Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05748 Brassica carinata HOM05D001009 ORTHO05D000829 1.1e-35 152.9 86 100.0
BraA10t45075Z Brassica rapa HOM05D001009 ORTHO05D000829 8.3e-15 83.6 137 49.6
Carub.0006s0489 Capsella rubella HOM05D001009 ORTHO05D000829 5.4e-14 80.9 136 47.8
A10p30360 Brassica napus HOM05D001009 ORTHO05D000829 7.0e-14 80.5 110 46.4
CARHR207220 Cardamine hirsuta HOM05D001009 ORTHO05D000829 7.0e-14 80.5 136 47.8
BcaC06g32313 Brassica carinata HOM05D001009 ORTHO05D000829 9.1e-14 80.1 109 45.9
C09p70800 Brassica napus HOM05D001009 ORTHO05D000829 9.1e-14 80.1 109 45.9
BolC9t59839H Brassica oleracea HOM05D001009 ORTHO05D000829 9.1e-14 80.1 109 45.9
Thhalv10014433m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 1.2e-13 79.7 111 45.9
BcaNung06230 Brassica carinata HOM05D001009 ORTHO05D000829 1.6e-13 79.3 109 46.8
A03p02510 Brassica napus HOM05D001009 ORTHO05D000829 2.0e-13 79.0 110 45.5
BraA03t09612Z Brassica rapa HOM05D001009 ORTHO05D000829 2.0e-13 79.0 110 45.5
AT5G05990 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 1.0e-12 76.6 134 46.3
Aa31LG11G7040 Aethionema arabicum HOM05D001009 ORTHO05D000829 1.3e-12 76.3 114 43.0
BcaB01g05969 Brassica carinata HOM05D001009 ORTHO05D000829 2.3e-12 75.5 107 44.9
C03p02850 Brassica napus HOM05D001009 ORTHO05D000829 2.3e-12 75.5 107 44.9
BolC3t12840H Brassica oleracea HOM05D001009 ORTHO05D000829 2.3e-12 75.5 107 44.9
Sp6g36890 Schrenkiella parvula HOM05D001009 ORTHO05D000829 2.9e-12 75.1 109 45.0
AL6G15950 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 1.6e-10 69.3 107 42.1
THA.LOC104816579 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 1.6e-10 69.3 115 37.4
DCAR_027590 Daucus carota HOM05D001009 ORTHO05D000829 8.3e-07 57.0 35 68.6
Gohir.D04G064900 Gossypium hirsutum HOM05D001009 ORTHO05D000829 8.3e-07 57.0 111 32.4
Gorai.012G073000 Gossypium raimondii HOM05D001009 ORTHO05D000829 8.3e-07 57.0 111 32.4
vmacro10213 Vaccinium macrocarpon HOM05D001009 ORTHO05D000829 8.3e-07 57.0 111 33.3
Cpa.g.sc454.2 Carica papaya HOM05D001009 ORTHO05D000829 1.4e-06 56.2 35 71.4
Dinv34469 Davidia involucrata HOM05D001009 ORTHO05D000829 1.4e-06 56.2 35 68.6
Glyma.02G251000 Glycine max HOM05D001009 ORTHO05D000829 1.4e-06 56.2 35 71.4
VMungo0647G0043 Vigna mungo HOM05D001009 ORTHO05D000829 1.4e-06 56.2 35 71.4
GSVIVG01016468001 Vitis vinifera HOM05D001009 ORTHO05D000829 1.4e-06 56.2 35 71.4
Haze_17127 Corylus avellana HOM05D001009 ORTHO05D000829 1.8e-06 55.8 35 74.3
Cfa001417 Carpinus fangiana HOM05D001009 ORTHO05D000829 2.4e-06 55.5 35 71.4
COL.COLO4_25520 Corchorus olitorius HOM05D001009 ORTHO05D000829 2.4e-06 55.5 35 71.4
Duzib106G0916 Durio zibethinus HOM05D001009 ORTHO05D000829 2.4e-06 55.5 130 32.3
Eucgr.G02989 Eucalyptus grandis HOM05D001009 ORTHO05D000829 2.4e-06 55.5 35 68.6
PGR142G2699 Punica granatum HOM05D001009 ORTHO05D000829 2.4e-06 55.5 35 68.6
TAR633G2372 Trochodendron aralioides HOM05D001009 ORTHO05D000829 2.4e-06 55.5 35 68.6
Actinidia13891 Actinidia chinensis HOM05D001009 ORTHO05D000829 3.1e-06 55.1 114 32.5
CSS0002250 Camellia sinensis var. sinensis HOM05D001009 ORTHO05D000829 3.1e-06 55.1 114 31.6
Ca_05905_v3 Cicer arietinum L. HOM05D001009 ORTHO05D000829 3.1e-06 55.1 35 68.6
Cc02_g07350 Coffea canephora HOM05D001009 ORTHO05D000829 3.1e-06 55.1 35 65.7
Os01g0143300 Oryza sativa ssp. japonica HOM05D001009 ORTHO05D000829 3.1e-06 55.1 35 65.7
Sc11g0007650 Simmondsia chinensis HOM05D001009 ORTHO05D000829 3.1e-06 55.1 35 71.4
Actinidia02375 Actinidia chinensis HOM05D001009 ORTHO05D000829 4.1e-06 54.7 141 29.8
Lj8A78T47 Lonicera japonica HOM05D001009 ORTHO05D000829 4.1e-06 54.7 35 65.7
LjContig00141g0011947 Lotus japonicus HOM05D001009 ORTHO05D000829 4.1e-06 54.7 35 65.7
Rhsim09G0168700 Rhododendron simsii HOM05D001009 ORTHO05D000829 4.1e-06 54.7 35 65.7
TPR.G25850 Trifolium pratense HOM05D001009 ORTHO05D000829 4.1e-06 54.7 35 62.9
CANSAT56G1474 Cannabis sativa HOM05D001009 ORTHO05D000829 5.4e-06 54.3 35 68.6
ClCG11G006610 Citrullus lanatus HOM05D001009 ORTHO05D000829 5.4e-06 54.3 35 65.7
Glyma.14G065700 Glycine max HOM05D001009 ORTHO05D000829 5.4e-06 54.3 35 68.6
Phvul.008G230400 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 5.4e-06 54.3 35 68.6
QL08p061631 Quercus lobata HOM05D001009 ORTHO05D000829 5.4e-06 54.3 34 67.6
MBI05_g02642_MAGBIO Magnolia biondii HOM05D001009 ORTHO05D000829 9.2e-06 53.5 35 65.7
Sed0007137 Sechium edule HOM05D001009 ORTHO05D000829 9.2e-06 53.5 35 65.7


User provided reference genes

Program Settings