Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05349 Brassica carinata HOM05D002317 ORTHO05D002420 5.6e-26 120.2 60 100.0
Thhalv10012885m.g Eutrema salsugineum HOM05D002317 ORTHO05D002420 1.6e-12 75.5 42 85.7
AL6G24170 Arabidopsis lyrata HOM05D002317 ORTHO05D002420 2.1e-12 75.1 42 85.7
AT5G13560 Arabidopsis thaliana HOM05D002317 ORTHO05D002420 2.1e-12 75.1 42 85.7
Carub.0006s1172 Capsella rubella HOM05D002317 ORTHO05D002420 2.1e-12 75.1 42 85.7
Sp6g30470 Schrenkiella parvula HOM05D002317 ORTHO05D002420 2.1e-12 75.1 42 85.7
Aa31sc157G20 Aethionema arabicum HOM05D002317 ORTHO05D002420 4.6e-12 73.9 42 83.3
A02p02020 Brassica napus HOM05D002317 ORTHO05D002420 4.6e-12 73.9 39 89.7
BcaNung06331 Brassica carinata HOM05D002317 ORTHO05D002420 1.0e-11 72.8 42 81.0
BcaNung01145 Brassica carinata HOM05D002317 ORTHO05D002420 1.3e-11 72.4 39 87.2
BcaNung06332 Brassica carinata HOM05D002317 ORTHO05D002420 1.3e-11 72.4 39 87.2
C02p06230 Brassica napus HOM05D002317 ORTHO05D002420 1.3e-11 72.4 39 87.2
BolC2t06567H Brassica oleracea HOM05D002317 ORTHO05D002420 1.3e-11 72.4 39 87.2
CARHR199880 Cardamine hirsuta HOM05D002317 ORTHO05D002420 1.3e-11 72.4 42 81.0
C09p63540 Brassica napus HOM05D002317 ORTHO05D002420 3.9e-11 70.9 42 81.0
BolC9t59198H Brassica oleracea HOM05D002317 ORTHO05D002420 3.9e-11 70.9 42 81.0
BcaC04g19107 Brassica carinata HOM05D002317 ORTHO05D002420 5.1e-11 70.5 42 81.0
A10p24710 Brassica napus HOM05D002317 ORTHO05D002420 5.1e-11 70.5 42 81.0
BraA02t05174Z Brassica rapa HOM05D002317 ORTHO05D002420 5.1e-11 70.5 39 87.2
BraA10t44534Z Brassica rapa HOM05D002317 ORTHO05D002420 5.1e-11 70.5 42 81.0
Thecc.10G060500 Theobroma cacao HOM05D002317 ORTHO05D002420 1.2e-09 65.9 39 76.9
CANSAT56G2271 Cannabis sativa HOM05D002317 ORTHO05D002420 2.1e-09 65.1 41 70.7
TAR623G1778 Trochodendron aralioides HOM05D002317 ORTHO05D002420 2.1e-09 65.1 38 76.3
PGR142G0021 Punica granatum HOM05D002317 ORTHO05D002420 2.8e-09 64.7 39 74.4
THA.LOC104799368 Tarenaya hassleriana HOM05D002317 ORTHO05D002420 2.8e-09 64.7 39 82.1
ATR0759G004 Amborella trichopoda HOM05D002317 ORTHO05D002420 3.6e-09 64.3 39 71.8
TAR369G0742 Trochodendron aralioides HOM05D002317 ORTHO05D002420 4.7e-09 63.9 39 74.4
CSS0029275 Camellia sinensis var. sinensis HOM05D002317 ORTHO05D002420 6.2e-09 63.5 41 73.2
Migut.F00787 Erythranthe guttata HOM05D002317 ORTHO05D002420 6.2e-09 63.5 39 71.8
Nitab4.5_0003274g0040 Nicotiana tabacum HOM05D002317 ORTHO05D002420 6.2e-09 63.5 39 71.8
Nitab4.5_0010302g0010 Nicotiana tabacum HOM05D002317 ORTHO05D002420 6.2e-09 63.5 39 71.8
Ciclev10030880m.g Citrus clementina HOM05D002317 ORTHO05D002420 1.1e-08 62.8 39 71.8
Haze_16977 Corylus avellana HOM05D002317 ORTHO05D002420 1.1e-08 62.8 39 74.4
Dinv25944 Davidia involucrata HOM05D002317 ORTHO05D002420 1.1e-08 62.8 39 71.8
MBI14_g35935_MAGBIO Magnolia biondii HOM05D002317 ORTHO05D002420 1.1e-08 62.8 41 68.3
PSO339G5867 Papaver somniferum HOM05D002317 ORTHO05D002420 1.1e-08 62.8 40 75.0
PSO384G0194 Papaver somniferum HOM05D002317 ORTHO05D002420 1.1e-08 62.8 40 75.0
Rhsim03G0125700 Rhododendron simsii HOM05D002317 ORTHO05D002420 1.1e-08 62.8 39 76.9
Aqoxy2G01951 Aquilegia oxysepala HOM05D002317 ORTHO05D002420 1.4e-08 62.4 41 65.9
HanXRQChr07g0191731 Helianthus annuus HOM05D002317 ORTHO05D002420 1.4e-08 62.4 56 55.4
Prupe.2G225300 Prunus persica HOM05D002317 ORTHO05D002420 1.4e-08 62.4 39 74.4
GSVIVG01032617001 Vitis vinifera HOM05D002317 ORTHO05D002420 1.4e-08 62.4 39 71.8
Duzib114G1018 Durio zibethinus HOM05D002317 ORTHO05D002420 1.8e-08 62.0 39 71.8
MD07G1186500 Malus domestica HOM05D002317 ORTHO05D002420 1.8e-08 62.0 41 68.3
Phvul.007G008700 Phaseolus vulgaris HOM05D002317 ORTHO05D002420 1.8e-08 62.0 38 76.3
Actinidia38219 Actinidia chinensis HOM05D002317 ORTHO05D002420 2.3e-08 61.6 39 74.4
Oeu058316.1 Olea europaea HOM05D002317 ORTHO05D002420 2.3e-08 61.6 39 71.8
Oeu058317.1 Olea europaea HOM05D002317 ORTHO05D002420 2.3e-08 61.6 39 71.8
vmacro07136 Vaccinium macrocarpon HOM05D002317 ORTHO05D002420 2.3e-08 61.6 39 74.4
Actinidia02994 Actinidia chinensis HOM05D002317 ORTHO05D002420 3.1e-08 61.2 39 74.4
BcaNung01891 Brassica carinata HOM05D002317 ORTHO05D002420 3.1e-08 61.2 36 80.6
CiPaw.02G178900 Carya illinoinensis HOM05D002317 ORTHO05D002420 3.1e-08 61.2 39 71.8
Eucgr.G02771 Eucalyptus grandis HOM05D002317 ORTHO05D002420 4.0e-08 60.8 47 61.7
FvH4_7g20871 Fragaria vesca HOM05D002317 ORTHO05D002420 4.0e-08 60.8 39 71.8
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.0e-08 60.8 39 71.8
FAN03G3213 Fragaria x ananassa HOM05D002317 ORTHO05D002420 4.0e-08 60.8 39 71.8
FAN06G0204 Fragaria x ananassa HOM05D002317 ORTHO05D002420 4.0e-08 60.8 39 71.8
FAN06G4957 Fragaria x ananassa HOM05D002317 ORTHO05D002420 4.0e-08 60.8 39 71.8
FAN10G1751 Fragaria x ananassa HOM05D002317 ORTHO05D002420 4.0e-08 60.8 39 71.8
Peaxi162Scf00658g00638 Petunia axillaris HOM05D002317 ORTHO05D002420 4.0e-08 60.8 39 69.2
Potri.008G048100 Populus trichocarpa HOM05D002317 ORTHO05D002420 5.2e-08 60.5 39 71.8
RcHm_v2.0_Chr1g0365121 Rosa chinensis HOM05D002317 ORTHO05D002420 5.2e-08 60.5 39 71.8
Duzib128G0207 Durio zibethinus HOM05D002317 ORTHO05D002420 6.8e-08 60.1 39 69.2
Cpa.g.sc1.311 Carica papaya HOM05D002317 ORTHO05D002420 8.9e-08 59.7 39 71.8
EL10Ac2g03481 Beta vulgaris HOM05D002317 ORTHO05D002420 1.2e-07 59.3 38 68.4
Gohir.A10G209900 Gossypium hirsutum HOM05D002317 ORTHO05D002420 1.2e-07 59.3 39 69.2
Gorai.011G244900 Gossypium raimondii HOM05D002317 ORTHO05D002420 1.2e-07 59.3 39 69.2
Sabra10G0164800 Salix brachista HOM05D002317 ORTHO05D002420 1.2e-07 59.3 39 69.2
Glyma.10G292100 Glycine max HOM05D002317 ORTHO05D002420 1.5e-07 58.9 38 71.1
Glyma.20G241400 Glycine max HOM05D002317 ORTHO05D002420 1.5e-07 58.9 38 71.1
Potri.010G212900 Populus trichocarpa HOM05D002317 ORTHO05D002420 1.5e-07 58.9 39 69.2
QL08p057705 Quercus lobata HOM05D002317 ORTHO05D002420 1.5e-07 58.9 38 71.1
Cc02_g08560 Coffea canephora HOM05D002317 ORTHO05D002420 2.0e-07 58.5 41 65.9
MELO3C023813.2 Cucumis melo HOM05D002317 ORTHO05D002420 2.0e-07 58.5 41 65.9
CsaV3_5G006560 Cucumis sativus L. HOM05D002317 ORTHO05D002420 2.0e-07 58.5 41 65.9
DCAR_015242 Daucus carota HOM05D002317 ORTHO05D002420 2.0e-07 58.5 38 73.7
MD13G1157000 Malus domestica HOM05D002317 ORTHO05D002420 2.0e-07 58.5 36 72.2
RcHm_v2.0_Chr7g0221351 Rosa chinensis HOM05D002317 ORTHO05D002420 2.0e-07 58.5 38 71.1
Sabra08G0034300 Salix brachista HOM05D002317 ORTHO05D002420 2.0e-07 58.5 39 69.2
TWI38G1115 Tripterygium wilfordii HOM05D002317 ORTHO05D002420 2.0e-07 58.5 38 73.7
Atru.chr12.581 Acer truncatum HOM05D002317 ORTHO05D002420 2.6e-07 58.2 39 61.5
CAN.G1193.1 Capsicum annuum HOM05D002317 ORTHO05D002420 2.6e-07 58.2 39 64.1
ECA238G1105 Erigeron canadensis HOM05D002317 ORTHO05D002420 2.6e-07 58.2 38 68.4
HanXRQChr14g0444611 Helianthus annuus HOM05D002317 ORTHO05D002420 2.6e-07 58.2 40 65.0
arahy.Tifrunner.gnm1.ann1.KMKI2D Arachis hypogaea HOM05D002317 ORTHO05D002420 3.4e-07 57.8 35 74.3
arahy.Tifrunner.gnm1.ann1.MSYP3Y Arachis hypogaea HOM05D002317 ORTHO05D002420 3.4e-07 57.8 35 74.3
arahy.Tifrunner.gnm1.ann1.QR9DU5 Arachis hypogaea HOM05D002317 ORTHO05D002420 3.4e-07 57.8 35 74.3
AUR62035983 Chenopodium quinoa HOM05D002317 ORTHO05D002420 3.4e-07 57.8 35 74.3
Lalb_Chr21g0307211 Lupinus albus HOM05D002317 ORTHO05D002420 3.4e-07 57.8 35 74.3
Manes.07G107300 Manihot esculenta HOM05D002317 ORTHO05D002420 3.4e-07 57.8 38 71.1
Sed0019600 Sechium edule HOM05D002317 ORTHO05D002420 3.4e-07 57.8 41 63.4
CDE04G0782 Ceratophyllum demersum HOM05D002317 ORTHO05D002420 4.4e-07 57.4 41 58.5
CDE07G0510 Ceratophyllum demersum HOM05D002317 ORTHO05D002420 4.4e-07 57.4 41 58.5
AUR62041631 Chenopodium quinoa HOM05D002317 ORTHO05D002420 4.4e-07 57.4 35 74.3
Ca_11316_v3 Cicer arietinum L. HOM05D002317 ORTHO05D002420 5.8e-07 57.0 34 76.5
Gohir.D10G218200 Gossypium hirsutum HOM05D002317 ORTHO05D002420 5.8e-07 57.0 39 66.7
Lj5g0002945 Lotus japonicus HOM05D002317 ORTHO05D002420 5.8e-07 57.0 38 68.4
Lalb_Chr06g0164131 Lupinus albus HOM05D002317 ORTHO05D002420 5.8e-07 57.0 38 68.4
Sed0008808 Sechium edule HOM05D002317 ORTHO05D002420 7.6e-07 56.6 41 63.4
ClCG02G013630 Citrullus lanatus HOM05D002317 ORTHO05D002420 1.3e-06 55.8 41 61.0
Gohir.D04G060600 Gossypium hirsutum HOM05D002317 ORTHO05D002420 1.7e-06 55.5 38 65.8
unitig_0.g1962 Utricularia gibba HOM05D002317 ORTHO05D002420 1.7e-06 55.5 39 64.1
Gorai.012G067500 Gossypium raimondii HOM05D002317 ORTHO05D002420 2.2e-06 55.1 38 65.8
SGA_v2.0_scaffold243G44313 Striga asiatica HOM05D002317 ORTHO05D002420 2.2e-06 55.1 46 54.3
Manes.10G038600 Manihot esculenta HOM05D002317 ORTHO05D002420 3.7e-06 54.3 40 62.5
Hund30771 Selenicereus undatus HOM05D002317 ORTHO05D002420 3.7e-06 54.3 35 68.6
DCAR_019157 Daucus carota HOM05D002317 ORTHO05D002420 4.9e-06 53.9 39 71.8
Peaxi162Scf00060g00621 Petunia axillaris HOM05D002317 ORTHO05D002420 4.9e-06 53.9 35 71.4
Nitab4.5_0008987g0020 Nicotiana tabacum HOM05D002317 ORTHO05D002420 6.4e-06 53.5 35 71.4
Medtr1g115610 Medicago truncatula HOM05D002317 ORTHO05D002420 8.4e-06 53.1 38 68.4
Psat6g238320 Pisum sativum HOM05D002317 ORTHO05D002420 8.4e-06 53.1 38 68.4


User provided reference genes

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