Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05802 Brassica carinata HOM05D007539 ORTHO05D009315 2.5e-124 448.7 223 100.0
C03p01600 Brassica napus HOM05D007539 ORTHO05D009315 1.8e-106 389.4 194 100.0
BolC3t12712H Brassica oleracea HOM05D007539 ORTHO05D009315 5.9e-105 384.4 296 70.9
CARHR209760 Cardamine hirsuta HOM05D007539 ORTHO05D009315 1.5e-100 369.8 242 79.8
Thhalv10014552m.g Eutrema salsugineum HOM05D007539 ORTHO05D009315 3.1e-98 362.1 237 80.6
A03p01240 Brassica napus HOM05D007539 ORTHO05D009315 5.3e-98 361.3 237 81.4
BcaB01g05814 Brassica carinata HOM05D007539 ORTHO05D009315 2.8e-91 339.0 194 87.6
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 1.8e-77 293.1 225 66.7
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 5.7e-76 288.1 235 66.8
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 3.7e-75 285.4 234 65.0
Lj5g0010413 Lotus japonicus HOM05D007539 ORTHO05D009315 2.4e-74 282.7 176 76.7
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 1.6e-73 280.0 210 69.0
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 2.0e-73 279.6 236 63.1
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 4.5e-73 278.5 172 79.1
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 7.7e-73 277.7 174 77.6
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 7.7e-73 277.7 174 77.6
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 1.0e-72 277.3 184 72.8
VMungo0720G2140 Vigna mungo HOM05D007539 ORTHO05D009315 2.3e-72 276.2 169 78.7
Glyma.10G063500 Glycine max HOM05D007539 ORTHO05D009315 2.9e-72 275.8 169 77.5
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 3.8e-72 275.4 191 72.3
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 5.0e-72 275.0 191 70.7
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 5.0e-72 275.0 173 78.0
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 6.6e-72 274.6 175 74.9
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 8.6e-72 274.2 218 63.8
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 8.6e-72 274.2 220 64.1
PGR142G1614 Punica granatum HOM05D007539 ORTHO05D009315 8.6e-72 274.2 166 78.3
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 1.9e-71 273.1 237 61.6
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 1.9e-71 273.1 185 70.8
Phvul.007G226000 Phaseolus vulgaris HOM05D007539 ORTHO05D009315 2.5e-71 272.7 169 78.1
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 3.3e-71 272.3 182 72.0
Potri.016G096900 Populus trichocarpa HOM05D007539 ORTHO05D009315 3.3e-71 272.3 223 64.1
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 4.3e-71 271.9 272 59.2
Gohir.D04G106800 Gossypium hirsutum HOM05D007539 ORTHO05D009315 4.3e-71 271.9 172 77.9
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 4.3e-71 271.9 172 74.4
Ah.08g211220 Amaranthus hybridus HOM05D007539 ORTHO05D009315 7.3e-71 271.2 233 64.4
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 7.3e-71 271.2 227 64.8
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 7.3e-71 271.2 227 64.3
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 9.5e-71 270.8 174 72.4
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 9.5e-71 270.8 223 63.2
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 2.1e-70 269.6 230 61.3
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 2.1e-70 269.6 222 62.2
Aqoxy2G01556 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 2.8e-70 269.2 169 76.3
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 3.6e-70 268.9 168 75.6
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 6.1e-70 268.1 229 62.0
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 8.0e-70 267.7 222 62.6
Medtr1g062250 Medicago truncatula HOM05D007539 ORTHO05D009315 1.0e-69 267.3 207 67.6
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 1.4e-69 266.9 222 64.0
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 2.3e-69 266.2 226 63.7
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 3.0e-69 265.8 175 73.7
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 4.0e-69 265.4 229 62.4
SalBow5G4705 Salvia bowleyana HOM05D007539 ORTHO05D009315 5.2e-69 265.0 170 72.9
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 1.2e-68 263.8 183 69.9
Prupe.7G122900 Prunus persica HOM05D007539 ORTHO05D009315 1.5e-68 263.5 233 61.8
EL10Ac7g16719 Beta vulgaris HOM05D007539 ORTHO05D009315 2.6e-68 262.7 177 68.9
Os08g0560600 Oryza sativa ssp. japonica HOM05D007539 ORTHO05D009315 2.6e-68 262.7 183 67.8
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 3.4e-68 262.3 223 62.3
CAN.G729.5 Capsicum annuum HOM05D007539 ORTHO05D009315 4.4e-68 261.9 165 76.4
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 7.5e-68 261.2 231 61.0
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 7.5e-68 261.2 226 60.2
Sed0004549 Sechium edule HOM05D007539 ORTHO05D009315 3.7e-67 258.8 220 62.3
AUR62042699 Chenopodium quinoa HOM05D007539 ORTHO05D009315 8.3e-67 257.7 225 60.4
MBI11_g41953_MAGBIO Magnolia biondii HOM05D007539 ORTHO05D009315 1.1e-66 257.3 230 60.0
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 1.4e-66 256.9 150 82.0
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 4.1e-66 255.4 232 58.6
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 5.4e-66 255.0 226 60.6
Zm00001eb175880 Zea mays HOM05D007539 ORTHO05D009315 5.4e-66 255.0 164 71.3
HPP92_014788 Vanilla planifolia HOM05D007539 ORTHO05D009315 1.2e-65 253.8 168 69.6
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 2.0e-65 253.1 224 59.4
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 2.0e-65 253.1 167 72.5
GSVIVG01033714001 Vitis vinifera HOM05D007539 ORTHO05D009315 3.5e-65 252.3 176 68.2
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 1.0e-64 250.8 233 59.2
Sabra16G0100100 Salix brachista HOM05D007539 ORTHO05D009315 1.3e-64 250.4 266 54.1
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.3e-64 249.6 224 58.9
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 3.0e-64 249.2 181 71.3
unitig_8.g4721 Utricularia gibba HOM05D007539 ORTHO05D009315 5.0e-64 248.4 201 62.2
FAN05G5748 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.3e-63 245.7 167 70.7
ATR0950G005 Amborella trichopoda HOM05D007539 ORTHO05D009315 4.3e-63 245.4 211 58.3
Carub.0006s0239 Capsella rubella HOM05D007539 ORTHO05D009315 1.6e-62 243.4 123 92.7
ECA238G4618 Erigeron canadensis HOM05D007539 ORTHO05D009315 2.1e-62 243.0 166 70.5
FAN02G2576 Fragaria x ananassa HOM05D007539 ORTHO05D009315 8.0e-62 241.1 224 57.6
AL6G13050 Arabidopsis lyrata HOM05D007539 ORTHO05D009315 1.0e-61 240.7 123 91.1
CDE02G3922 Ceratophyllum demersum HOM05D007539 ORTHO05D009315 1.0e-61 240.7 216 56.0
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 1.8e-61 240.0 275 52.4
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 2.3e-61 239.6 195 65.1
Lalb_Chr02g0155351 Lupinus albus HOM05D007539 ORTHO05D009315 1.1e-58 230.7 147 75.5
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 1.4e-58 230.3 143 77.6
Glyma.13G148000 Glycine max HOM05D007539 ORTHO05D009315 1.6e-57 226.9 166 70.5
Ah.12g063350 Amaranthus hybridus HOM05D007539 ORTHO05D009315 3.5e-57 225.7 139 74.8
Nitab4.5_0000725g0080 Nicotiana tabacum HOM05D007539 ORTHO05D009315 3.5e-57 225.7 257 51.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.7e-56 223.4 202 60.9
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 2.1e-54 216.5 209 56.9
vmacro07349 Vaccinium macrocarpon HOM05D007539 ORTHO05D009315 2.8e-54 216.1 139 73.4
Lsat_1_v5_gn_2_18420 Lactuca sativa HOM05D007539 ORTHO05D009315 2.1e-46 189.9 122 73.0
AUR62040192 Chenopodium quinoa HOM05D007539 ORTHO05D009315 3.1e-45 186.0 122 71.3
AagrBONN_evm.TU.Sc2ySwM_117.3355 Anthoceros agrestis HOM05D007539 ORTHO05D009315 1.7e-43 180.3 190 46.8
Mapoly0014s0214 Marchantia polymorpha HOM05D007539 ORTHO05D009315 1.7e-40 170.2 192 47.9
FAN09G1910 Fragaria x ananassa HOM05D007539 ORTHO05D009315 4.8e-30 135.6 77 83.1
QL07p041388 Quercus lobata HOM05D007539 ORTHO05D009315 6.4e-27 125.2 77 72.7
CBR_g37238 Chara braunii HOM05D007539 ORTHO05D009315 1.6e-22 110.5 239 30.5
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 8.1e-22 108.2 99 65.7
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 1.9e-15 87.0 97 58.8
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-10 70.5 92 51.1
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 1.2e-09 67.8 105 47.6
Carub.0006s0240 Capsella rubella HOM05D002804 ORTHO05D003755 1.3e-06 57.8 107 42.1


User provided reference genes

Program Settings