05D000003 ORTHO05D000006 5.1e-08 61.2 98 33.7
THA.LOC104807150 Tarenaya hassleriana HOM05D000583 ORTHO05D000004 8.6e-08 60.5 59 47.5
Aa31LG1G7070 Aethionema arabicum HOM05D000003 ORTHO05D000006 1.1e-07 60.1 70 38.6
Aa31LG5G19150 Aethionema arabicum HOM05D000003 ORTHO05D000006 1.1e-07 60.1 80 33.8
BcaC07g37192 Brassica carinata HOM05D000003 ORTHO05D000006 1.5e-07 59.7 67 38.8
Aa31sc2092G10 Aethionema arabicum HOM05D000003 ORTHO05D000006 2.5e-07 58.9 66 37.9
BcaC07g39464 Brassica carinata HOM05D000003 ORTHO05D000006 3.3e-07 58.5 63 41.3
BcaC05g26008 Brassica carinata HOM05D000003 ORTHO05D000007 4.3e-07 58.2 89 31.5
THA.LOC104815137 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 4.3e-07 58.2 63 38.1
BolC9t57256H Brassica oleracea HOM05D000003 ORTHO05D000006 5.6e-07 57.8 69 39.1
BraA02t06903Z Brassica rapa HOM05D000003 ORTHO05D023841 1.2e-06 56.6 63 41.3
BcaC08g45218 Brassica carinata HOM05D000003 ORTHO05D000007 1.6e-06 56.2 94 30.9
THA.LOC104801567 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.6e-06 56.2 59 42.4
BolC5t30630H Brassica oleracea HOM05D000003 ORTHO05D000006 2.1e-06 55.8 98 32.7
Aa31LG9G2500 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-06 55.1 66 33.3
Aa31sc224G10 Aethionema arabicum HOM05D000003 ORTHO05D000006 3.6e-06 55.1 95 32.6
BcaC08g46768 Brassica carinata HOM05D000003 ORTHO05D023841 4.7e-06 54.7 63 36.5
BraA05t20679Z Brassica rapa HOM05D000003 ORTHO05D000007 4.7e-06 54.7 100 25.0
BolC3t20090H Brassica oleracea HOM05D000003 ORTHO05D021943 6.2e-06 54.3 28 85.7
BolC2t09305H Brassica oleracea HOM05D000003 ORTHO05D000006 8.1e-06 53.9 51 49.0
FvH4_5g14731 Fragaria vesca HOM05D000003 ORTHO05D000006 8.1e-06 53.9 96 30.2


User provided reference genes

Program Settings