Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 8.3e-53 210.7 159 100.0
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 6.6e-50 201.1 159 97.5
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 6.6e-50 201.1 159 97.5
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 1.9e-49 199.5 159 96.9
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 5.6e-49 198.0 159 96.2
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 1.4e-47 193.4 160 95.6
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 7.5e-46 187.6 159 92.5
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 3.0e-42 175.6 159 89.3
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 1.4e-39 166.8 159 83.6
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 8.9e-39 164.1 159 83.6
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.5e-38 163.3 159 84.3
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 3.4e-38 162.2 159 84.9
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 1.9e-36 156.4 157 84.7
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 6.0e-35 151.4 175 76.6
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 5.1e-26 121.7 168 70.2
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 8.6e-26 120.9 166 71.7
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 9.6e-25 117.5 151 70.9
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 2.8e-24 115.9 161 70.2
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 6.2e-24 114.8 152 70.4
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 6.2e-24 114.8 161 69.6
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 8.1e-24 114.4 147 72.8
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 8.1e-24 114.4 155 71.0
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 2.4e-23 112.8 152 72.4
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 3.1e-23 112.5 166 67.5
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 4.0e-23 112.1 166 65.1
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 5.2e-23 111.7 164 67.1
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 8.9e-23 110.9 169 67.5
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 1.2e-22 110.5 162 66.7
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 2.6e-22 109.4 168 63.1
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 2.6e-22 109.4 165 68.5
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 2.6e-22 109.4 166 69.3
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 3.4e-22 109.0 166 66.3
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 4.4e-22 108.6 168 67.9
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 5.8e-22 108.2 160 66.9
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 5.8e-22 108.2 168 65.5
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 7.6e-22 107.8 169 65.1
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 7.6e-22 107.8 142 73.9
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 7.6e-22 107.8 163 65.6
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 9.9e-22 107.5 164 64.6
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 9.9e-22 107.5 164 66.5
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 1.3e-21 107.1 161 67.1
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 1.3e-21 107.1 165 66.7
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 1.3e-21 107.1 167 65.3
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 1.3e-21 107.1 143 73.4
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 1.3e-21 107.1 166 66.3
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 1.3e-21 107.1 158 65.2
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 1.7e-21 106.7 174 63.8
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 1.7e-21 106.7 169 66.3
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 1.7e-21 106.7 168 64.9
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 1.7e-21 106.7 151 70.2
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 1.7e-21 106.7 162 66.7
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 1.7e-21 106.7 163 66.9
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 2.2e-21 106.3 162 65.4
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 2.9e-21 105.9 169 65.1
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 2.9e-21 105.9 165 65.5
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 3.8e-21 105.5 122 76.2
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 4.9e-21 105.1 165 66.7
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 4.9e-21 105.1 167 67.1
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 4.9e-21 105.1 163 66.9
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 4.9e-21 105.1 162 67.9
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 4.9e-21 105.1 142 72.5
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 6.4e-21 104.8 161 66.5
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 8.4e-21 104.4 165 66.1
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 8.4e-21 104.4 162 66.0
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 8.4e-21 104.4 164 65.9
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 1.1e-20 104.0 167 64.7
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 1.1e-20 104.0 164 67.7
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 1.4e-20 103.6 158 64.6
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 1.9e-20 103.2 120 77.5
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 1.9e-20 103.2 161 64.0
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 1.9e-20 103.2 149 68.5
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 4.2e-20 102.1 170 64.1
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 4.2e-20 102.1 152 69.7
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 5.4e-20 101.7 159 70.4
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 5.4e-20 101.7 191 58.6
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 7.1e-20 101.3 125 76.0
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 7.1e-20 101.3 184 61.4
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 9.3e-20 100.9 150 69.3
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 3.5e-19 99.0 169 64.5
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 4.6e-19 98.6 166 63.9
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 4.6e-19 98.6 146 70.5
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 6.0e-19 98.2 138 69.6
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 6.0e-19 98.2 138 69.6
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 6.0e-19 98.2 150 68.7
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 1.0e-18 97.4 169 63.9
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 1.3e-18 97.1 145 68.3
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 1.3e-18 97.1 171 61.4
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 1.7e-18 96.7 162 66.0
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 2.3e-18 96.3 150 66.7
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 2.3e-18 96.3 150 68.0
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 3.0e-18 95.9 169 63.3
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 3.0e-18 95.9 169 63.3
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 3.9e-18 95.5 167 62.9
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 3.9e-18 95.5 163 66.3
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 8.7e-18 94.4 153 64.7
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 1.9e-17 93.2 127 72.4
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 2.1e-16 89.7 87 74.7
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 2.1e-16 89.7 128 67.2
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 2.8e-16 89.4 67 68.7
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 1.8e-15 86.7 120 70.8
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 2.4e-15 86.3 151 61.6
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 2.4e-15 86.3 124 69.4
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 2.0e-14 83.2 158 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 2.6e-14 82.8 120 74.2
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 6.4e-13 78.2 67 62.7
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 1.2e-11 73.9 77 54.5
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 5.6e-09 65.1 138 37.7


User provided reference genes

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