Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 0.0e+00 1126.3 580 100.0
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.5e-277 959.1 598 85.3
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 5.7e-277 957.2 596 85.1
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.4e-275 952.6 597 84.9
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 2.9e-273 944.9 600 82.8
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 7.2e-272 940.3 600 82.7
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 6.1e-271 937.2 600 81.8
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 8.0e-271 936.8 608 81.7
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 8.0e-271 936.8 608 81.7
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 7.5e-269 930.2 600 81.2
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.5e-264 914.1 603 79.8
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 7.5e-261 903.7 603 78.3
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 6.6e-257 890.6 600 78.3
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.4e-254 882.9 613 76.2
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.2e-244 849.0 524 85.9
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 9.2e-227 790.4 529 78.3
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.4e-211 739.2 601 66.7
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.2e-189 667.2 595 57.6
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 4.6e-186 655.2 583 58.3
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 4.6e-186 655.2 599 57.9
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.4e-185 653.7 599 56.3
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 4.8e-183 645.2 595 56.6
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.1e-182 642.5 583 57.5
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 5.3e-182 641.7 592 56.1
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 7.7e-181 637.9 593 56.8
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.3e-180 637.1 579 57.9
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 8.5e-180 634.4 594 56.7
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.6e-178 630.2 599 56.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.1e-178 629.8 599 58.3
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.9e-177 625.5 599 57.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 6.7e-177 624.8 600 55.7
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.0e-176 623.2 599 57.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 7.4e-176 621.3 599 53.8
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 9.7e-176 620.9 593 56.8
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 2.8e-175 619.4 594 54.7
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.1e-174 617.5 602 53.2
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 5.3e-174 615.1 592 56.9
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.5e-173 613.6 620 53.4
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.6e-173 612.8 579 55.8
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 5.5e-171 605.1 577 54.9
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.6e-170 603.6 573 56.4
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.6e-170 603.6 594 54.5
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 2.7e-170 602.8 593 55.3
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 3.6e-170 602.4 571 56.4
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 1.4e-169 600.5 605 54.9
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 2.3e-169 599.7 590 53.6
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.9e-169 599.0 603 52.7
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.6e-168 596.3 582 54.3
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 4.4e-168 595.5 601 53.2
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.8e-167 592.0 597 53.1
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 8.2e-167 591.3 597 52.9
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.4e-166 589.7 593 54.0
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 5.3e-166 588.6 609 52.1
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.6e-165 587.0 582 53.4
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 5.9e-165 585.1 597 53.3
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 5.9e-165 585.1 602 53.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.3e-164 583.9 593 52.3
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.7e-164 583.6 514 57.2
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.7e-164 583.6 586 52.9
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 5.0e-164 582.0 590 54.4
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 8.5e-164 581.3 581 53.9
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.1e-163 580.9 595 52.1
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.2e-163 579.3 594 52.5
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 3.2e-163 579.3 521 57.0
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 5.5e-163 578.6 592 52.5
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 5.5e-163 578.6 599 52.6
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.7e-162 576.2 602 52.2
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.7e-162 576.2 597 52.3
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 3.6e-162 575.9 787 42.8
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 8.0e-162 574.7 585 53.3
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.0e-161 572.8 612 50.5
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.1e-158 564.3 587 51.6
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 5.3e-158 562.0 577 53.0
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 5.3e-158 562.0 514 56.2
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.6e-157 560.5 576 54.7
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.5e-157 558.9 590 50.8
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.9e-156 556.2 582 50.5
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.2e-154 550.8 598 50.7
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.7e-154 549.7 597 49.7
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 4.7e-154 548.9 603 50.4
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.3e-153 546.6 641 48.7
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 8.8e-153 544.7 597 49.4
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 3.4e-152 542.7 603 50.1
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.4e-150 536.6 602 49.5
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 3.8e-148 529.3 565 50.1
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 6.1e-146 521.9 595 49.2
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 8.9e-145 518.1 584 48.6
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.1e-142 511.1 547 51.4
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.8e-142 510.4 594 48.1
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.5e-141 506.1 611 47.8
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.9e-140 502.7 609 46.8
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.5e-136 490.7 555 49.2
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.2e-135 486.9 479 52.0
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.1e-118 431.4 602 40.4
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.2e-114 417.9 470 48.7
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.4e-113 413.7 361 59.8
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 3.8e-111 406.4 358 56.7
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.6e-101 374.4 604 39.6
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 7.4e-91 339.0 444 42.8
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.3e-87 328.2 533 37.3
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.2e-87 327.4 332 50.9
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 3.2e-86 323.6 534 37.3
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.3e-83 313.5 558 35.7
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.3e-79 301.6 519 35.1
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 8.4e-79 298.9 268 55.6
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 4.6e-77 293.1 300 54.0
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.2e-71 274.2 287 51.6
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.5e-67 260.8 306 43.5
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.6e-59 234.2 413 35.8
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 7.4e-59 232.6 216 58.3
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.6e-53 214.9 216 55.6
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 8.5e-47 192.6 359 30.9
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.1e-46 192.2 156 63.5
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 4.0e-44 183.7 584 27.4
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.3e-42 178.7 173 52.6
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 6.3e-34 149.8 94 81.9
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 4.3e-30 137.1 112 59.8
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.4e-28 132.1 112 54.5
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 9.2e-25 119.4 116 60.3
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-24 118.2 108 52.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.9e-24 116.7 139 42.4
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 5.6e-22 110.2 100 48.0
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 8.0e-21 106.3 123 43.9
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 2.3e-20 104.8 74 59.5
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 5.2e-20 103.6 74 59.5
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.6e-19 101.3 76 57.9
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.7e-18 98.6 207 33.8
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 2.0e-16 91.7 561 23.0
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 7.8e-16 89.7 136 39.7
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 3.0e-15 87.8 87 46.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 2.5e-14 84.7 80 48.8
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.4e-12 79.0 75 52.0
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.4e-12 79.0 165 33.9
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 9.8e-11 72.8 220 31.8
C03p06490 Brassica napus HOM05D005072 ORTHO05D006209 2.2e-10 71.6 53 67.9
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.6e-08 63.9 150 33.3


User provided reference genes

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