Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.9e-53 212.2 104 100.0
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.9e-53 212.2 104 100.0
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 6.2e-33 144.1 102 72.5
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.2e-31 139.8 106 73.6
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 2.0e-31 139.0 100 72.0
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.4e-31 138.3 99 71.7
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.9e-27 124.8 105 69.5
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 8.7e-27 123.6 104 67.3
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 2.1e-25 119.0 105 66.7
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-22 109.0 105 61.9
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 2.5e-18 95.5 106 56.6
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-17 92.0 91 59.3
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 4.8e-17 91.3 106 55.7
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 6.9e-16 87.4 91 57.1
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 6.9e-16 87.4 91 57.1
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 1.5e-15 86.3 91 56.0
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.0e-15 85.9 107 51.4
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 2.6e-15 85.5 101 50.5
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 2.6e-15 85.5 101 50.5
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 2.6e-15 85.5 101 50.5
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.2e-14 82.4 45 86.7
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.8e-14 81.6 99 50.5
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.0e-14 81.3 109 52.3
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 5.0e-14 81.3 104 51.0
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 5.0e-14 81.3 104 51.0
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 5.0e-14 81.3 104 51.0
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 5.0e-14 81.3 104 51.0
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-13 79.7 106 50.0
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 1.4e-13 79.7 106 50.0
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 1.4e-13 79.7 106 50.0
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.4e-13 79.7 104 50.0
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 1.9e-13 79.3 102 49.0
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 3.2e-13 78.6 95 48.4
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 7.2e-13 77.4 105 50.5
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-12 76.6 105 51.4
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 1.2e-12 76.6 101 48.5
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 3.6e-12 75.1 109 48.6
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 3.6e-12 75.1 106 49.1
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 4.6e-12 74.7 97 48.5
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 2.5e-10 68.9 99 44.4
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 7.4e-10 67.4 86 40.7
BcaB05g21528 Brassica carinata HOM05D004540 ORTHO05D004852 9.7e-10 67.0 109 47.7
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.2e-09 65.9 83 41.0
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.8e-09 65.5 85 38.8
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 3.7e-09 65.1 92 38.0
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 8.2e-09 63.9 80 41.2
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 8.2e-09 63.9 80 41.2
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 8.2e-09 63.9 80 41.2
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 8.2e-09 63.9 83 42.2
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.4e-08 63.2 91 39.6
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-08 62.8 87 39.1
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 2.4e-08 62.4 95 37.9
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 3.1e-08 62.0 37 75.7
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 4.1e-08 61.6 83 39.8
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 4.1e-08 61.6 83 39.8
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-07 60.1 90 38.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.2e-07 60.1 91 38.5
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.2e-07 60.1 82 36.6
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.2e-07 60.1 82 36.6
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.2e-07 60.1 82 36.6
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.5e-07 59.7 90 35.6
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.0e-07 59.3 78 41.0
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.0e-07 59.3 78 41.0
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.0e-07 59.3 81 39.5
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.0e-07 59.3 85 40.0
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.0e-07 59.3 85 40.0
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 2.6e-07 58.9 78 39.7
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 2.6e-07 58.9 78 39.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.6e-07 58.9 85 40.0
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.6e-07 58.9 77 41.6
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 4.5e-07 58.2 78 42.3
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 5.9e-07 57.8 76 39.5
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.3e-06 56.6 81 37.0
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-06 56.6 88 38.6
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.7e-06 56.2 89 36.0
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 2.2e-06 55.8 81 37.0
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 2.2e-06 55.8 77 39.0
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 2.9e-06 55.5 87 35.6
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.9e-06 55.5 86 34.9
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 5.0e-06 54.7 79 38.0
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 5.0e-06 54.7 83 42.2
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 6.5e-06 54.3 104 37.5
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 6.5e-06 54.3 104 37.5
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 6.5e-06 54.3 109 36.7
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 6.5e-06 54.3 81 37.0
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-06 53.9 81 38.3
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-06 53.9 81 38.3
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 8.5e-06 53.9 96 40.6


User provided reference genes

Program Settings