Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 1.6e-21 105.1 52 100.0
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 1.6e-21 105.1 52 100.0
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 1.6e-21 105.1 52 100.0
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 1.6e-21 105.1 52 100.0
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 1.0e-20 102.4 52 98.1
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 1.4e-20 102.1 52 96.2
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 4.0e-20 100.5 52 94.2
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 6.7e-20 99.8 52 94.2
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 1.8e-17 91.7 52 90.4
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 1.8e-17 91.7 52 90.4
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 1.0e-15 85.9 52 84.6
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 2.7e-13 77.8 52 78.8
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.2e-11 72.4 53 73.6
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.2e-11 72.4 53 73.6
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 2.0e-11 71.6 52 67.3
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 2.6e-11 71.2 52 69.2
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 1.7e-10 68.6 53 71.7
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 2.2e-10 68.2 53 69.8
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 2.8e-10 67.8 53 69.8
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 3.7e-10 67.4 46 69.6
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 4.8e-10 67.0 54 66.7
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 6.3e-10 66.6 46 67.4
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 6.3e-10 66.6 54 63.0
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 1.4e-09 65.5 52 63.5
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.4e-09 64.7 53 66.0
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 5.4e-09 63.5 53 64.2
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 7.0e-09 63.2 53 64.2
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 1.2e-08 62.4 46 63.0
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 4.5e-08 60.5 40 65.0
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 4.5e-08 60.5 46 65.2
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.0e-07 59.3 54 57.4
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 1.3e-07 58.9 39 66.7
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 1.7e-07 58.5 44 65.9
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 2.2e-07 58.2 46 65.2
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.2e-07 58.2 54 57.4
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 2.2e-07 58.2 53 60.4
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 2.2e-07 58.2 49 59.2
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 2.9e-07 57.8 49 55.1
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 2.9e-07 57.8 43 60.5
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 3.8e-07 57.4 50 54.0
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 5.0e-07 57.0 44 65.9
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 5.0e-07 57.0 54 55.6
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 5.0e-07 57.0 44 63.6
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 5.0e-07 57.0 45 60.0
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 8.5e-07 56.2 45 60.0
Thhalv10005256m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 1.5e-06 55.5 36 72.2
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 1.5e-06 55.5 39 66.7
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 1.9e-06 55.1 54 57.4
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 1.9e-06 55.1 52 53.8
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 1.9e-06 55.1 45 55.6
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 2.5e-06 54.7 43 62.8
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 4.2e-06 53.9 54 55.6
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 5.5e-06 53.5 48 58.3
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 5.5e-06 53.5 45 55.6
C07p42800 Brassica napus HOM05D007824 ORTHO05D009875 7.2e-06 53.1 36 72.2
BolC7t44808H Brassica oleracea HOM05D061710 ORTHO05D009875 7.2e-06 53.1 36 72.2
BraA06t26498Z Brassica rapa HOM05D007824 ORTHO05D009875 7.2e-06 53.1 36 72.2


User provided reference genes

Program Settings