Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.7e-80 302.8 168 100.0
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 3.8e-80 301.6 168 99.4
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 7.1e-79 297.4 168 98.2
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 9.6e-76 287.0 171 94.7
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 2.1e-70 269.2 171 88.9
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.7e-56 223.0 171 78.4
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 5.5e-55 218.0 172 71.5
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 5.1e-53 211.5 174 75.3
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 5.1e-53 211.5 168 72.6
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-52 210.3 168 72.0
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-52 210.3 168 72.0
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.6e-49 199.1 176 72.7
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 7.7e-49 197.6 177 71.8
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 8.5e-48 194.1 176 73.9
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.4e-45 186.8 173 72.3
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.8e-43 179.1 174 70.7
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-42 176.8 173 69.9
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 1.4e-42 176.8 173 69.9
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 9.1e-42 174.1 172 65.7
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 5.9e-41 171.4 179 68.2
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 6.5e-40 167.9 159 66.7
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 7.5e-36 154.5 159 66.7
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 3.8e-32 142.1 169 53.8
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 6.5e-32 141.4 184 53.8
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.7e-27 126.7 168 50.0
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 4.1e-26 122.1 180 47.2
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-25 120.6 169 48.5
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.2e-25 120.6 169 48.5
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 3.5e-25 119.0 152 49.3
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-24 117.5 169 49.1
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.0e-24 117.5 169 49.1
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.0e-24 117.5 166 46.4
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 8.5e-24 114.4 181 47.5
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.1e-23 114.0 184 47.3
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 7.2e-23 111.3 158 46.2
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.2e-22 110.5 165 46.1
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 6.1e-22 108.2 183 43.7
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 4.0e-21 105.5 167 43.7
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 5.2e-21 105.1 167 45.5
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 5.2e-21 105.1 167 45.5
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.3e-19 100.5 175 42.3
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 3.7e-19 99.0 155 44.5
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 9.2e-18 94.4 174 43.7
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 4.5e-17 92.0 173 39.3
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-15 87.0 169 37.9
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 2.5e-15 86.3 98 60.2
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-15 86.3 152 37.5
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 5.6e-15 85.1 192 38.0
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 7.3e-15 84.7 201 35.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 7.3e-15 84.7 198 37.9
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 1.2e-14 84.0 204 35.3
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-14 84.0 183 36.1
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-14 84.0 145 37.9
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-14 84.0 184 37.0
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-14 84.0 183 35.0
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.2e-14 84.0 196 33.7
BraA03t09836Z Brassica rapa HOM05D002580 ORTHO05D002811 1.6e-14 83.6 59 83.1
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-14 83.2 158 35.4
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.6e-14 82.4 178 34.8
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.7e-14 82.0 182 33.5
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.7e-14 82.0 191 34.0
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 4.7e-14 82.0 143 38.5
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.1e-14 81.6 158 35.4
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.1e-14 81.6 205 35.1
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 6.1e-14 81.6 191 35.1
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 6.1e-14 81.6 194 37.1
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.0e-14 81.3 185 34.1
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-13 80.5 117 46.2
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.4e-13 80.5 117 46.2
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.4e-13 80.5 169 36.7
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 1.4e-13 80.5 113 47.8
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.8e-13 80.1 116 44.8
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-13 80.1 185 33.5
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 3.0e-13 79.3 204 31.9
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-13 79.3 182 33.0
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 4.0e-13 79.0 176 34.1
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 5.2e-13 78.6 117 47.0
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 5.2e-13 78.6 94 48.9
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 5.2e-13 78.6 189 35.4
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.8e-13 78.2 206 34.0
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 8.9e-13 77.8 113 45.1
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 8.9e-13 77.8 83 51.8
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-12 77.4 112 44.6
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-12 77.4 198 35.4
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.2e-12 77.4 195 33.3
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.5e-12 77.0 198 35.4
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.5e-12 77.0 198 35.4
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.0e-12 76.6 175 33.7
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.0e-12 76.6 165 35.8
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 2.0e-12 76.6 181 34.8
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 2.6e-12 76.3 141 40.4
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 2.6e-12 76.3 141 40.4
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 2.6e-12 76.3 103 46.6
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 2.6e-12 76.3 120 40.0
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 2.6e-12 76.3 202 33.7
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 3.4e-12 75.9 172 35.5
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.7e-12 75.1 198 34.8
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 5.7e-12 75.1 173 34.7
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 5.7e-12 75.1 81 53.1
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 7.5e-12 74.7 103 45.6
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 7.5e-12 74.7 186 31.7
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 9.8e-12 74.3 103 44.7
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.3e-11 73.9 204 32.4
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 1.7e-11 73.6 167 31.1
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 2.2e-11 73.2 177 32.8
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 2.9e-11 72.8 103 44.7
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.7e-11 72.4 105 45.7
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 6.4e-11 71.6 174 33.9
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.1e-10 70.9 166 33.7
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.8e-10 70.1 176 35.2
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 3.2e-10 69.3 187 36.4
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 3.2e-10 69.3 97 42.3
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 4.1e-10 68.9 172 34.3
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 4.1e-10 68.9 151 34.4
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 9.2e-10 67.8 175 36.0
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 9.2e-10 67.8 154 33.8
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 9.2e-10 67.8 152 35.5
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 9.2e-10 67.8 162 37.7
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 9.2e-10 67.8 79 43.0
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-09 67.4 131 35.1
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-09 67.4 131 35.1
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.2e-09 67.4 105 37.1
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.6e-09 67.0 105 37.1
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 2.0e-09 66.6 171 36.3
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 3.5e-09 65.9 89 46.1
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 3.5e-09 65.9 84 44.0
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 4.6e-09 65.5 90 43.3
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 5.9e-09 65.1 154 32.5
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 5.9e-09 65.1 192 31.2
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 5.9e-09 65.1 192 31.2
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 7.8e-09 64.7 154 32.5
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 7.8e-09 64.7 81 50.6
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.0e-08 64.3 70 48.6
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-08 63.9 54 63.0
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 1.7e-08 63.5 155 32.3
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 2.3e-08 63.2 209 30.1
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 3.9e-08 62.4 141 33.3
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 3.9e-08 62.4 83 45.8
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 5.0e-08 62.0 109 36.7
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 5.0e-08 62.0 88 39.8
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 6.6e-08 61.6 118 37.3
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.1e-07 60.8 69 46.4
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-07 60.5 63 47.6
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-07 60.5 63 47.6
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 1.9e-07 60.1 196 32.1
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 2.5e-07 59.7 64 43.8
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 3.3e-07 59.3 79 39.2
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 3.3e-07 59.3 88 37.5
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 4.3e-07 58.9 167 31.1
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 9.5e-07 57.8 80 41.2
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 3.6e-06 55.8 164 31.7
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 4.7e-06 55.5 122 34.4
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 4.7e-06 55.5 136 30.9
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 6.2e-06 55.1 92 41.3
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 6.2e-06 55.1 135 33.3
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 6.2e-06 55.1 70 45.7


User provided reference genes

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