Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.6e-100 367.9 181 100.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 6.7e-99 364.0 181 98.3
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.1e-98 363.2 181 97.8
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 7.4e-98 360.5 181 96.7
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.3e-97 359.8 181 96.1
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-97 358.6 182 97.8
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.4e-96 356.3 182 96.7
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-96 356.3 182 96.7
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-96 356.3 182 96.7
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 2.4e-96 355.5 182 97.3
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 4.0e-96 354.8 182 96.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 4.0e-96 354.8 181 95.0
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 6.9e-96 354.0 174 99.4
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 9.0e-96 353.6 181 95.0
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.5e-95 352.8 181 93.4
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 2.0e-95 352.4 181 94.5
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 2.0e-95 352.4 181 94.5
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.0e-94 350.1 181 94.5
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.9e-93 345.9 181 91.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 6.7e-91 337.4 168 98.8
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.8e-89 332.0 169 97.6
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 84.0
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 83.4
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.6e-84 316.2 181 84.0
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.6e-84 316.2 176 85.2
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.1e-84 315.8 177 84.7
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 2.7e-84 315.5 175 86.3
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 3.6e-84 315.1 176 85.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.6e-84 315.1 176 84.7
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 3.6e-84 315.1 176 84.7
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 6.1e-84 314.3 176 85.8
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 6.1e-84 314.3 176 85.8
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.0e-83 313.5 176 85.2
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.8e-83 312.8 181 82.9
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.8e-83 312.8 176 85.2
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 3.0e-83 312.0 181 81.8
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 8.8e-83 310.5 181 82.3
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 8.8e-83 310.5 176 83.5
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 2.0e-82 309.3 181 81.8
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 3.3e-82 308.5 178 82.0
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 9.7e-82 307.0 181 80.7
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.7e-81 306.2 176 82.4
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 82.3
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 81.2
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 3.7e-81 305.1 181 80.1
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 6.3e-81 304.3 176 83.0
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 6.3e-81 304.3 176 84.1
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.1e-80 303.5 176 83.0
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-80 303.1 177 82.5
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.4e-80 303.1 177 81.9
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 81.2
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.8e-80 302.8 177 82.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.8e-80 302.8 169 85.2
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 2.4e-80 302.4 177 83.1
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.4e-80 302.4 181 81.2
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 81.8
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 81.8
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.1e-80 301.6 177 83.1
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.3e-80 301.2 181 79.0
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 79.0
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 6.9e-80 300.8 177 82.5
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 6.9e-80 300.8 177 82.5
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 9.1e-80 300.4 181 79.0
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 9.1e-80 300.4 182 79.7
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.2e-79 300.1 176 81.8
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.2e-79 300.1 173 82.7
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.5e-79 299.7 181 80.1
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.0e-79 299.3 180 81.7
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.0e-79 299.3 181 78.5
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 2.0e-79 299.3 181 79.0
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 4.5e-79 298.1 182 81.3
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.9e-79 297.7 177 81.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.0e-78 297.0 181 79.0
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.0e-78 297.0 181 79.0
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.0e-78 297.0 177 80.2
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.3e-78 296.6 166 84.9
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.2e-78 295.8 179 79.9
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 5.0e-78 294.7 176 81.2
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.0e-78 294.7 181 77.9
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 5.0e-78 294.7 177 82.5
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 5.0e-78 294.7 180 80.6
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 6.5e-78 294.3 181 78.5
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 6.5e-78 294.3 181 78.5
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 81.9
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.5e-77 292.4 170 83.5
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 2.5e-77 292.4 175 80.0
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 3.2e-77 292.0 178 78.1
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 4.2e-77 291.6 181 77.9
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 4.2e-77 291.6 181 78.5
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 7.2e-77 290.8 180 79.4
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 7.2e-77 290.8 168 83.3
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.2e-76 290.0 170 80.0
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.2e-76 290.0 177 78.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.6e-76 289.7 183 76.0
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.6e-76 289.7 177 81.4
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 4.7e-76 288.1 176 77.8
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 6.1e-76 287.7 177 80.8
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 6.1e-76 287.7 170 79.4
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.8e-75 286.2 181 75.1
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 2.3e-75 285.8 198 73.2
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.0e-75 285.4 181 76.2
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.0e-75 285.4 179 78.8
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 3.9e-75 285.0 174 78.7
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.9e-75 285.0 174 78.7
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 3.9e-75 285.0 179 78.2
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.1e-74 283.5 168 81.0
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.5e-74 283.1 176 76.7
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.5e-74 283.1 176 76.7
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.0e-74 282.7 178 78.1
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 3.3e-74 282.0 200 71.0
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 4.4e-74 281.6 168 78.6
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.7e-73 278.5 175 77.1
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 8.2e-73 277.3 176 77.3
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 5.3e-72 274.6 183 75.4
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 5.3e-72 274.6 183 75.4
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.5e-71 273.1 176 76.7
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.5e-71 273.1 168 78.6
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 4.5e-71 271.6 168 79.8
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-70 269.2 161 80.1
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.1e-69 266.9 179 73.7
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.2e-69 265.4 181 74.6
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 8.0e-68 260.8 181 72.4
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.4e-67 260.0 181 71.8
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 2.3e-67 259.2 168 72.0
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 8.8e-67 257.3 182 69.8
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 2.2e-65 252.7 176 70.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 7.0e-64 247.7 253 54.5
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 9.1e-64 247.3 150 79.3
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 3.5e-63 245.4 165 69.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 8.0e-60 234.2 176 63.6
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 8.0e-60 234.2 166 66.3
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 8.8e-59 230.7 148 75.7
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.5e-58 229.9 166 65.7
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 3.7e-57 225.3 135 85.2
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 8.3e-57 224.2 181 65.2
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 9.8e-50 200.7 170 55.9
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.1e-40 170.6 172 54.1
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 4.5e-39 165.2 100 82.0
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.5e-34 150.2 116 67.2
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 4.4e-34 148.7 173 43.4
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.5e-34 147.9 102 72.5
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.0e-30 136.0 79 81.0
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 5.0e-30 135.2 176 39.8
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 6.4e-25 118.2 75 77.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 6.4e-25 118.2 75 77.3
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.8e-23 111.3 64 79.7
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 1.1e-21 107.5 209 39.2
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.6e-21 105.1 52 94.2
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.2e-20 104.0 57 80.7
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.2e-20 104.0 165 35.2
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 8.9e-19 97.8 100 51.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.2e-18 97.4 62 75.8
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.2e-17 93.2 143 39.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 5.4e-16 88.6 55 72.7
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-13 80.9 41 90.2
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 1.1e-13 80.9 41 90.2
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 9.6e-13 77.8 90 46.7
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.0e-11 72.4 37 89.2
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-10 70.9 88 46.6
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 2.6e-10 69.7 51 66.7
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 3.4e-10 69.3 45 68.9
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 5.8e-10 68.6 43 79.1
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 3.8e-09 65.9 38 81.6
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.4e-08 63.9 42 73.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 5.4e-08 62.0 50 60.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.2e-07 60.8 55 58.2
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.0e-06 57.8 42 61.9


User provided reference genes

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