Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 6.3e-266 920.2 471 100.0
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 1.5e-254 882.5 471 96.2
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 1.5e-254 882.5 471 96.2
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 1.6e-253 879.0 472 96.0
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 1.6e-253 879.0 472 96.0
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 3.6e-253 877.9 472 95.8
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 6.5e-247 857.1 472 93.0
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 3.2e-246 854.7 472 92.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 2.7e-245 851.7 472 92.8
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 3.6e-245 851.3 472 92.2
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 1.4e-244 849.4 472 92.4
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 1.4e-244 849.4 472 92.4
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 7.5e-235 817.0 466 90.3
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 7.0e-225 783.9 472 84.3
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 1.3e-223 779.6 472 83.9
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 2.3e-223 778.9 471 83.7
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 5.6e-222 774.2 472 84.3
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 7.3e-222 773.9 472 83.5
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 9.5e-222 773.5 472 83.5
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.2e-221 773.1 471 83.4
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 4.7e-221 771.2 471 82.4
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 4.7e-221 771.2 472 83.3
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 8.0e-221 770.4 471 83.0
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 1.8e-220 769.2 471 83.0
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 5.2e-220 767.7 474 82.3
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 6.8e-220 767.3 472 82.8
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 6.8e-220 767.3 474 81.9
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 8.9e-220 766.9 471 83.2
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 2.0e-219 765.8 473 83.3
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 2.6e-219 765.4 465 83.7
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 2.6e-219 765.4 470 82.3
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 3.4e-219 765.0 472 82.2
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 3.4e-219 765.0 471 81.7
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 5.8e-219 764.2 470 82.1
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 5.8e-219 764.2 470 83.6
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 7.5e-219 763.8 473 82.2
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 1.3e-218 763.1 472 83.1
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 1.7e-218 762.7 472 82.4
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 2.2e-218 762.3 473 82.0
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 2.2e-218 762.3 473 82.5
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 3.7e-218 761.5 471 82.4
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 3.7e-218 761.5 471 81.7
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 3.7e-218 761.5 472 81.8
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 4.9e-218 761.1 472 83.5
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 6.4e-218 760.8 471 82.6
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 8.3e-218 760.4 471 81.7
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 8.3e-218 760.4 473 81.6
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 8.3e-218 760.4 473 81.6
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 1.1e-217 760.0 474 81.6
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 1.1e-217 760.0 471 82.8
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 1.4e-217 759.6 471 82.4
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 2.4e-217 758.8 471 82.8
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 3.2e-217 758.4 471 81.5
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 4.1e-217 758.1 473 81.6
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 4.1e-217 758.1 471 82.4
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 4.1e-217 758.1 471 81.5
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 5.4e-217 757.7 473 81.6
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 7.0e-217 757.3 472 81.6
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 7.0e-217 757.3 471 82.6
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 7.0e-217 757.3 474 81.0
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 7.0e-217 757.3 472 81.4
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 9.2e-217 756.9 476 80.9
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 9.2e-217 756.9 474 80.8
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 9.2e-217 756.9 474 80.8
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 9.2e-217 756.9 471 81.3
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 1.2e-216 756.5 473 81.8
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 1.6e-216 756.1 471 82.0
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 2.0e-216 755.7 473 81.6
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 3.5e-216 755.0 471 81.5
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.5e-216 755.0 471 81.5
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 4.6e-216 754.6 472 80.9
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 6.0e-216 754.2 472 81.6
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 6.0e-216 754.2 472 82.2
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 1.0e-215 753.4 476 80.5
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 1.7e-215 752.7 472 81.4
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 3.0e-215 751.9 473 82.0
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 5.0e-215 751.1 472 80.9
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 8.6e-215 750.4 472 79.9
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 8.6e-215 750.4 471 80.9
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 8.6e-215 750.4 471 80.9
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 1.1e-214 750.0 472 81.1
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.5e-214 749.6 471 80.9
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 1.9e-214 749.2 472 81.1
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.5e-214 748.8 471 80.7
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 3.3e-214 748.4 473 80.8
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 3.3e-214 748.4 473 79.3
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 4.3e-214 748.0 468 81.0
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 4.3e-214 748.0 466 81.8
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 7.3e-214 747.3 473 80.3
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 9.5e-214 746.9 466 81.3
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.1e-213 745.7 471 80.7
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 4.7e-213 744.6 473 80.3
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 2.3e-212 742.3 456 82.9
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 2.3e-212 742.3 470 79.6
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 5.2e-212 741.1 472 79.9
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 8.9e-212 740.3 473 80.3
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 2.0e-211 739.2 473 80.1
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 1.3e-210 736.5 470 80.0
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 1.1e-209 733.4 424 85.1
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 9.2e-209 730.3 425 85.4
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 1.7e-207 726.1 457 82.3
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 3.0e-207 725.3 471 78.1
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 5.1e-207 724.5 471 78.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 4.1e-201 704.9 474 75.9
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 1.3e-199 699.9 471 76.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 1.5e-198 696.4 412 84.5
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 1.2e-195 686.8 457 76.1
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 1.9e-193 679.5 471 75.6
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 2.8e-189 665.6 418 77.8
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 7.1e-185 651.0 418 75.6
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 4.6e-184 648.3 471 74.1
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 1.1e-182 643.7 436 71.8
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 1.1e-182 643.7 436 71.8
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 9.6e-182 640.6 429 72.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 2.8e-181 639.0 471 70.5
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 1.1e-180 637.1 433 70.4
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 3.2e-177 625.5 425 70.4
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 9.0e-164 580.9 412 74.3
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 6.9e-156 554.7 415 65.3
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.1e-153 547.4 418 64.1
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.8e-151 540.0 299 87.3
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 1.4e-148 530.4 419 62.8
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 9.3e-68 261.9 151 84.8
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 8.2e-56 222.2 119 86.6
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 7.9e-43 179.1 100 81.0
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 6.7e-42 176.0 175 57.7
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 5.5e-28 129.8 385 30.6
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 9.7e-25 119.0 382 26.2
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 8.0e-19 99.4 58 81.0
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 4.4e-17 93.6 107 53.3


User provided reference genes

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