Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05692 Brassica carinata HOM05D007846 ORTHO05D010837 2.2e-89 332.4 183 100.0
BcaB01g06047 Brassica carinata HOM05D007846 ORTHO05D010837 3.0e-46 189.1 148 77.0
A03p03350 Brassica napus HOM05D007846 ORTHO05D010837 3.0e-46 189.1 139 79.9
C03p03790 Brassica napus HOM05D007846 ORTHO05D010837 3.0e-46 189.1 148 77.0
BcaB01g06048 Brassica carinata HOM05D007846 ORTHO05D010837 3.9e-30 135.6 103 80.6
BcaB01g06046 Brassica carinata HOM05D007846 ORTHO05D010837 3.2e-24 115.9 220 41.8
BolC3t12914H Brassica oleracea HOM05D007846 ORTHO05D010837 1.6e-23 113.6 226 40.7
BraA03t09686Z Brassica rapa HOM05D007846 ORTHO05D010837 5.6e-21 105.1 215 41.4
A03p03340 Brassica napus HOM05D007846 ORTHO05D010837 1.3e-20 104.0 218 40.8
Carub.0006s0651 Capsella rubella HOM05D007846 ORTHO05D010837 1.3e-20 104.0 98 63.3
AT5G07530 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 3.7e-20 102.4 98 62.2
C08p18270 Brassica napus HOM05D007846 ORTHO05D010837 6.2e-20 101.7 90 70.0
AL6G17840 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 8.2e-20 101.3 113 59.3
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 8.2e-20 101.3 98 63.3
BolC8t49462H Brassica oleracea HOM05D007846 ORTHO05D010837 1.4e-19 100.5 90 68.9
BraA08t34994Z Brassica rapa HOM05D007846 ORTHO05D010837 1.4e-19 100.5 90 68.9
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 2.4e-19 99.8 98 62.2
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 2.4e-19 99.8 92 67.4
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 2.4e-19 99.8 98 62.2
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 2.4e-19 99.8 98 62.2
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 5.3e-19 98.6 92 67.4
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 5.3e-19 98.6 92 67.4
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 1.2e-18 97.4 92 67.4
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 1.2e-18 97.4 92 67.4
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 1.2e-18 97.4 92 67.4
Thhalv10013795m.g Eutrema salsugineum HOM05D007846 ORTHO05D195878 1.2e-18 97.4 160 46.9
BcaC06g32487 Brassica carinata HOM05D007846 ORTHO05D010837 2.6e-18 96.3 84 70.2
C09p69650 Brassica napus HOM05D007846 ORTHO05D010837 3.4e-18 95.9 92 64.1
BolC9t59708H Brassica oleracea HOM05D007846 ORTHO05D010837 3.4e-18 95.9 92 64.1
CARHR205620 Cardamine hirsuta HOM05D007846 ORTHO05D010837 1.3e-17 94.0 129 49.6
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 2.2e-17 93.2 112 50.9
C02p03180 Brassica napus HOM05D007846 ORTHO05D010837 3.8e-17 92.4 135 49.6
BolC2t06280H Brassica oleracea HOM05D007846 ORTHO05D010837 3.8e-17 92.4 135 49.6
Sp6g35340 Schrenkiella parvula HOM05D007846 ORTHO05D371621 5.5e-16 88.6 137 50.4
BcaB05g21610 Brassica carinata HOM05D007846 ORTHO05D010837 7.1e-16 88.2 84 63.1
Carub.0006s0650 Capsella rubella HOM05D007846 ORTHO05D010837 2.7e-15 86.3 110 53.6
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 6.0e-15 85.1 100 58.0
BraA02t04922Z Brassica rapa HOM05D007846 ORTHO05D010837 6.0e-15 85.1 114 53.5
BcaC06g32488 Brassica carinata HOM05D021341 ORTHO05D093304 1.0e-14 84.3 121 52.9
BcaC03g13197 Brassica carinata HOM05D007846 ORTHO05D010837 1.3e-14 84.0 84 61.9
AT5G07540 Arabidopsis thaliana HOM05D007846 ORTHO05D031404 1.8e-14 83.6 103 50.5
AL6G17830 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 3.9e-14 82.4 96 57.3
AL6G17850 Arabidopsis lyrata HOM05D007846 ORTHO05D031404 6.7e-14 81.6 103 50.5
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 6.7e-14 81.6 83 63.9
Sp6g35350 Schrenkiella parvula HOM05D007846 ORTHO05D010837 6.7e-14 81.6 97 58.8
Carub.0006s0658 Capsella rubella HOM05D007846 ORTHO05D010837 1.5e-13 80.5 95 55.8
AT5G07520 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 2.5e-13 79.7 106 51.9
Thhalv10014560m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 2.2e-12 76.6 82 61.0
C09p69670 Brassica napus HOM05D007846 ORTHO05D021761 6.3e-12 75.1 112 44.6
BolC9t59710H Brassica oleracea HOM05D007846 ORTHO05D021761 6.3e-12 75.1 112 44.6
Aa31LG3G18890 Aethionema arabicum HOM05D007846 ORTHO05D010837 1.4e-11 73.9 146 39.7
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 6.9e-11 71.6 85 60.0
Thhalv10014587m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 9.0e-11 71.2 58 74.1
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 1.2e-10 70.9 106 47.2
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 2.0e-10 70.1 108 45.4
A10p29300 Brassica napus HOM05D007846 ORTHO05D021761 2.6e-10 69.7 112 43.8
BraA10t44974Z Brassica rapa HOM05D007846 ORTHO05D021761 2.6e-10 69.7 112 43.8
A10p29260 Brassica napus HOM05D007846 ORTHO05D010837 3.4e-10 69.3 92 50.0
BraA10t44972Z Brassica rapa HOM05D007846 ORTHO05D010837 3.4e-10 69.3 92 50.0
BcaC06g32424 Brassica carinata HOM05D007846 ORTHO05D021761 4.5e-10 68.9 88 47.7
BcaC06g32490 Brassica carinata HOM05D007846 ORTHO05D000624 4.5e-10 68.9 108 49.1
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 5.9e-10 68.6 105 47.6
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 1.7e-09 67.0 83 48.2
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 2.2e-09 66.6 102 48.0
A10p29310 Brassica napus HOM05D007846 ORTHO05D023961 2.9e-09 66.2 77 51.9
BraA10t44975Z Brassica rapa HOM05D007846 ORTHO05D023961 2.9e-09 66.2 77 51.9
AL6G17810 Arabidopsis lyrata HOM05D007846 ORTHO05D038626 3.8e-09 65.9 85 55.3
BcaC06g32423 Brassica carinata HOM05D007846 ORTHO05D023961 5.0e-09 65.5 103 46.6
C09p69680 Brassica napus HOM05D007846 ORTHO05D023961 5.0e-09 65.5 103 46.6
BolC9t59711H Brassica oleracea HOM05D007846 ORTHO05D023961 5.0e-09 65.5 103 46.6
BcaC06g32425 Brassica carinata HOM05D021341 ORTHO05D024077 6.5e-09 65.1 73 56.2
C09p69660 Brassica napus HOM05D021341 ORTHO05D024077 6.5e-09 65.1 73 56.2
BolC9t59709H Brassica oleracea HOM05D021341 ORTHO05D024077 6.5e-09 65.1 73 56.2
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 6.5e-09 65.1 101 43.6
A10p29270 Brassica napus HOM05D021341 ORTHO05D024077 1.4e-08 63.9 103 48.5
BraA10t44973Z Brassica rapa HOM05D021341 ORTHO05D024077 1.4e-08 63.9 103 48.5
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 1.9e-08 63.5 101 44.6
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 2.5e-08 63.2 101 44.6
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 4.2e-08 62.4 90 40.0
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 9.4e-08 61.2 79 49.4
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 1.6e-07 60.5 105 41.0
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 2.7e-07 59.7 101 42.6
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 2.7e-07 59.7 101 42.6
Carub.0006s0652 Capsella rubella HOM05D007846 ORTHO05D031404 3.6e-07 59.3 114 40.4
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 4.6e-07 58.9 105 41.9
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 1.4e-06 57.4 96 42.7
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 3.0e-06 56.2 80 47.5
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 3.0e-06 56.2 83 43.4
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 3.9e-06 55.8 83 43.4
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 3.9e-06 55.8 99 40.4
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 8.8e-06 54.7 83 42.2
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 8.8e-06 54.7 83 42.2
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 8.8e-06 54.7 71 47.9
Lsat_1_v5_gn_0_35501 Lactuca sativa HOM05D000805 ORTHO05D000624 8.8e-06 54.7 72 44.4
Lsat_1_v5_gn_2_127000 Lactuca sativa HOM05D000805 ORTHO05D000624 8.8e-06 54.7 95 40.0


User provided reference genes

Program Settings