Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 3.3e-59 231.5 115 100.0
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 3.3e-59 231.5 115 100.0
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 2.1e-58 228.8 115 99.1
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 9.0e-49 196.8 107 91.6
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 9.0e-49 196.8 107 91.6
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 1.2e-48 196.4 101 94.1
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-48 196.1 107 90.7
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 2.0e-48 195.7 107 90.7
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 3.4e-48 194.9 107 89.7
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 5.8e-48 194.1 107 90.7
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 3.8e-47 191.4 107 88.8
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 3.8e-47 191.4 107 88.8
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 3.8e-47 191.4 101 92.1
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 1.9e-46 189.1 107 87.9
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 4.2e-46 188.0 107 87.9
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 1.6e-45 186.0 107 86.9
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 2.1e-45 185.7 107 86.9
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 7.9e-45 183.7 127 76.4
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 2.3e-44 182.2 107 80.4
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 1.9e-43 179.1 107 81.3
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 3.3e-43 178.3 133 72.2
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 4.3e-43 177.9 122 77.0
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 1.6e-42 176.0 103 79.6
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 2.1e-42 175.6 103 80.6
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 2.1e-42 175.6 122 76.2
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 2.1e-42 175.6 101 81.2
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 3.6e-42 174.9 103 78.6
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 3.6e-42 174.9 101 81.2
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 4.8e-42 174.5 101 80.2
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 6.2e-42 174.1 104 76.9
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 6.2e-42 174.1 103 80.6
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 6.2e-42 174.1 101 81.2
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 6.2e-42 174.1 103 79.6
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 6.2e-42 174.1 101 81.2
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 6.2e-42 174.1 101 81.2
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 8.1e-42 173.7 107 77.6
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 8.1e-42 173.7 104 78.8
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.1e-41 173.3 107 79.4
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 3.1e-41 171.8 101 78.2
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 4.0e-41 171.4 103 77.7
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 5.3e-41 171.0 101 81.2
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.3e-41 171.0 107 77.6
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 5.3e-41 171.0 107 77.6
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 6.9e-41 170.6 104 76.0
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 9.0e-41 170.2 103 76.7
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.2e-40 169.9 103 77.7
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 1.2e-40 169.9 103 76.7
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.2e-40 169.9 101 76.2
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.2e-40 169.9 101 76.2
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 1.5e-40 169.5 107 75.7
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 1.5e-40 169.5 107 75.7
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 1.5e-40 169.5 104 79.8
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 1.5e-40 169.5 101 79.2
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 2.0e-40 169.1 103 76.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 3.4e-40 168.3 101 77.2
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 3.4e-40 168.3 103 76.7
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.5e-40 167.9 101 75.2
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.5e-40 167.9 104 78.8
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 5.8e-40 167.5 101 79.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 7.6e-40 167.2 107 74.8
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 9.9e-40 166.8 101 78.2
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 1.3e-39 166.4 107 73.8
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 2.9e-39 165.2 101 77.2
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 3.8e-39 164.9 109 71.6
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 3.8e-39 164.9 103 75.7
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.8e-39 164.9 103 73.8
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 4.9e-39 164.5 109 72.5
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 8.4e-39 163.7 100 78.0
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 8.4e-39 163.7 101 77.2
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.9e-38 162.5 101 77.2
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 2.4e-38 162.2 103 75.7
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 2.4e-38 162.2 105 72.4
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.4e-38 162.2 109 70.6
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 2.4e-38 162.2 101 76.2
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 3.2e-38 161.8 105 72.4
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 3.2e-38 161.8 104 75.0
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 3.2e-38 161.8 107 73.8
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 3.2e-38 161.8 109 71.6
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.5e-38 161.0 107 72.0
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.5e-38 161.0 107 72.0
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 5.5e-38 161.0 107 72.0
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 7.1e-38 160.6 101 73.3
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 7.1e-38 160.6 103 74.8
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 9.3e-38 160.2 103 72.8
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 9.3e-38 160.2 101 72.3
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.2e-37 159.8 109 69.7
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 1.2e-37 159.8 101 76.2
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 1.6e-37 159.5 107 70.1
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.1e-37 159.1 109 68.8
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 2.1e-37 159.1 107 72.9
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 2.7e-37 158.7 101 74.3
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 3.5e-37 158.3 107 72.0
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 6.0e-37 157.5 102 69.6
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 6.0e-37 157.5 101 72.3
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 6.0e-37 157.5 106 68.9
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 6.0e-37 157.5 101 74.3
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.0e-36 156.8 101 73.3
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.0e-36 156.8 102 71.6
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 3.9e-36 154.8 91 76.9
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 5.1e-36 154.5 101 72.3
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 6.7e-36 154.1 91 75.8
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 6.7e-36 154.1 107 71.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 6.7e-36 154.1 112 69.6
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 8.7e-36 153.7 104 68.3
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 1.1e-35 153.3 101 71.3
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 1.9e-35 152.5 105 72.4
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 3.3e-35 151.8 106 67.0
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 3.3e-35 151.8 102 69.6
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 4.3e-35 151.4 104 68.3
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 5.6e-35 151.0 130 62.3
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 7.4e-35 150.6 101 70.3
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 7.4e-35 150.6 101 70.3
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 9.6e-35 150.2 106 66.0
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 9.6e-35 150.2 101 71.3
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.3e-34 149.8 104 67.3
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 1.6e-34 149.4 104 64.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 2.1e-34 149.1 101 70.3
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 2.1e-34 149.1 101 69.3
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 3.7e-34 148.3 104 69.2
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 6.2e-34 147.5 125 61.6
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 8.1e-34 147.1 106 66.0
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 1.4e-33 146.4 90 77.8
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 3.1e-33 145.2 104 68.3
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 5.8e-32 141.0 104 60.6
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 8.4e-31 137.1 104 58.7
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 2.1e-29 132.5 106 57.5
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.8e-28 129.4 106 56.6
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 7.4e-27 124.0 107 61.7
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 9.0e-25 117.1 105 57.1
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 3.2e-22 108.6 63 81.0
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 9.3e-22 107.1 104 54.8
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 9.3e-22 107.1 104 54.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.1e-21 105.9 68 73.5
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 1.3e-20 103.2 88 53.4
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-17 92.8 101 45.5
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 2.0e-16 89.4 146 41.1
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.9e-15 85.5 65 67.7
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 8.5e-15 84.0 107 51.4
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 3.2e-14 82.0 56 62.5
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 7.2e-14 80.9 59 66.1
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 2.5e-11 72.4 38 86.8
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 3.4e-08 62.0 50 64.0
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.1e-06 57.0 92 32.6


User provided reference genes

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