Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.6e-62 242.7 132 100.0
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 8.2e-38 160.6 132 75.8
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 3.1e-37 158.7 132 75.0
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 3.1e-37 158.7 132 75.0
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 3.1e-37 158.7 132 75.0
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 3.1e-37 158.7 132 75.0
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 3.1e-37 158.7 132 75.0
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 3.1e-37 158.7 132 75.0
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 6.9e-37 157.5 132 74.2
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 9.0e-37 157.1 132 70.5
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 9.0e-37 157.1 132 70.5
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 9.0e-37 157.1 132 74.2
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.2e-36 156.8 132 72.0
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.5e-36 154.8 132 64.4
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.5e-36 154.8 132 72.7
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.0e-35 153.7 132 63.6
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.2e-35 152.5 132 63.6
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.8e-35 151.8 132 63.6
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 9.3e-34 147.1 132 61.4
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 9.3e-34 147.1 132 62.1
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 6.1e-33 144.4 132 59.8
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.2e-30 136.0 132 59.1
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.8e-30 134.8 135 54.1
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 4.8e-30 134.8 131 61.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.1e-29 133.7 132 57.6
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.1e-29 133.7 132 57.6
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.4e-29 132.5 132 56.8
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 4.1e-29 131.7 131 54.2
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 4.1e-29 131.7 132 59.1
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 4.1e-29 131.7 131 54.2
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 5.3e-29 131.3 131 54.2
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.3e-29 131.3 131 58.0
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 5.3e-29 131.3 130 59.2
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 6.9e-29 131.0 131 61.1
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 9.1e-29 130.6 131 61.8
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 9.1e-29 130.6 131 61.1
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.0e-28 129.4 131 60.3
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.0e-28 129.4 131 53.4
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 2.6e-28 129.0 132 54.5
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 4.5e-28 128.3 132 52.3
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 4.5e-28 128.3 131 59.5
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 7.7e-28 127.5 132 51.5
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.0e-27 127.1 132 59.8
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 1.0e-27 127.1 131 51.1
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.0e-27 127.1 130 52.3
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.3e-27 126.7 132 61.4
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.3e-27 126.7 132 56.8
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.3e-27 126.7 135 51.1
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.7e-27 126.3 131 51.1
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.7e-27 126.3 131 51.9
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.7e-27 126.3 131 51.9
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 2.2e-27 125.9 132 50.8
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.2e-27 125.9 132 53.0
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 2.9e-27 125.6 131 51.1
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 2.9e-27 125.6 132 50.8
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 5.0e-27 124.8 131 59.5
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 5.0e-27 124.8 132 53.0
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 5.0e-27 124.8 131 51.1
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 6.5e-27 124.4 130 51.5
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.5e-27 124.4 131 60.3
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 6.5e-27 124.4 131 59.5
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 8.5e-27 124.0 131 51.9
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.1e-26 123.6 131 55.7
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.1e-26 123.6 121 62.8
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.1e-26 123.6 131 58.0
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.1e-26 123.6 131 50.4
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.1e-26 123.6 134 48.5
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.4e-26 123.2 129 51.2
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.4e-26 123.2 132 57.6
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.4e-26 123.2 134 56.7
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.4e-26 123.2 134 48.5
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.9e-26 122.9 132 51.5
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 2.5e-26 122.5 131 58.0
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 2.5e-26 122.5 132 59.8
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 2.5e-26 122.5 131 50.4
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 3.2e-26 122.1 131 51.1
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 3.2e-26 122.1 132 58.3
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 3.2e-26 122.1 132 57.6
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 4.2e-26 121.7 132 56.1
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 5.5e-26 121.3 132 57.6
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 5.5e-26 121.3 131 58.0
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 5.5e-26 121.3 131 58.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.2e-26 120.9 131 50.4
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 9.4e-26 120.6 131 58.0
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 9.4e-26 120.6 131 60.3
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.2e-25 120.2 131 59.5
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.2e-25 120.2 131 50.4
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 4.7e-25 118.2 130 58.5
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 7.9e-25 117.5 132 53.8
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.0e-24 117.1 131 57.3
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.4e-24 116.7 122 52.5
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.4e-24 116.7 132 55.3
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.3e-24 115.9 129 58.9
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 3.0e-24 115.5 131 58.0
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 3.0e-24 115.5 130 56.9
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 3.9e-24 115.2 132 59.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 8.8e-24 114.0 132 57.6
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 8.8e-24 114.0 132 57.6
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.5e-23 113.2 131 55.7
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.0e-23 112.8 132 56.1
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 2.6e-23 112.5 104 72.1
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 4.4e-23 111.7 131 55.0
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 5.7e-23 111.3 133 55.6
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.7e-22 109.8 133 54.9
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.3e-22 107.8 130 54.6
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 2.4e-21 105.9 131 50.4
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.1e-21 105.1 105 53.3
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.4e-20 102.1 130 53.8
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 3.8e-19 98.6 111 51.4
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 3.8e-19 98.6 111 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 6.5e-19 97.8 130 50.0
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.4e-18 96.7 111 48.6
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.4e-18 96.7 111 48.6
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 4.2e-18 95.1 111 48.6
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 4.2e-18 95.1 111 50.5
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 4.2e-18 95.1 111 48.6
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 4.2e-18 95.1 111 48.6
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.2e-18 95.1 111 47.7
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 5.5e-18 94.7 110 48.2
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 9.4e-18 94.0 111 46.8
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-17 93.6 111 47.7
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.2e-17 93.6 111 47.7
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.1e-17 92.8 111 46.8
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.0e-16 90.5 71 66.2
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.3e-16 89.4 111 45.9
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 2.8e-14 82.4 108 42.6
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 6.3e-14 81.3 75 58.7
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 9.1e-13 77.4 103 53.4
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.6e-12 76.6 87 56.3
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 2.6e-12 75.9 107 40.2
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.3e-11 73.6 107 39.3
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 5.0e-11 71.6 85 45.9
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 6.5e-11 71.2 86 44.2
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.0e-08 63.9 105 41.0
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 3.0e-08 62.4 87 41.4
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 3.3e-07 58.9 105 35.2
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 9.7e-07 57.4 111 35.1
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.3e-06 57.0 111 35.1


User provided reference genes

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