Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 8.2e-213 743.4 367 100.0
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 1.1e-185 653.3 369 89.7
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 2.5e-185 652.1 369 89.2
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 2.5e-185 652.1 369 89.2
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.0e-183 646.7 369 88.9
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 3.5e-179 631.7 367 84.5
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 3.8e-178 628.2 367 83.9
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 7.8e-171 604.0 368 81.2
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.9e-169 599.4 368 81.5
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.1e-168 595.9 368 80.7
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 7.5e-166 587.4 366 79.0
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 2.6e-158 562.4 310 90.0
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.4e-158 561.6 369 75.6
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.3e-138 496.9 376 68.4
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 4.3e-137 491.9 370 66.8
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 6.7e-130 468.0 376 63.6
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 1.8e-127 459.9 377 62.9
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 9.0e-127 457.6 370 63.5
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.5e-126 456.8 372 61.0
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 6.0e-123 444.9 373 60.3
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.9e-122 442.2 372 62.6
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 9.6e-121 437.6 356 64.6
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.5e-118 430.3 376 59.8
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 5.8e-118 428.3 373 57.9
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 5.8e-118 428.3 378 57.7
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 5.8e-118 428.3 380 59.2
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.0e-117 427.6 378 56.6
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.3e-117 427.2 378 57.4
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.9e-116 423.3 376 57.2
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 5.5e-116 421.8 373 56.8
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 4.6e-115 418.7 374 57.8
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.0e-115 418.3 380 57.4
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 4.8e-112 408.7 374 56.7
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 7.6e-110 401.4 385 56.1
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.3e-109 400.6 352 59.1
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 8.5e-109 397.9 293 64.8
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 7.2e-108 394.8 378 55.6
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 9.3e-108 394.4 378 55.3
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 2.7e-107 392.9 374 57.5
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 4.6e-107 392.1 292 68.8
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.0e-106 391.0 379 54.4
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 3.0e-106 389.4 298 63.4
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 3.0e-106 389.4 353 56.9
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.9e-105 386.7 309 64.1
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 1.3e-104 384.0 357 56.3
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 6.3e-104 381.7 302 63.2
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.8e-103 380.2 375 54.1
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 1.8e-103 380.2 292 65.8
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.5e-102 377.1 306 62.4
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 2.0e-102 376.7 373 55.2
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.0e-101 374.4 288 65.3
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.0e-101 374.4 308 61.0
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.2e-101 373.2 294 61.2
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 2.2e-101 373.2 310 60.0
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 2.9e-101 372.9 302 60.6
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 6.5e-101 371.7 377 54.6
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 1.1e-100 370.9 302 61.3
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 2.5e-100 369.8 307 60.3
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 3.2e-100 369.4 364 54.1
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 4.2e-100 369.0 360 53.9
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 4.2e-100 369.0 287 62.7
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 5.5e-100 368.6 297 62.3
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 9.4e-100 367.9 346 56.1
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.6e-99 367.1 412 50.2
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 1.6e-99 367.1 329 58.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.7e-99 366.3 352 55.7
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 3.6e-99 365.9 303 62.4
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 7.9e-99 364.8 301 60.1
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 9.7e-97 357.8 270 64.8
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.7e-96 357.1 271 65.7
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.7e-96 355.9 272 63.6
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 4.8e-96 355.5 289 61.6
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 4.8e-96 355.5 290 62.1
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 6.3e-96 355.1 307 59.6
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.1e-95 354.4 270 67.0
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 2.4e-95 353.2 334 56.9
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 9.1e-95 351.3 296 59.8
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 9.1e-95 351.3 288 60.8
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.2e-94 350.9 281 61.9
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 1.2e-94 350.9 374 52.7
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 3.4e-94 349.4 288 62.2
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 5.9e-94 348.6 292 62.7
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 5.9e-94 348.6 382 51.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 7.7e-94 348.2 359 54.9
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 2.2e-93 346.7 332 55.4
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 2.9e-93 346.3 332 55.4
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 8.5e-93 344.7 265 64.9
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.4e-92 344.0 353 53.5
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 5.5e-92 342.0 300 58.3
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 1.4e-90 337.4 300 57.0
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.8e-90 337.0 300 56.7
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 3.9e-90 335.9 294 58.8
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 2.6e-89 333.2 389 47.6
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 9.7e-89 331.3 298 57.7
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.2e-88 330.1 246 67.1
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 2.8e-88 329.7 487 41.9
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 3.7e-88 329.3 320 54.7
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 3.8e-85 319.3 272 57.7
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.9e-84 317.0 314 52.5
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.2e-83 314.3 273 58.2
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 2.1e-83 313.5 278 57.9
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 4.7e-83 312.4 271 59.4
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 3.0e-82 309.7 285 56.1
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 5.2e-82 308.9 258 63.2
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 1.5e-81 307.4 237 66.7
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-79 301.2 313 52.1
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 2.4e-79 300.1 277 56.0
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 7.0e-79 298.5 339 50.4
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 7.0e-79 298.5 229 67.7
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 5.9e-78 295.4 236 64.0
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.6e-75 287.3 240 60.4
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 3.0e-74 283.1 225 62.2
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.2e-73 281.2 195 69.7
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 5.9e-70 268.9 259 54.1
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.5e-68 264.2 262 51.5
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 5.7e-65 252.3 232 55.2
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 2.3e-61 240.4 190 58.4
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.6e-59 233.0 272 46.0
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 2.3e-53 213.8 300 42.0
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 3.6e-43 179.9 243 43.2
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 4.7e-43 179.5 133 60.2
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.5e-36 157.1 138 62.3
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 7.3e-36 155.6 145 62.1
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 2.4e-34 150.6 144 54.9
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 7.1e-23 112.5 348 27.6
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 4.6e-22 109.8 68 69.1
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 1.8e-13 81.3 80 51.2
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 2.8e-11 73.9 44 75.0


User provided reference genes

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