Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05814 Brassica carinata HOM05D007539 ORTHO05D009315 3.9e-108 394.8 199 100.0
C03p01600 Brassica napus HOM05D007539 ORTHO05D009315 1.3e-95 353.2 206 87.4
BcaB01g05802 Brassica carinata HOM05D007539 ORTHO05D009315 1.9e-91 339.3 194 87.6
BolC3t12712H Brassica oleracea HOM05D007539 ORTHO05D009315 1.8e-89 332.8 270 67.8
A03p01240 Brassica napus HOM05D007539 ORTHO05D009315 4.3e-83 311.6 193 82.4
CARHR209760 Cardamine hirsuta HOM05D007539 ORTHO05D009315 2.9e-79 298.9 166 86.7
Thhalv10014552m.g Eutrema salsugineum HOM05D007539 ORTHO05D009315 1.9e-78 296.2 197 77.2
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 5.7e-75 284.6 276 59.4
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 2.0e-59 233.0 187 64.7
Lj5g0010413 Lotus japonicus HOM05D007539 ORTHO05D009315 4.4e-59 231.9 147 76.2
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 9.7e-59 230.7 176 67.0
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 2.8e-58 229.2 143 77.6
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 8.2e-58 227.6 143 76.9
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 1.1e-57 227.3 162 71.0
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 1.8e-57 226.5 141 78.0
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 2.4e-57 226.1 145 75.9
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 6.9e-57 224.6 140 77.9
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 1.5e-56 223.4 143 76.2
Glyma.13G148000 Glycine max HOM05D007539 ORTHO05D009315 2.0e-56 223.0 143 75.5
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 3.4e-56 222.2 146 75.3
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 3.4e-56 222.2 146 75.3
Glyma.10G063500 Glycine max HOM05D007539 ORTHO05D009315 3.4e-56 222.2 140 76.4
Phvul.007G226000 Phaseolus vulgaris HOM05D007539 ORTHO05D009315 3.4e-56 222.2 140 77.9
VMungo0720G2140 Vigna mungo HOM05D007539 ORTHO05D009315 1.3e-55 220.3 170 67.6
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 1.7e-55 219.9 177 65.5
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 1.7e-55 219.9 197 58.9
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 2.2e-55 219.5 158 67.1
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 2.2e-55 219.5 143 72.7
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 2.9e-55 219.2 145 74.5
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 3.8e-55 218.8 142 75.4
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 5.0e-55 218.4 145 72.4
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 5.0e-55 218.4 145 71.0
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 6.5e-55 218.0 156 68.6
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 1.1e-54 217.2 155 67.7
Potri.016G096900 Populus trichocarpa HOM05D007539 ORTHO05D009315 1.4e-54 216.9 192 59.4
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 1.9e-54 216.5 124 84.7
Medtr1g062250 Medicago truncatula HOM05D007539 ORTHO05D009315 1.9e-54 216.5 179 64.8
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 1.9e-54 216.5 144 72.2
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 2.5e-54 216.1 155 67.1
PGR142G1614 Punica granatum HOM05D007539 ORTHO05D009315 2.5e-54 216.1 199 58.8
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 3.2e-54 215.7 194 60.8
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 3.2e-54 215.7 187 59.9
Gohir.D04G106800 Gossypium hirsutum HOM05D007539 ORTHO05D009315 4.2e-54 215.3 142 75.4
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 7.2e-54 214.5 165 64.8
Prupe.7G122900 Prunus persica HOM05D007539 ORTHO05D009315 7.2e-54 214.5 142 73.2
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 7.2e-54 214.5 194 60.8
Ah.08g211220 Amaranthus hybridus HOM05D007539 ORTHO05D009315 9.4e-54 214.2 164 65.9
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 9.4e-54 214.2 165 64.2
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 1.2e-53 213.8 139 74.1
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 1.2e-53 213.8 154 66.9
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 1.6e-53 213.4 203 59.6
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 2.7e-53 212.6 197 58.4
Os08g0560600 Oryza sativa ssp. japonica HOM05D007539 ORTHO05D009315 3.6e-53 212.2 188 59.6
Sabra16G0100100 Salix brachista HOM05D007539 ORTHO05D009315 3.6e-53 212.2 192 59.4
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 6.1e-53 211.5 162 65.4
MBI11_g41953_MAGBIO Magnolia biondii HOM05D007539 ORTHO05D009315 6.1e-53 211.5 163 65.0
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 6.1e-53 211.5 165 64.8
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 6.1e-53 211.5 199 56.8
CAN.G729.5 Capsicum annuum HOM05D007539 ORTHO05D009315 1.0e-52 210.7 136 75.7
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 1.0e-52 210.7 145 70.3
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 1.0e-52 210.7 182 56.6
Aqoxy2G01556 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 3.9e-52 208.8 136 74.3
EL10Ac7g16719 Beta vulgaris HOM05D007539 ORTHO05D009315 3.9e-52 208.8 148 66.9
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 3.9e-52 208.8 194 61.3
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 5.2e-52 208.4 155 64.5
SalBow5G4705 Salvia bowleyana HOM05D007539 ORTHO05D009315 8.8e-52 207.6 141 70.2
HPP92_014788 Vanilla planifolia HOM05D007539 ORTHO05D009315 1.5e-51 206.8 139 69.8
AUR62042699 Chenopodium quinoa HOM05D007539 ORTHO05D009315 2.0e-51 206.5 192 59.4
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 2.6e-51 206.1 197 58.9
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 3.3e-51 205.7 140 70.0
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 4.4e-51 205.3 147 69.4
Zm00001eb175880 Zea mays HOM05D007539 ORTHO05D009315 9.7e-51 204.1 135 69.6
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 1.7e-50 203.4 145 66.9
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.2e-50 203.0 147 68.7
Sed0004549 Sechium edule HOM05D007539 ORTHO05D009315 2.8e-50 202.6 190 56.8
unitig_8.g4721 Utricularia gibba HOM05D007539 ORTHO05D009315 2.8e-50 202.6 157 64.3
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.7e-50 202.2 147 68.7
GSVIVG01033714001 Vitis vinifera HOM05D007539 ORTHO05D009315 2.4e-49 199.5 147 64.6
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 4.1e-49 198.7 145 66.2
CDE02G3922 Ceratophyllum demersum HOM05D007539 ORTHO05D009315 4.1e-49 198.7 158 61.4
ECA238G4618 Erigeron canadensis HOM05D007539 ORTHO05D009315 2.0e-48 196.4 136 69.9
FAN05G5748 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.0e-48 196.4 139 69.8
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 4.5e-48 195.3 154 68.2
ATR0950G005 Amborella trichopoda HOM05D007539 ORTHO05D009315 5.9e-48 194.9 180 57.2
FAN02G2576 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.8e-47 192.2 147 66.0
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 1.8e-44 183.3 192 54.7
Nitab4.5_0000725g0080 Nicotiana tabacum HOM05D007539 ORTHO05D009315 4.0e-44 182.2 198 55.1
Carub.0006s0239 Capsella rubella HOM05D007539 ORTHO05D009315 1.5e-43 180.3 94 88.3
AL6G13050 Arabidopsis lyrata HOM05D007539 ORTHO05D009315 2.6e-43 179.5 94 89.4
Lalb_Chr02g0155351 Lupinus albus HOM05D007539 ORTHO05D009315 4.4e-43 178.7 118 73.7
Ah.12g063350 Amaranthus hybridus HOM05D007539 ORTHO05D009315 4.5e-40 168.7 110 72.7
vmacro07349 Vaccinium macrocarpon HOM05D007539 ORTHO05D009315 3.6e-37 159.1 110 69.1
AagrBONN_evm.TU.Sc2ySwM_117.3355 Anthoceros agrestis HOM05D007539 ORTHO05D009315 5.7e-35 151.8 162 47.5
Lsat_1_v5_gn_2_18420 Lactuca sativa HOM05D007539 ORTHO05D009315 8.5e-31 137.9 93 69.9
FAN09G1910 Fragaria x ananassa HOM05D007539 ORTHO05D009315 5.5e-30 135.2 77 83.1
Mapoly0014s0214 Marchantia polymorpha HOM05D007539 ORTHO05D009315 1.2e-29 134.0 201 41.8
AUR62040192 Chenopodium quinoa HOM05D007539 ORTHO05D009315 1.0e-28 131.0 93 67.7
QL07p041388 Quercus lobata HOM05D007539 ORTHO05D009315 2.8e-26 122.9 74 74.3
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 2.8e-21 106.3 95 65.3
CBR_g37238 Chara braunii HOM05D007539 ORTHO05D009315 1.3e-18 97.4 115 41.7
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 1.1e-12 77.8 53 71.7
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.9e-10 68.9 92 50.0
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 1.1e-09 67.8 105 45.7
Carub.0006s0240 Capsella rubella HOM05D002804 ORTHO05D003755 7.8e-08 61.6 35 88.6
CSS0032451 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.1e-06 57.8 94 44.7
CSS0027054 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.5e-06 57.4 76 52.6


User provided reference genes

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