Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 6.8e-176 620.5 312 100.0
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 1.7e-174 615.9 312 99.0
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 6.4e-174 614.0 312 99.0
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 5.4e-173 610.9 312 98.1
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 7.6e-167 590.5 312 95.2
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 1.4e-165 586.3 293 100.0
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 6.4e-158 560.8 313 88.8
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 2.4e-144 515.8 304 83.9
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 4.5e-143 511.5 320 82.5
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 1.6e-140 503.1 312 81.7
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 7.9e-140 500.7 318 78.3
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 1.3e-139 500.0 313 80.2
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 3.9e-139 498.4 311 78.5
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 1.0e-123 447.2 312 73.7
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 6.7e-123 444.5 311 70.7
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 1.5e-122 443.4 311 70.4
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 3.3e-122 442.2 316 69.9
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 7.4e-122 441.0 319 67.7
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 2.8e-121 439.1 311 70.4
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 1.4e-120 436.8 317 68.5
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 3.1e-120 435.6 317 68.8
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 5.3e-120 434.9 315 68.6
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 1.5e-119 433.3 315 67.0
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 3.4e-119 432.2 316 68.7
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.1e-117 427.2 305 69.8
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 1.4e-117 426.8 311 67.8
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 2.5e-117 426.0 310 69.4
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 2.5e-117 426.0 310 70.0
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 7.2e-117 424.5 311 68.8
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 9.4e-117 424.1 315 65.7
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 9.4e-117 424.1 301 70.4
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 3.9e-115 418.7 311 67.2
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 8.8e-115 417.5 303 69.6
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 2.0e-114 416.4 311 66.9
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 2.6e-114 416.0 313 67.4
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 2.6e-114 416.0 312 67.0
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 2.2e-113 412.9 317 66.6
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 2.2e-113 412.9 317 65.6
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 2.8e-113 412.5 307 67.4
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 2.8e-113 412.5 299 70.2
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 2.8e-113 412.5 317 65.9
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 3.7e-113 412.1 307 67.1
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 3.7e-113 412.1 313 65.8
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 4.8e-113 411.8 310 66.8
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 8.2e-113 411.0 313 65.8
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 9.1e-112 407.5 315 64.8
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 1.5e-111 406.8 307 66.4
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 2.0e-111 406.4 315 67.6
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 3.4e-111 405.6 316 63.9
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 4.5e-111 405.2 317 65.3
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 5.9e-111 404.8 304 64.1
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 5.9e-111 404.8 315 64.4
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 7.7e-111 404.4 309 66.7
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 8.5e-110 401.0 303 66.3
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 8.5e-110 401.0 303 66.3
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 8.5e-110 401.0 303 66.3
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 1.4e-109 400.2 318 65.4
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 1.4e-109 400.2 314 64.3
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 1.4e-109 400.2 317 64.0
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 1.9e-109 399.8 315 62.9
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 2.5e-109 399.4 317 64.0
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 3.2e-109 399.1 319 62.7
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 4.2e-109 398.7 314 62.7
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 1.2e-108 397.1 323 63.2
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 1.2e-108 397.1 306 66.0
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 2.1e-108 396.4 302 64.2
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 4.7e-108 395.2 302 63.9
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 1.8e-107 393.3 308 65.6
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 6.7e-107 391.3 313 62.3
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 6.7e-107 391.3 296 67.6
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 2.8e-105 386.0 300 66.3
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 7.0e-104 381.3 292 66.4
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 5.0e-102 375.2 311 64.0
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 1.5e-101 373.6 264 71.2
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 1.9e-101 373.2 316 58.5
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 3.2e-101 372.5 310 62.6
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 5.5e-101 371.7 300 64.7
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 7.2e-101 371.3 312 60.9
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 2.1e-100 369.8 276 66.7
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 4.7e-100 368.6 316 61.4
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 1.0e-99 367.5 313 59.4
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.0e-99 367.5 313 57.5
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 1.4e-99 367.1 299 60.2
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 1.8e-99 366.7 310 61.9
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 2.0e-98 363.2 314 60.5
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 7.5e-98 361.3 328 55.2
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 1.3e-97 360.5 309 58.3
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 1.7e-97 360.1 318 59.7
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 4.8e-97 358.6 310 61.3
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 2.4e-96 356.3 404 49.8
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 2.7e-95 352.8 310 60.6
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 1.3e-94 350.5 242 71.5
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 5.5e-93 345.1 315 57.8
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.2e-90 337.4 282 62.8
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 3.4e-90 335.9 310 57.4
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 7.0e-88 328.2 238 68.9
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 7.0e-88 328.2 312 56.4
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 1.5e-85 320.5 265 60.8
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.8e-83 313.5 283 59.7
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 7.8e-79 298.1 313 53.4
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 4.1e-72 275.8 226 65.0
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 3.0e-70 269.6 190 69.5
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 6.4e-49 198.7 303 40.9
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 2.3e-46 190.3 233 49.4
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 2.1e-44 183.7 302 37.4
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 3.6e-44 183.0 291 36.1
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 6.2e-44 182.2 294 38.1
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 5.8e-42 175.6 301 35.2
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.3e-38 164.5 308 32.5
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.7e-38 164.1 140 58.6
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 7.6e-34 148.7 234 41.5
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 4.3e-29 132.9 238 39.5
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 9.6e-29 131.7 182 41.2
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 1.9e-24 117.5 137 46.7
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 1.4e-19 101.3 72 62.5
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 4.2e-16 89.7 231 32.5


User provided reference genes

Program Settings