Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 6.9e-284 979.9 487 100.0
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.6e-280 968.8 487 98.4
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 3.5e-280 967.6 487 98.2
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 6.1e-280 966.8 486 98.4
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 1.8e-279 965.3 487 98.2
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 2.3e-279 964.9 488 97.3
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 2.3e-279 964.9 486 98.1
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 3.0e-279 964.5 487 97.9
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 6.7e-279 963.4 487 97.9
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 6.7e-279 963.4 487 97.9
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.1e-278 962.6 487 97.7
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.5e-278 962.2 484 98.6
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 2.5e-278 961.4 487 98.2
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 3.3e-278 961.1 487 97.3
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 4.3e-278 960.7 489 97.8
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 1.6e-277 958.7 487 97.7
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 2.4e-276 954.9 485 98.4
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.6e-272 942.2 487 94.5
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.1e-268 929.5 486 93.8
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 3.2e-265 917.9 485 92.2
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 3.6e-264 914.4 487 92.6
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 6.1e-264 913.7 487 90.8
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 7.9e-264 913.3 484 91.7
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.4e-263 912.5 484 91.7
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 3.0e-263 911.4 487 92.2
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 3.9e-263 911.0 484 91.7
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 3.9e-263 911.0 484 91.1
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 6.7e-263 910.2 487 90.3
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 6.7e-263 910.2 487 90.3
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.1e-262 909.4 485 91.3
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.1e-262 909.4 487 91.4
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.1e-262 909.4 487 90.3
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.5e-262 909.1 487 89.5
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.5e-262 909.1 484 91.1
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 2.0e-262 908.7 484 91.5
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.6e-262 908.3 487 90.1
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 3.3e-262 907.9 485 90.9
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 4.4e-262 907.5 486 91.4
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.4e-262 907.5 487 90.1
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 5.7e-262 907.1 484 90.9
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 7.4e-262 906.7 486 91.4
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 7.4e-262 906.7 486 90.5
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.3e-261 906.0 487 89.7
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.7e-261 905.6 484 91.1
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.7e-261 905.6 487 90.1
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 1.7e-261 905.6 486 91.4
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.2e-261 905.2 487 92.0
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.8e-261 904.8 487 88.7
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.8e-261 904.8 487 90.1
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.8e-261 904.8 487 90.6
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.7e-261 904.4 487 89.9
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.7e-261 904.4 485 90.5
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 3.7e-261 904.4 485 91.1
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 3.7e-261 904.4 486 90.3
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 3.7e-261 904.4 486 90.3
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 4.8e-261 904.0 486 90.3
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 6.3e-261 903.7 487 89.7
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 6.3e-261 903.7 484 91.5
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.2e-261 903.3 487 89.1
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 8.2e-261 903.3 486 91.8
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.2e-261 903.3 486 90.7
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 8.2e-261 903.3 487 91.2
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.1e-260 902.9 487 89.9
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.1e-260 902.9 480 90.8
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.4e-260 902.5 486 90.3
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 1.8e-260 902.1 487 90.1
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.8e-260 902.1 487 91.0
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.8e-260 902.1 486 90.9
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.8e-260 902.1 486 90.9
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 3.1e-260 901.4 483 90.3
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 4.1e-260 901.0 484 91.3
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 4.1e-260 901.0 486 90.7
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 9.1e-260 899.8 487 89.7
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 1.6e-259 899.0 486 91.2
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.0e-259 898.7 485 90.1
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.6e-259 898.3 486 90.9
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 2.6e-259 898.3 465 94.4
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.5e-259 897.9 487 89.7
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 3.5e-259 897.9 487 89.3
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.5e-259 897.9 487 89.9
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 1.0e-258 896.3 487 89.7
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.3e-258 896.0 486 89.1
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.3e-258 896.0 486 90.3
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 2.2e-258 895.2 484 90.1
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 2.2e-258 895.2 493 90.7
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 2.9e-258 894.8 486 90.9
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 3.8e-258 894.4 480 90.0
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 3.8e-258 894.4 492 89.4
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 5.0e-258 894.0 487 89.5
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 5.0e-258 894.0 479 90.8
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 5.0e-258 894.0 487 89.1
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 6.5e-258 893.6 484 89.9
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 6.5e-258 893.6 479 91.4
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.1e-257 892.9 485 89.3
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.1e-257 892.9 487 87.9
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.5e-257 891.7 483 89.6
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 3.2e-257 891.3 487 89.7
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 4.2e-257 891.0 483 89.9
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 5.5e-257 890.6 487 88.1
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 7.2e-257 890.2 486 89.1
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 7.2e-257 890.2 460 95.2
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 1.6e-256 889.0 465 93.5
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 2.1e-256 888.6 477 91.2
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 4.7e-256 887.5 482 89.6
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 5.7e-254 880.6 437 94.5
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 7.5e-254 880.2 478 88.9
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.7e-250 869.0 484 89.5
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.1e-249 866.3 460 92.0
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.7e-248 861.7 490 87.6
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.8e-247 859.0 436 92.7
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 4.0e-247 857.8 436 92.0
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 9.8e-246 853.2 483 87.2
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 2.4e-244 848.6 439 91.3
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.1e-244 848.2 433 90.8
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 4.7e-240 834.3 431 89.1
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 8.8e-239 830.1 407 96.1
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 8.8e-239 830.1 434 88.7
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 5.4e-236 820.8 408 94.4
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 7.0e-236 820.5 406 94.3
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.7e-235 818.5 405 94.3
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 3.8e-234 814.7 407 93.9
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 4.4e-230 801.2 433 86.8
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.4e-221 770.8 486 79.0
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 1.1e-220 770.0 384 94.3
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 1.1e-220 770.0 427 83.6
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 4.1e-220 768.1 436 82.6
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.7e-218 762.7 421 82.4
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 1.3e-205 719.9 376 91.0
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 4.1e-204 714.9 481 77.1
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 6.6e-202 707.6 393 88.0
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 9.0e-191 670.6 369 89.4
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.4e-189 664.5 346 91.3
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 2.5e-185 652.5 395 75.2
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-181 639.4 486 70.8
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.8e-176 622.5 315 92.7
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.5e-172 608.2 487 68.6
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.1e-172 607.8 486 68.5
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.7e-170 600.9 486 68.3
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 2.5e-164 582.8 336 87.2
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.0e-146 524.2 279 88.5
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.5e-140 501.9 351 72.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.2e-126 457.6 275 76.0
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 8.9e-114 414.8 203 96.1
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 8.1e-99 365.2 180 93.3
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.2e-95 353.2 191 86.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.5e-94 349.7 172 96.5
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.0e-90 336.3 171 91.8
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.9e-79 300.8 485 41.0
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 8.1e-75 285.4 146 91.1
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 6.7e-69 265.8 146 87.0
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 5.3e-66 256.1 164 81.7
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 2.2e-64 250.8 127 94.5
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 5.5e-63 246.1 127 86.6
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 4.8e-59 233.0 147 84.4
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.3e-53 214.2 259 43.6
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 7.4e-52 209.1 100 96.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-49 201.4 102 93.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.3e-44 183.7 127 75.6
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 5.1e-37 159.8 102 78.4
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.7e-35 154.8 77 97.4
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.7e-35 154.8 77 97.4
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.5e-33 146.7 108 67.6
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.8e-29 134.8 69 97.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.8e-29 132.5 71 90.1
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 1.5e-28 131.7 197 37.6
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.7e-27 127.1 68 88.2
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.1e-26 124.0 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.1e-26 124.0 65 89.2
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.6e-25 121.7 66 87.9
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.5e-25 120.6 66 86.4
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.6e-22 110.5 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.0e-21 107.5 67 70.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 2.8e-19 100.9 67 68.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 6.5e-16 89.7 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 4.0e-13 80.5 71 56.3
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 8.8e-13 79.3 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.0e-12 78.2 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.6e-09 68.6 61 57.4


User provided reference genes

Program Settings