Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 1.0e-33 146.0 66 100.0
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 5.5e-27 123.6 68 88.2
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 9.4e-27 122.9 66 86.4
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 9.4e-27 122.9 66 86.4
BolC3t12740H Brassica oleracea HOM05D008152 ORTHO05D010231 2.8e-23 111.3 62 87.1
BcaB01g05882 Brassica carinata HOM05D008152 ORTHO05D010231 1.1e-22 109.4 63 84.1
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 3.1e-22 107.8 67 79.1
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 9.1e-22 106.3 67 77.6
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 1.2e-21 105.9 67 77.6
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 2.0e-21 105.1 67 77.6
BraA02t04797Z Brassica rapa HOM05D008152 ORTHO05D010231 3.3e-19 97.8 67 70.1
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 7.2e-19 96.7 67 70.1
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 4.7e-18 94.0 67 65.7
BolC2t06131H Brassica oleracea HOM05D008152 ORTHO05D010231 1.0e-17 92.8 71 69.0
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 1.3e-15 85.9 56 71.4
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 8.3e-15 83.2 56 67.9
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 1.1e-14 82.8 60 68.3
Aa31LG1G21240 Aethionema arabicum HOM05D008152 ORTHO05D010231 7.0e-14 80.1 65 60.0
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 4.5e-13 77.4 68 60.3
Sp6g38660 Schrenkiella parvula HOM05D008152 ORTHO05D010231 3.9e-12 74.3 53 73.6
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 1.9e-11 72.0 54 59.3
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 3.3e-11 71.2 66 54.5
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 3.3e-11 71.2 66 54.5
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 4.3e-11 70.9 66 54.5
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 7.3e-11 70.1 56 57.1
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 1.2e-10 69.3 59 57.6
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 6.1e-10 67.0 57 59.6
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 8.0e-10 66.6 53 60.4
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 8.0e-10 66.6 50 60.0
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 1.4e-09 65.9 50 56.0
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 1.8e-09 65.5 52 57.7
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 1.8e-09 65.5 52 57.7
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 1.8e-09 65.5 58 53.4
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 1.8e-09 65.5 60 50.0
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 3.1e-09 64.7 54 55.6
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 3.1e-09 64.7 58 56.9
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 4.0e-09 64.3 56 53.6
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 6.8e-09 63.5 53 58.5
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 8.9e-09 63.2 54 50.0
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 8.9e-09 63.2 57 57.9
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 1.2e-08 62.8 50 60.0
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 1.2e-08 62.8 62 48.4
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 1.2e-08 62.8 48 50.0
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 1.5e-08 62.4 52 55.8
BcaB05g21787 Brassica carinata HOM05D008152 ORTHO05D010231 2.0e-08 62.0 57 63.2
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 2.0e-08 62.0 58 46.6
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 2.0e-08 62.0 63 49.2
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 2.6e-08 61.6 59 49.2
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 4.4e-08 60.8 50 56.0
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 7.5e-08 60.1 50 56.0
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 7.5e-08 60.1 51 54.9
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 1.3e-07 59.3 60 50.0
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 1.3e-07 59.3 51 52.9
C02p01660 Brassica napus HOM05D008152 ORTHO05D010231 2.2e-07 58.5 55 61.8
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 3.7e-07 57.8 48 50.0
Manes.11G003500 Manihot esculenta HOM05D008152 ORTHO05D010231 1.1e-06 56.2 54 46.3
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 1.4e-06 55.8 61 50.8
Sed0008507 Sechium edule HOM05D008152 ORTHO05D010231 1.9e-06 55.5 46 50.0
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 3.2e-06 54.7 59 49.2
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 3.2e-06 54.7 59 49.2
Sed0007854 Sechium edule HOM05D008152 ORTHO05D010231 3.2e-06 54.7 57 47.4
SEGI_34450 Sequoiadendron giganteum HOM05D037356 ORTHO05D010231 4.1e-06 54.3 28 67.9
Ciclev10033235m.g Citrus clementina HOM05D008152 ORTHO05D010231 7.0e-06 53.5 28 75.0
Lj1g0004562 Lotus japonicus HOM05D008152 ORTHO05D010231 7.0e-06 53.5 52 55.8


User provided reference genes

Program Settings