Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 5.9e-215 750.7 422 100.0
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.9e-206 721.8 430 96.3
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 3.5e-199 698.4 446 85.4
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 3.4e-194 681.8 393 92.6
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 9.9e-178 627.1 399 85.5
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 3.1e-171 605.5 449 79.3
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.0e-150 537.3 401 76.8
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.1e-143 513.1 401 73.6
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.0e-137 494.2 404 72.3
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.5e-136 489.6 398 72.1
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.8e-134 483.4 403 71.5
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 2.3e-134 483.0 448 65.0
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 6.5e-129 464.9 398 69.1
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 8.8e-126 454.5 405 67.7
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 5.7e-125 451.8 395 68.4
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 4.7e-111 405.6 400 63.5
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 7.4e-109 398.3 400 63.0
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 7.4e-109 398.3 400 63.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 5.3e-107 392.1 393 62.3
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 9.8e-93 344.7 397 55.7
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 3.7e-84 316.2 413 50.6
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 5.4e-75 285.8 391 49.1
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.6e-69 266.9 418 43.5
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.7e-68 263.1 408 44.9
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 6.4e-68 262.3 394 44.9
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 8.3e-68 261.9 404 45.0
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 8.3e-68 261.9 411 43.1
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 8.3e-68 261.9 409 44.0
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.4e-67 260.4 413 44.3
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.0e-65 255.0 417 46.0
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 2.3e-65 253.8 400 44.8
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.9e-64 250.8 407 42.5
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.6e-63 247.7 391 43.7
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-63 247.7 401 42.6
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 3.6e-63 246.5 410 43.4
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 8.1e-63 245.4 360 45.3
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 3.1e-62 243.4 407 42.3
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.0e-62 243.0 360 45.0
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 6.8e-62 242.3 371 45.3
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 3.4e-61 240.0 382 43.7
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 9.9e-61 238.4 423 40.7
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.9e-60 236.9 410 42.7
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.2e-59 233.4 382 43.7
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 4.1e-59 233.0 393 43.8
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 5.4e-59 232.6 348 46.3
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.6e-58 231.1 408 42.4
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 2.1e-58 230.7 406 40.4
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.7e-58 230.3 407 40.8
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.5e-58 229.9 412 41.3
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 4.6e-58 229.6 372 43.8
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 6.0e-58 229.2 403 40.9
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.3e-57 228.0 382 42.1
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 8.6e-57 225.3 391 41.7
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.5e-56 224.6 397 39.5
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 7.3e-56 222.2 402 39.3
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-55 221.5 367 41.7
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.2e-55 221.5 363 41.9
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.1e-55 220.7 382 42.7
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 2.1e-55 220.7 416 39.4
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.6e-55 219.9 331 43.8
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 4.7e-55 219.5 422 41.0
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 8.1e-55 218.8 390 41.5
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.8e-54 217.6 393 40.2
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.4e-54 217.2 331 42.9
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 2.4e-54 217.2 371 42.9
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.1e-54 216.9 389 40.6
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.2e-53 214.9 425 39.8
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.2e-53 214.9 369 41.2
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.5e-53 214.5 403 41.7
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.6e-53 213.8 315 43.8
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 4.4e-53 213.0 408 39.5
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 7.6e-53 212.2 386 39.6
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 9.9e-53 211.8 359 42.1
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 9.9e-53 211.8 367 41.4
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.1e-51 208.4 373 39.7
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.4e-51 208.0 427 38.2
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.9e-51 207.6 423 37.8
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.4e-51 207.2 408 37.3
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 5.4e-51 206.1 428 40.2
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 7.1e-51 205.7 392 40.1
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 6.0e-50 202.6 358 40.2
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.0e-49 201.8 379 36.9
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.9e-48 197.6 350 41.1
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 9.6e-48 195.3 386 38.9
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.2e-47 194.9 417 36.7
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 3.6e-47 193.4 359 39.3
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 3.6e-47 193.4 359 39.3
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.7e-47 193.0 299 41.5
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 6.2e-47 192.6 407 37.3
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 6.2e-47 192.6 344 40.7
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 4.0e-46 189.9 367 39.2
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 6.9e-46 189.1 338 39.6
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.2e-45 188.3 416 38.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 2.9e-44 183.7 410 35.1
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.9e-43 181.0 401 34.9
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 6.0e-42 176.0 330 40.3
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.0e-41 175.3 364 37.9
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.7e-41 174.5 392 37.0
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.1e-40 171.8 362 36.5
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.1e-40 171.8 378 36.8
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 4.2e-35 153.3 286 37.1
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 7.1e-35 152.5 388 34.0
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.2e-34 151.8 252 39.7
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.6e-34 151.4 405 35.6
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 4.6e-34 149.8 383 35.5
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 4.6e-34 149.8 289 36.3
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.8e-33 147.9 298 37.2
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 9.6e-32 142.1 404 32.2
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 3.1e-30 137.1 343 33.2
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.5e-29 134.8 311 31.8
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 3.8e-28 130.2 205 38.5
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 3.5e-26 123.6 370 34.3
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 6.7e-25 119.4 246 35.8
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 9.6e-24 115.5 293 33.1
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 6.2e-23 112.8 305 32.1
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 2.4e-22 110.9 220 35.9
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.4e-22 110.9 138 50.7
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 3.1e-22 110.5 230 34.8
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-21 108.2 269 32.3
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.6e-21 107.5 178 38.8
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.0e-20 105.5 264 35.6
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.9e-20 103.2 185 42.7
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.6e-18 98.2 159 42.1
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-16 91.7 170 34.1
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.9e-16 91.3 267 31.8
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.5e-16 90.9 145 46.9
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.8e-15 86.7 162 40.1
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 9.0e-14 82.4 392 26.5
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 5.5e-11 73.2 125 43.2
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 2.1e-10 71.2 242 28.5
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 6.1e-10 69.7 125 40.8
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.1e-06 58.9 81 45.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-06 58.5 147 35.4


User provided reference genes

Program Settings