Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05516 Brassica carinata HOM05D001303 ORTHO05D090486 2.3e-93 345.5 171 100.0
DCAR_000663 Daucus carota HOM05D001303 ORTHO05D001129 4.2e-10 68.9 49 65.3
Nitab4.5_0000213g0170 Nicotiana tabacum HOM05D001303 ORTHO05D001129 1.3e-08 63.9 49 61.2
Nitab4.5_0000398g0020 Nicotiana tabacum HOM05D001303 ORTHO05D001129 1.3e-08 63.9 49 61.2
Peaxi162Scf00078g00059 Petunia axillaris HOM05D001303 ORTHO05D001129 1.8e-08 63.5 49 61.2
Prupe.1G461600 Prunus persica HOM05D001303 ORTHO05D001129 1.8e-08 63.5 49 63.3
THA.LOC104799008 Tarenaya hassleriana HOM05D001303 ORTHO05D001129 1.8e-08 63.5 51 62.7
THA.LOC104803320 Tarenaya hassleriana HOM05D001303 ORTHO05D001129 1.8e-08 63.5 51 62.7
AL6G36530 Arabidopsis lyrata HOM05D001303 ORTHO05D001129 2.3e-08 63.2 51 62.7
AT5G24860 Arabidopsis thaliana HOM05D001303 ORTHO05D001129 2.3e-08 63.2 51 62.7
Carub.0006s2271 Capsella rubella HOM05D001303 ORTHO05D001129 2.3e-08 63.2 51 62.7
Eucgr.C04001 Eucalyptus grandis HOM05D001303 ORTHO05D001129 2.3e-08 63.2 49 65.3
BcaB01g06263 Brassica carinata HOM05D001303 ORTHO05D001129 3.0e-08 62.8 52 63.5
BolC9t59440H Brassica oleracea HOM05D001303 ORTHO05D001129 3.0e-08 62.8 52 61.5
Sp2g22590 Schrenkiella parvula HOM05D001303 ORTHO05D001129 3.0e-08 62.8 51 62.7
A06p35630 Brassica napus HOM05D001303 ORTHO05D001129 3.9e-08 62.4 51 58.8
A10p26960 Brassica napus HOM05D001303 ORTHO05D001129 3.9e-08 62.4 52 63.5
C09p66400 Brassica napus HOM05D001303 ORTHO05D001129 3.9e-08 62.4 52 63.5
C09p66480 Brassica napus HOM05D001303 ORTHO05D001129 3.9e-08 62.4 52 63.5
C09p66560 Brassica napus HOM05D001303 ORTHO05D001129 3.9e-08 62.4 52 63.5
C09p66650 Brassica napus HOM05D001303 ORTHO05D001129 3.9e-08 62.4 52 63.5
BolC9t59446H Brassica oleracea HOM05D001303 ORTHO05D001129 3.9e-08 62.4 52 63.5
BraA06t26488Z Brassica rapa HOM05D001303 ORTHO05D001129 3.9e-08 62.4 51 58.8
BraA10t44747Z Brassica rapa HOM05D001303 ORTHO05D001129 3.9e-08 62.4 52 63.5
CARHR188590 Cardamine hirsuta HOM05D001303 ORTHO05D001129 3.9e-08 62.4 51 62.7
MBI14_g17370_MAGBIO Magnolia biondii HOM05D001303 ORTHO05D001129 3.9e-08 62.4 49 55.1
BcaB08g37097 Brassica carinata HOM05D001303 ORTHO05D001129 5.1e-08 62.0 52 61.5
Actinidia40261 Actinidia chinensis HOM05D001303 ORTHO05D001129 6.7e-08 61.6 49 57.1
Thhalv10015065m.g Eutrema salsugineum HOM05D001303 ORTHO05D001129 6.7e-08 61.6 54 61.1
C07p42920 Brassica napus HOM05D001303 ORTHO05D001129 8.7e-08 61.2 51 58.8
BolC7t44821H Brassica oleracea HOM05D001303 ORTHO05D001129 8.7e-08 61.2 51 58.8
DCAR_004583 Daucus carota HOM05D001303 ORTHO05D001129 1.1e-07 60.8 102 40.2
Glyma.17G202100 Glycine max HOM05D001303 ORTHO05D001129 1.1e-07 60.8 57 57.9
Atru.chr4.2814 Acer truncatum HOM05D001303 ORTHO05D001129 1.5e-07 60.5 49 63.3
BcaB01g06264 Brassica carinata HOM05D001303 ORTHO05D001129 1.5e-07 60.5 52 61.5
C09p07100 Brassica napus HOM05D001303 ORTHO05D001129 1.5e-07 60.5 51 60.8
C09p66190 Brassica napus HOM05D001303 ORTHO05D001129 1.5e-07 60.5 93 44.1
MD08G1131700 Malus domestica HOM05D001303 ORTHO05D001129 1.5e-07 60.5 49 61.2
Medtr1g009900 Medicago truncatula HOM05D001303 ORTHO05D001129 1.5e-07 60.5 52 59.6
AL6G21160 Arabidopsis lyrata HOM05D001303 ORTHO05D001129 1.9e-07 60.1 54 57.4
ClCG08G012740 Citrullus lanatus HOM05D001303 ORTHO05D001129 1.9e-07 60.1 53 56.6
Dinv04643 Davidia involucrata HOM05D001303 ORTHO05D001129 1.9e-07 60.1 55 56.4
Thhalv10005622m.g Eutrema salsugineum HOM05D001303 ORTHO05D001129 1.9e-07 60.1 51 60.8
Lsat_1_v5_gn_5_52340 Lactuca sativa HOM05D001303 ORTHO05D001129 1.9e-07 60.1 51 60.8
THA.LOC104819930 Tarenaya hassleriana HOM05D001303 ORTHO05D001129 1.9e-07 60.1 63 50.8
EL10Ac4g09094 Beta vulgaris HOM05D001303 ORTHO05D001129 2.5e-07 59.7 51 58.8
CiPaw.07G214100 Carya illinoinensis HOM05D001303 ORTHO05D001129 2.5e-07 59.7 53 62.3
Ciclev10009959m.g Citrus clementina HOM05D001303 ORTHO05D001129 2.5e-07 59.7 52 61.5
Glyma.14G133300 Glycine max HOM05D001303 ORTHO05D001129 2.5e-07 59.7 56 57.1
Lalb_Chr13g0303651 Lupinus albus HOM05D001303 ORTHO05D001129 2.5e-07 59.7 54 59.3
MD13G1169600 Malus domestica HOM05D001303 ORTHO05D001129 2.5e-07 59.7 51 60.8
QL06p008698 Quercus lobata HOM05D001303 ORTHO05D001129 2.5e-07 59.7 50 52.0
BcaB01g05512 Brassica carinata HOM05D001303 ORTHO05D001129 3.3e-07 59.3 66 51.5
BcaB01g05515 Brassica carinata HOM05D001303 ORTHO05D001129 3.3e-07 59.3 66 51.5
C03p05370 Brassica napus HOM05D001303 ORTHO05D001129 3.3e-07 59.3 66 51.5
BolC3t13050H Brassica oleracea HOM05D001303 ORTHO05D001129 3.3e-07 59.3 66 51.5
Oeu029091.1 Olea europaea HOM05D001303 ORTHO05D001129 3.3e-07 59.3 56 57.1
Psat6g007880 Pisum sativum HOM05D001303 ORTHO05D001129 3.3e-07 59.3 53 56.6
Sp6g32820 Schrenkiella parvula HOM05D001303 ORTHO05D001129 3.3e-07 59.3 54 57.4
SGA_v2.0_scaffold118G32608 Striga asiatica HOM05D001303 ORTHO05D001129 3.3e-07 59.3 50 66.0
DCAR_004582 Daucus carota HOM05D001303 ORTHO05D001129 4.3e-07 58.9 102 37.3
HanXRQChr03g0080831 Helianthus annuus HOM05D001303 ORTHO05D001129 4.3e-07 58.9 51 62.7
Prupe.1G137800 Prunus persica HOM05D001303 ORTHO05D001129 4.3e-07 58.9 51 56.9
TAR626G1596 Trochodendron aralioides HOM05D001303 ORTHO05D001129 4.3e-07 58.9 49 61.2
CARHR202680 Cardamine hirsuta HOM05D001303 ORTHO05D001129 5.7e-07 58.5 56 58.9
CiPaw.02G083500 Carya illinoinensis HOM05D001303 ORTHO05D001129 5.7e-07 58.5 78 39.7
FvH4_2g30770 Fragaria vesca HOM05D001303 ORTHO05D001129 5.7e-07 58.5 50 64.0
FAN20G1034 Fragaria x ananassa HOM05D001303 ORTHO05D001129 5.7e-07 58.5 50 64.0
FAN24G3051 Fragaria x ananassa HOM05D001303 ORTHO05D001129 5.7e-07 58.5 50 64.0
FAN27G2848 Fragaria x ananassa HOM05D001303 ORTHO05D001129 5.7e-07 58.5 50 64.0
PGR044G0117 Punica granatum HOM05D001303 ORTHO05D001129 5.7e-07 58.5 51 58.8
Sed0016817 Sechium edule HOM05D001303 ORTHO05D001129 5.7e-07 58.5 53 54.7
PGSC0003DMG400011346 Solanum tuberosum HOM05D001303 ORTHO05D001129 7.4e-07 58.2 49 57.1
Atru.chr7.2625 Acer truncatum HOM05D001303 ORTHO05D001129 9.7e-07 57.8 49 55.1
AT5G10625 Arabidopsis thaliana HOM05D001303 ORTHO05D001129 9.7e-07 57.8 54 53.7
Carub.0006s0911 Capsella rubella HOM05D001303 ORTHO05D001129 9.7e-07 57.8 55 58.2
MELO3C011197.2 Cucumis melo HOM05D001303 ORTHO05D001129 9.7e-07 57.8 54 57.4
CsaV3_2G031470 Cucumis sativus L. HOM05D001303 ORTHO05D001129 9.7e-07 57.8 54 57.4
HanXRQChr03g0070781 Helianthus annuus HOM05D001303 ORTHO05D001129 9.7e-07 57.8 76 43.4
MD16G1169700 Malus domestica HOM05D001303 ORTHO05D001129 9.7e-07 57.8 48 60.4
Sabra18G0000100 Salix brachista HOM05D001303 ORTHO05D001129 9.7e-07 57.8 52 59.6
Sabra18G0010800 Salix brachista HOM05D001303 ORTHO05D001129 9.7e-07 57.8 52 59.6
Sc06g0001200 Simmondsia chinensis HOM05D001303 ORTHO05D001129 9.7e-07 57.8 62 54.8
AL8G22240 Arabidopsis lyrata HOM05D001303 ORTHO05D001129 1.3e-06 57.4 51 56.9
EL10Ac2g03725 Beta vulgaris HOM05D001303 ORTHO05D001129 1.3e-06 57.4 55 58.2
CSS0019625 Camellia sinensis var. sinensis HOM05D001303 ORTHO05D001129 1.3e-06 57.4 51 56.9
CSS0045985 Camellia sinensis var. sinensis HOM05D001303 ORTHO05D001129 1.3e-06 57.4 51 56.9
COL.COLO4_13884 Corchorus olitorius HOM05D001303 ORTHO05D001129 1.3e-06 57.4 52 55.8
MD15G1109300 Malus domestica HOM05D001303 ORTHO05D001129 1.3e-06 57.4 50 60.0
Nn3g21423 Nelumbo nucifera HOM05D001303 ORTHO05D001129 1.3e-06 57.4 57 54.4
Potri.006G276100 Populus trichocarpa HOM05D001303 ORTHO05D001129 1.3e-06 57.4 55 56.4
SGA_v2.0_scaffold67G22643 Striga asiatica HOM05D001303 ORTHO05D001129 1.3e-06 57.4 50 56.0
THA.LOC104827345 Tarenaya hassleriana HOM05D001303 ORTHO05D001129 1.3e-06 57.4 55 56.4
Zm00001eb142230 Zea mays HOM05D001303 ORTHO05D001129 1.3e-06 57.4 52 55.8
BcaB04g19803 Brassica carinata HOM05D001303 ORTHO05D001129 1.6e-06 57.0 94 41.5
BcaC04g23564 Brassica carinata HOM05D001303 ORTHO05D001129 1.6e-06 57.0 94 41.5
A09p06380 Brassica napus HOM05D001303 ORTHO05D001129 1.6e-06 57.0 94 41.5
C09p07070 Brassica napus HOM05D001303 ORTHO05D001129 1.6e-06 57.0 94 41.5
BolC9t53623H Brassica oleracea HOM05D001303 ORTHO05D001129 1.6e-06 57.0 94 41.5
BraA09t36283Z Brassica rapa HOM05D001303 ORTHO05D001129 1.6e-06 57.0 94 41.5
Ca_12875_v3 Cicer arietinum L. HOM05D001303 ORTHO05D001129 1.6e-06 57.0 51 56.9
Ciclev10006149m.g Citrus clementina HOM05D001303 ORTHO05D001129 1.6e-06 57.0 51 54.9
Eucgr.B01304 Eucalyptus grandis HOM05D001303 ORTHO05D001129 1.6e-06 57.0 51 58.8
Nn2g12768 Nelumbo nucifera HOM05D001303 ORTHO05D001129 1.6e-06 57.0 49 55.1
RcHm_v2.0_Chr4g0422041 Rosa chinensis HOM05D001303 ORTHO05D001129 1.6e-06 57.0 53 52.8
RcHm_v2.0_Chr6g0312131 Rosa chinensis HOM05D001303 ORTHO05D001129 1.6e-06 57.0 50 62.0
Sabra06G0213800 Salix brachista HOM05D001303 ORTHO05D001129 1.6e-06 57.0 55 56.4
Sopen01g028630 Solanum pennellii HOM05D001303 ORTHO05D001129 1.6e-06 57.0 50 58.0
TAR625G0597 Trochodendron aralioides HOM05D001303 ORTHO05D001129 1.6e-06 57.0 55 54.5
VMungo1309G2008 Vigna mungo HOM05D001303 ORTHO05D001129 1.6e-06 57.0 49 61.2
EL10Ac2g03727 Beta vulgaris HOM05D001303 ORTHO05D001129 2.2e-06 56.6 58 56.9
AUR62032077 Chenopodium quinoa HOM05D001303 ORTHO05D001129 2.2e-06 56.6 51 56.9
Gohir.D10G169900 Gossypium hirsutum HOM05D001303 ORTHO05D001129 2.2e-06 56.6 56 55.4
Gorai.011G189300 Gossypium raimondii HOM05D001303 ORTHO05D001129 2.2e-06 56.6 56 55.4
Oeu028108.1 Olea europaea HOM05D001303 ORTHO05D001129 2.2e-06 56.6 54 57.4
Potri.018G005200 Populus trichocarpa HOM05D001303 ORTHO05D001129 2.2e-06 56.6 55 56.4
THA.LOC104803593 Tarenaya hassleriana HOM05D001303 ORTHO05D001129 2.2e-06 56.6 65 49.2
THA.LOC104803877 Tarenaya hassleriana HOM05D001303 ORTHO05D001129 2.2e-06 56.6 64 45.3
Cpa.g.sc1312.1 Carica papaya HOM05D001303 ORTHO05D001129 2.8e-06 56.2 50 62.0
Lsat_1_v5_gn_9_43641 Lactuca sativa HOM05D001303 ORTHO05D001129 2.8e-06 56.2 52 55.8
Solyc01g066980.3 Solanum lycopersicum HOM05D001303 ORTHO05D001129 2.8e-06 56.2 49 55.1
Sopen01g028640 Solanum pennellii HOM05D001303 ORTHO05D001129 2.8e-06 56.2 49 55.1
CARHR293690 Cardamine hirsuta HOM05D001303 ORTHO05D001129 3.7e-06 55.8 51 54.9
Psat4g027240 Pisum sativum HOM05D001303 ORTHO05D001129 3.7e-06 55.8 51 54.9
Lsat_1_v5_gn_5_53461 Lactuca sativa HOM05D001303 ORTHO05D001129 4.8e-06 55.5 92 41.3
Lalb_Chr22g0361271 Lupinus albus HOM05D001303 ORTHO05D001129 4.8e-06 55.5 58 50.0
Manes.16G136500 Manihot esculenta HOM05D001303 ORTHO05D001129 4.8e-06 55.5 50 56.0
Nn4g25886 Nelumbo nucifera HOM05D001303 ORTHO05D001129 4.8e-06 55.5 100 41.0
Potri.008G209300 Populus trichocarpa HOM05D001303 ORTHO05D001129 4.8e-06 55.5 56 55.4
Actinidia01467 Actinidia chinensis HOM05D001303 ORTHO05D001129 6.3e-06 55.1 47 51.1
EL10Ac4g09095 Beta vulgaris HOM05D001303 ORTHO05D001129 6.3e-06 55.1 51 52.9
Gohir.A10G163500 Gossypium hirsutum HOM05D001303 ORTHO05D001129 6.3e-06 55.1 56 53.6
Oeu006622.1 Olea europaea HOM05D001303 ORTHO05D001129 6.3e-06 55.1 53 54.7
SMO139G0119 Selaginella moellendorffii HOM05D001303 ORTHO05D001129 6.3e-06 55.1 57 49.1
AUR62020620 Chenopodium quinoa HOM05D001303 ORTHO05D001129 8.2e-06 54.7 55 54.5
DCAR_004580 Daucus carota HOM05D001303 ORTHO05D001129 8.2e-06 54.7 50 62.0
Dinv29768 Davidia involucrata HOM05D001303 ORTHO05D001129 8.2e-06 54.7 46 58.7
Lj5g0002357 Lotus japonicus HOM05D001303 ORTHO05D001129 8.2e-06 54.7 55 54.5
LjContig00272g0007044 Lotus japonicus HOM05D001303 ORTHO05D001129 8.2e-06 54.7 49 57.1
Manes.15G013100 Manihot esculenta HOM05D001303 ORTHO05D001129 8.2e-06 54.7 56 55.4
Peaxi162Scf00534g00005 Petunia axillaris HOM05D001303 ORTHO05D001129 8.2e-06 54.7 50 54.0
Peaxi162Scf00534g00012 Petunia axillaris HOM05D001303 ORTHO05D001129 8.2e-06 54.7 50 54.0
SMO117G0148 Selaginella moellendorffii HOM05D001303 ORTHO05D001129 8.2e-06 54.7 56 48.2


User provided reference genes

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