Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.4e-179 632.9 331 100.0
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 9.8e-157 557.0 324 90.7
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 6.2e-143 511.1 380 76.3
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 8.9e-142 507.3 380 75.5
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 2.6e-141 505.8 379 74.7
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 3.4e-141 505.4 380 75.3
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 3.7e-140 501.9 380 73.7
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 2.7e-138 495.7 393 72.8
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 4.6e-138 495.0 389 73.3
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 7.8e-138 494.2 380 73.4
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 3.9e-137 491.9 370 75.4
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 9.6e-136 487.3 380 72.9
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 3.6e-135 485.3 380 72.1
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 1.8e-134 483.0 377 72.7
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 4.6e-130 468.4 379 71.5
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 2.4e-126 456.1 381 67.7
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 9.3e-123 444.1 329 74.5
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 1.5e-120 436.8 329 72.9
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 1.5e-120 436.8 329 72.9
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 2.6e-117 426.0 329 72.0
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 1.7e-116 423.3 323 72.1
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 6.4e-116 421.4 321 72.3
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 3.7e-111 405.6 251 84.1
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 4.8e-111 405.2 395 60.8
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 4.2e-99 365.5 393 55.7
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 4.6e-98 362.1 387 55.0
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.0e-97 360.9 390 55.1
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.9e-96 356.7 389 55.5
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 4.3e-96 355.5 356 59.0
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 4.3e-96 355.5 389 55.3
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.8e-95 352.8 389 55.8
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 4.8e-95 352.1 389 55.0
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 1.1e-94 350.9 381 53.3
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 1.8e-94 350.1 389 53.5
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 1.8e-94 350.1 387 55.0
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 3.1e-94 349.4 360 56.1
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 4.1e-94 349.0 401 52.9
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 6.9e-94 348.2 371 55.8
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 9.0e-94 347.8 378 52.4
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 1.5e-93 347.1 364 55.8
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 3.4e-93 345.9 386 53.9
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 3.4e-93 345.9 389 53.5
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 5.9e-93 345.1 364 54.9
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 5.9e-93 345.1 387 53.7
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 7.7e-93 344.7 375 54.1
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.0e-92 344.4 363 54.8
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.7e-92 343.6 364 54.7
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 1.7e-92 343.6 384 53.4
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 2.9e-92 342.8 386 53.6
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 2.9e-92 342.8 361 55.1
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 1.4e-91 340.5 371 54.4
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.4e-91 340.5 367 54.8
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 1.4e-91 340.5 359 54.9
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 1.4e-91 340.5 380 52.9
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 1.9e-91 340.1 363 54.3
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.9e-91 340.1 423 49.2
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 3.2e-91 339.3 387 53.2
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 5.5e-91 338.6 358 55.0
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 5.5e-91 338.6 370 53.5
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 9.4e-91 337.8 295 62.4
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 2.1e-90 336.7 390 53.1
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 2.7e-90 336.3 367 54.5
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 3.6e-90 335.9 387 52.2
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 4.6e-90 335.5 360 54.7
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 6.1e-90 335.1 364 53.6
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 7.9e-90 334.7 319 58.3
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.0e-89 334.3 367 53.7
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.8e-89 333.6 384 51.6
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 2.3e-89 333.2 366 53.8
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 3.9e-89 332.4 372 52.4
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 8.8e-89 331.3 288 61.8
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.5e-88 330.5 336 55.4
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.5e-88 330.5 288 62.2
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 2.0e-88 330.1 305 60.0
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 3.3e-88 329.3 312 58.3
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 3.3e-88 329.3 288 61.5
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 7.4e-88 328.2 288 61.8
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 9.7e-88 327.8 375 51.2
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 1.3e-87 327.4 347 52.7
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.7e-87 327.0 385 51.7
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 2.2e-87 326.6 364 53.0
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 6.3e-87 325.1 417 47.7
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 6.3e-87 325.1 378 51.6
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 8.2e-87 324.7 379 51.5
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 1.8e-86 323.6 295 60.3
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 1.8e-86 323.6 282 62.4
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 6.9e-86 321.6 371 52.8
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 1.5e-85 320.5 348 55.5
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 1.3e-84 317.4 401 47.1
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 1.3e-84 317.4 362 50.8
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 3.8e-84 315.8 377 50.1
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 5.0e-84 315.5 292 60.3
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 8.5e-84 314.7 290 60.0
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 2.5e-83 313.2 366 51.9
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 3.2e-83 312.8 368 50.5
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 7.2e-83 311.6 366 51.9
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 7.2e-83 311.6 291 56.4
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.2e-82 310.8 334 53.3
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 4.7e-82 308.9 384 50.0
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 3.3e-80 302.8 366 49.5
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 2.8e-79 299.7 251 63.3
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 3.7e-79 299.3 436 45.2
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 1.6e-74 283.9 372 49.2
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 6.7e-73 278.5 288 54.9
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 8.2e-71 271.6 358 49.4
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 1.1e-70 271.2 199 69.3
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.6e-69 267.3 298 51.7
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 2.5e-67 260.0 199 67.3
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.2e-66 257.7 197 67.5
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 3.4e-64 249.6 283 47.3
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 9.8e-64 248.1 250 56.0
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 9.1e-62 241.5 276 48.6
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 3.8e-60 236.1 295 48.5
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.5e-59 233.4 307 44.6
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 5.5e-59 232.3 276 48.6
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.4e-54 217.6 274 48.9
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 7.0e-54 215.3 177 63.8
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 2.7e-53 213.4 395 40.5
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.0e-52 211.5 169 65.1
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 5.0e-52 209.1 303 44.9
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 8.6e-52 208.4 386 39.4
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.3e-49 200.3 171 62.0
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 6.8e-49 198.7 188 57.4
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.5e-48 197.6 185 57.8
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.1e-46 191.4 361 38.8
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 5.0e-44 182.6 169 58.6
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 6.2e-42 175.6 115 68.7
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.3e-39 167.9 203 48.8
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 5.0e-36 156.0 314 33.4
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 8.6e-36 155.2 211 49.3
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 4.9e-31 139.4 323 32.5
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 7.1e-30 135.6 311 30.9
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 2.7e-29 133.7 176 49.4
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.3e-27 126.7 102 64.7
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.1e-25 121.7 202 37.1
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 4.4e-24 116.3 194 40.2
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 2.9e-23 113.6 175 44.6
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 3.8e-23 113.2 239 33.9
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.8e-23 113.2 111 55.0
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 1.6e-18 97.8 67 68.7
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 6.2e-18 95.9 200 33.0
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 4.2e-14 83.2 161 37.3
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 2.1e-13 80.9 178 37.1
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 6.0e-13 79.3 72 59.7
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.7e-12 77.8 69 58.0
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 5.6e-11 72.8 132 39.4
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 1.6e-10 71.2 73 52.1
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 9.0e-09 65.5 48 66.7
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 2.2e-07 60.8 59 55.9
A10p20470 Brassica napus HOM05D004989 ORTHO05D039594 7.1e-06 55.8 42 69.0


User provided reference genes

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