Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05537 Brassica carinata HOM05D004318 ORTHO05D019912 2.8e-58 228.4 115 100.0
C03p05030 Brassica napus HOM05D004318 ORTHO05D019912 4.6e-37 157.9 118 77.1
C03p05040 Brassica napus HOM05D004318 ORTHO05D019912 4.6e-37 157.9 118 77.1
A10p03880 Brassica napus HOM05D004318 ORTHO05D019912 1.8e-28 129.4 96 76.0
BolC5t29350H Brassica oleracea HOM05D004318 ORTHO05D019912 1.6e-13 79.7 46 95.7
BolC3t13033H Brassica oleracea HOM05D004318 ORTHO05D019912 1.0e-12 77.0 41 100.0
BraA10t42664Z Brassica rapa HOM05D004318 ORTHO05D019912 5.1e-12 74.7 41 97.6
Thhalv10000089m.g Eutrema salsugineum HOM05D004318 ORTHO05D005690 9.7e-11 70.5 42 88.1
BcaC02g08787 Brassica carinata HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
BcaC07g41147 Brassica carinata HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
A04p16180 Brassica napus HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
A09p58220 Brassica napus HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
C04p50650 Brassica napus HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
C08p41520 Brassica napus HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
BolC4t26661H Brassica oleracea HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
BolC8t51713H Brassica oleracea HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
BraA04t17257Z Brassica rapa HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
BraA09t41210Z Brassica rapa HOM05D004318 ORTHO05D005690 2.8e-10 68.9 42 85.7
AL4G10650 Arabidopsis lyrata HOM05D004318 ORTHO05D005690 3.7e-10 68.6 42 83.3
AT2G21470 Arabidopsis thaliana HOM05D004318 ORTHO05D005690 3.7e-10 68.6 42 83.3
Sp4g00630 Schrenkiella parvula HOM05D004318 ORTHO05D005690 3.7e-10 68.6 42 83.3
Carub.0004s0051 Capsella rubella HOM05D004318 ORTHO05D005690 6.3e-10 67.8 42 83.3
Manes.04G086600 Manihot esculenta HOM05D004318 ORTHO05D005690 6.3e-10 67.8 42 81.0
Aa31LG7G15060 Aethionema arabicum HOM05D004318 ORTHO05D005690 1.1e-09 67.0 42 81.0
Sabra04G0106100 Salix brachista HOM05D004318 ORTHO05D005690 1.1e-09 67.0 45 77.8
Manes.04G086800 Manihot esculenta HOM05D004318 ORTHO05D005690 1.8e-09 66.2 42 78.6
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 1.8e-09 66.2 55 60.0
Ciclev10028169m.g Citrus clementina HOM05D004318 ORTHO05D005690 2.4e-09 65.9 42 81.0
Potri.009G120200 Populus trichocarpa HOM05D004318 ORTHO05D005690 2.4e-09 65.9 42 83.3
Atru.chr5.3085 Acer truncatum HOM05D004318 ORTHO05D005690 3.1e-09 65.5 42 81.0
CARHR112390 Cardamine hirsuta HOM05D004318 ORTHO05D005690 3.1e-09 65.5 42 81.0
Potri.004G158900 Populus trichocarpa HOM05D004318 ORTHO05D005690 3.1e-09 65.5 42 81.0
Glyma.12G236000 Glycine max HOM05D004318 ORTHO05D005690 6.9e-09 64.3 45 71.1
Psat4g193920 Pisum sativum HOM05D004318 ORTHO05D005690 6.9e-09 64.3 40 80.0
Gohir.A12G042300 Gossypium hirsutum HOM05D004318 ORTHO05D005690 9.1e-09 63.9 42 78.6
Gohir.D12G030000 Gossypium hirsutum HOM05D004318 ORTHO05D005690 9.1e-09 63.9 42 78.6
Gorai.008G030900 Gossypium raimondii HOM05D004318 ORTHO05D005690 9.1e-09 63.9 42 78.6
THA.LOC104807752 Tarenaya hassleriana HOM05D004318 ORTHO05D005690 9.1e-09 63.9 42 78.6
Duzib052G0126 Durio zibethinus HOM05D004318 ORTHO05D005690 1.2e-08 63.5 42 78.6
Duzib132G0379 Durio zibethinus HOM05D004318 ORTHO05D005690 1.2e-08 63.5 42 78.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 1.2e-08 63.5 55 56.4
Hma1.2p1_0066F.1_g036090 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 1.5e-08 63.2 42 76.2
Lj3g0018181 Lotus japonicus HOM05D004318 ORTHO05D005690 1.5e-08 63.2 45 73.3
TWI31G0084 Tripterygium wilfordii HOM05D004318 ORTHO05D005690 1.5e-08 63.2 42 78.6
TWI79G1546 Tripterygium wilfordii HOM05D004318 ORTHO05D005690 1.5e-08 63.2 42 78.6
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 2.0e-08 62.8 56 55.4
Ca_23903_v3 Cicer arietinum L. HOM05D004318 ORTHO05D005690 2.0e-08 62.8 42 73.8
Hma1.2p1_0851F.1_g228380 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 2.0e-08 62.8 42 73.8
Hma1.2p1_2529F.1_g323970 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 2.0e-08 62.8 40 80.0
Medtr8g037355 Medicago truncatula HOM05D004318 ORTHO05D005690 2.0e-08 62.8 42 73.8
Nn7g37293 Nelumbo nucifera HOM05D004318 ORTHO05D005690 2.0e-08 62.8 45 71.1
TPR.G1833 Trifolium pratense HOM05D004318 ORTHO05D005690 2.0e-08 62.8 42 73.8
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 2.6e-08 62.4 64 50.0
Glyma.13G201500 Glycine max HOM05D004318 ORTHO05D005690 2.6e-08 62.4 45 68.9
Actinidia33407 Actinidia chinensis HOM05D004318 ORTHO05D005690 3.4e-08 62.0 45 66.7
Gohir.A03G197000 Gossypium hirsutum HOM05D004318 ORTHO05D005690 3.4e-08 62.0 42 76.2
Gohir.D02G218400 Gossypium hirsutum HOM05D004318 ORTHO05D005690 3.4e-08 62.0 42 76.2
Gorai.005G246300 Gossypium raimondii HOM05D004318 ORTHO05D005690 3.4e-08 62.0 42 76.2
Prupe.8G090100 Prunus persica HOM05D004318 ORTHO05D005690 3.4e-08 62.0 42 76.2
MSTRG.16828 Avicennia marina HOM05D004318 ORTHO05D005690 4.5e-08 61.6 42 73.8
Cpa.g.sc1026.1 Carica papaya HOM05D004318 ORTHO05D005690 4.5e-08 61.6 42 76.2
Lj9C377G29 Lonicera japonica HOM05D004318 ORTHO05D005690 4.5e-08 61.6 42 73.8
Lalb_Chr19g0132281 Lupinus albus HOM05D004318 ORTHO05D005690 4.5e-08 61.6 42 71.4
Oeu041617.2 Olea europaea HOM05D004318 ORTHO05D005690 4.5e-08 61.6 42 76.2
Peaxi162Scf00016g00424 Petunia axillaris HOM05D004318 ORTHO05D005690 4.5e-08 61.6 42 73.8
Sabra09G0092500 Salix brachista HOM05D004318 ORTHO05D005690 4.5e-08 61.6 36 91.7
TAR381G1154 Trochodendron aralioides HOM05D004318 ORTHO05D005690 4.5e-08 61.6 42 76.2
GSVIVG01023831001 Vitis vinifera HOM05D004318 ORTHO05D005690 4.5e-08 61.6 42 71.4
Actinidia02232 Actinidia chinensis HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 5.9e-08 61.2 58 56.9
CSS0003672 Camellia sinensis var. sinensis HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
CSS0008255 Camellia sinensis var. sinensis HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
CANSAT11G1266 Cannabis sativa HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
Cfa005060 Carpinus fangiana HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
CiPaw.05G070100 Carya illinoinensis HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
Cc02_g17210 Coffea canephora HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
Haze_02323 Corylus avellana HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
DCAR_003656 Daucus carota HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
Dinv23486 Davidia involucrata HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
Oeu061228.2 Olea europaea HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
QL11p045146 Quercus lobata HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
QL11p045270 Quercus lobata HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
Solyc01g109960.3 Solanum lycopersicum HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
Sopen01g052150 Solanum pennellii HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
PGSC0003DMG400030951 Solanum tuberosum HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
TAR625G1297 Trochodendron aralioides HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
vmacro02077 Vaccinium macrocarpon HOM05D004318 ORTHO05D005690 5.9e-08 61.2 42 73.8
Actinidia00553 Actinidia chinensis HOM05D004318 ORTHO05D005690 7.7e-08 60.8 40 77.5
Actinidia07486 Actinidia chinensis HOM05D004318 ORTHO05D005690 7.7e-08 60.8 42 71.4
Dinv42035 Davidia involucrata HOM05D004318 ORTHO05D005690 7.7e-08 60.8 42 73.8
Eucgr.G01699 Eucalyptus grandis HOM05D004318 ORTHO05D005690 7.7e-08 60.8 42 73.8
Lalb_Chr01g0007991 Lupinus albus HOM05D004318 ORTHO05D005690 7.7e-08 60.8 42 69.0
Rhsim11G0180700 Rhododendron simsii HOM05D004318 ORTHO05D005690 7.7e-08 60.8 42 73.8
Thecc.02G080000 Theobroma cacao HOM05D004318 ORTHO05D005690 7.7e-08 60.8 42 76.2
Aqoxy5G01543 Aquilegia oxysepala HOM05D004318 ORTHO05D005690 1.0e-07 60.5 42 73.8
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.0e-07 60.5 53 56.6
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 1.0e-07 60.5 53 56.6
Duzib248G1279 Durio zibethinus HOM05D004318 ORTHO05D005690 1.0e-07 60.5 42 73.8
MD05G1060400 Malus domestica HOM05D004318 ORTHO05D005690 1.0e-07 60.5 42 73.8
MD10G1068200 Malus domestica HOM05D004318 ORTHO05D005690 1.0e-07 60.5 42 73.8
Sc18g0005150 Simmondsia chinensis HOM05D004318 ORTHO05D005690 1.0e-07 60.5 42 73.8
Zm00001eb108060 Zea mays HOM05D004318 ORTHO05D005690 1.0e-07 60.5 42 73.8
CAN.G1544.10 Capsicum annuum HOM05D004318 ORTHO05D005690 1.3e-07 60.1 42 71.4
CsaV3_2G015050 Cucumis sativus L. HOM05D004318 ORTHO05D005690 1.3e-07 60.1 42 71.4
Lalb_Chr03g0032931 Lupinus albus HOM05D004318 ORTHO05D005690 1.3e-07 60.1 42 71.4
Nitab4.5_0003234g0050 Nicotiana tabacum HOM05D004318 ORTHO05D005690 1.3e-07 60.1 42 71.4
Nitab4.5_0005796g0010 Nicotiana tabacum HOM05D004318 ORTHO05D005690 1.3e-07 60.1 42 71.4
PGR042G0537 Punica granatum HOM05D004318 ORTHO05D005690 1.3e-07 60.1 42 71.4
Sed0003378 Sechium edule HOM05D004318 ORTHO05D005690 1.3e-07 60.1 42 71.4
SGA_v2.0_scaffold58G20499 Striga asiatica HOM05D004318 ORTHO05D005690 1.3e-07 60.1 42 71.4
arahy.Tifrunner.gnm1.ann1.2GC3QC Arachis hypogaea HOM05D004318 ORTHO05D005690 1.7e-07 59.7 42 69.0
arahy.Tifrunner.gnm1.ann1.7SB82T Arachis hypogaea HOM05D004318 ORTHO05D005690 1.7e-07 59.7 42 69.0
ClCG11G004120 Citrullus lanatus HOM05D004318 ORTHO05D005690 1.7e-07 59.7 40 75.0
MELO3C023325.2 Cucumis melo HOM05D004318 ORTHO05D005690 1.7e-07 59.7 42 69.0
Sed0019695 Sechium edule HOM05D004318 ORTHO05D005690 1.7e-07 59.7 42 71.4
unitig_21.g20793 Utricularia gibba HOM05D004318 ORTHO05D005690 1.7e-07 59.7 42 73.8
Zm00001eb325940 Zea mays HOM05D004318 ORTHO05D005690 1.7e-07 59.7 42 73.8
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 2.2e-07 59.3 55 58.2
AUR62011281 Chenopodium quinoa HOM05D004318 ORTHO05D005690 2.2e-07 59.3 38 78.9
AUR62016776 Chenopodium quinoa HOM05D004318 ORTHO05D005690 2.2e-07 59.3 38 78.9
MBI11_g32384_MAGBIO Magnolia biondii HOM05D004318 ORTHO05D005690 2.2e-07 59.3 42 73.8
Phvul.011G210500 Phaseolus vulgaris HOM05D004318 ORTHO05D005690 2.2e-07 59.3 38 76.3
SMO365G0074 Selaginella moellendorffii HOM05D004318 ORTHO05D005690 2.2e-07 59.3 38 73.7
TAR376G0887 Trochodendron aralioides HOM05D004318 ORTHO05D005690 2.2e-07 59.3 42 73.8
VMungo1127G0950 Vigna mungo HOM05D004318 ORTHO05D005690 2.2e-07 59.3 38 76.3
EL10Ac9g21687 Beta vulgaris HOM05D004318 ORTHO05D005690 2.9e-07 58.9 39 79.5
CDE05G2827 Ceratophyllum demersum HOM05D004318 ORTHO05D005690 2.9e-07 58.9 45 68.9
FAN24G3142 Fragaria x ananassa HOM05D004318 ORTHO05D005690 2.9e-07 58.9 42 69.0
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 3.8e-07 58.5 56 57.1
CiPaw.06G132400 Carya illinoinensis HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 71.4
Migut.B00206 Erythranthe guttata HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 66.7
FvH4_2g09750 Fragaria vesca HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 69.0
FAN15G3707 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 69.0
FAN20G2962 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 69.0
FAN24G0421 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 69.0
FAN27G0594 Fragaria x ananassa HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 69.0
Psat7g202400 Pisum sativum HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 66.7
RcHm_v2.0_Chr6g0266041 Rosa chinensis HOM05D004318 ORTHO05D005690 3.8e-07 58.5 42 69.0
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 5.0e-07 58.2 61 50.8
HPP92_011807 Vanilla planifolia HOM05D004318 ORTHO05D005690 5.0e-07 58.2 42 71.4
HPP92_011808 Vanilla planifolia HOM05D004318 ORTHO05D005690 5.0e-07 58.2 42 71.4
ECA236G2358 Erigeron canadensis HOM05D004318 ORTHO05D005690 6.5e-07 57.8 36 83.3
HanXRQChr16g0505381 Helianthus annuus HOM05D004318 ORTHO05D005690 6.5e-07 57.8 36 83.3
Lsat_1_v5_gn_7_91601 Lactuca sativa HOM05D004318 ORTHO05D005690 6.5e-07 57.8 36 83.3
Hund06250 Selenicereus undatus HOM05D004318 ORTHO05D005690 6.5e-07 57.8 36 86.1
AagrBONN_evm.TU.Sc2ySwM_368.2571 Anthoceros agrestis HOM05D004318 ORTHO05D005690 8.5e-07 57.4 41 65.9
SEGI_30924 Sequoiadendron giganteum HOM05D004318 ORTHO05D005690 8.5e-07 57.4 43 65.1
Mapoly0015s0126 Marchantia polymorpha HOM05D004318 ORTHO05D005690 1.4e-06 56.6 41 65.9
ATR0665G307 Amborella trichopoda HOM05D004318 ORTHO05D005690 1.9e-06 56.2 42 64.3
unitig_0.g58 Utricularia gibba HOM05D004318 ORTHO05D005690 1.9e-06 56.2 42 64.3
Ah.01g019090 Amaranthus hybridus HOM05D004318 ORTHO05D005690 2.5e-06 55.8 38 76.3
MCO12G085 Micromonas commoda HOM05D004318 ORTHO05D005690 2.5e-06 55.8 91 40.7
PSO731G0114 Papaver somniferum HOM05D004318 ORTHO05D005690 2.5e-06 55.8 36 80.6
PSO764G0293 Papaver somniferum HOM05D004318 ORTHO05D005690 2.5e-06 55.8 36 80.6
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 3.2e-06 55.5 53 54.7
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 3.2e-06 55.5 53 54.7
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 3.2e-06 55.5 53 54.7
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 4.2e-06 55.1 56 53.6
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 7.2e-06 54.3 40 67.5
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 7.2e-06 54.3 56 53.6
CBR_g4362 Chara braunii HOM05D004318 ORTHO05D005690 7.2e-06 54.3 41 63.4


User provided reference genes

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