Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05283 Brassica carinata HOM05D007340 ORTHO05D008979 8.0e-82 307.0 149 100.0
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 1.6e-53 213.0 165 67.3
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 1.7e-52 209.5 165 66.1
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 3.0e-52 208.8 166 66.3
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 8.6e-52 207.2 167 67.1
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 4.3e-51 204.9 168 67.3
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 2.1e-50 202.6 164 63.4
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 3.6e-50 201.8 168 66.7
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 6.4e-47 191.0 164 60.4
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 1.7e-44 183.0 164 58.5
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 6.6e-44 181.0 164 57.3
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 7.3e-43 177.6 165 56.4
C03p10720 Brassica napus HOM05D007340 ORTHO05D008979 1.9e-35 152.9 138 61.6
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 4.0e-25 118.6 165 41.8
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 5.8e-24 114.8 162 39.5
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 7.6e-24 114.4 162 40.7
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 7.6e-24 114.4 165 38.8
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 9.9e-24 114.0 159 40.9
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 5.4e-22 108.2 163 35.6
BcaB01g04883 Brassica carinata HOM05D007340 ORTHO05D008979 9.3e-22 107.5 146 44.5
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 1.2e-21 107.1 158 37.3
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 1.2e-21 107.1 158 37.3
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 1.2e-21 107.1 167 37.7
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 1.6e-21 106.7 163 36.8
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 2.1e-21 106.3 166 36.1
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 1.3e-20 103.6 166 38.6
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 1.7e-20 103.2 166 35.5
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 3.9e-20 102.1 166 35.5
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 5.1e-20 101.7 155 36.8
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 5.1e-20 101.7 158 34.8
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 1.5e-19 100.1 165 35.2
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 3.3e-19 99.0 163 35.6
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 1.6e-18 96.7 163 35.6
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 3.6e-18 95.5 165 34.5
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 4.8e-18 95.1 165 37.0
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 4.8e-18 95.1 160 36.9
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 6.2e-18 94.7 155 34.2
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.1e-17 94.0 165 35.8
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 1.1e-17 94.0 163 33.7
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 5.3e-17 91.7 150 37.3
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 1.2e-16 90.5 163 36.2
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 2.0e-16 89.7 160 32.5
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 2.0e-16 89.7 143 42.7
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 5.8e-16 88.2 167 37.1
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 2.9e-15 85.9 165 37.0
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 3.8e-15 85.5 166 33.7
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 8.4e-15 84.3 165 34.5
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 1.1e-14 84.0 162 34.0
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 1.4e-14 83.6 79 53.2
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 1.9e-14 83.2 159 36.5
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 2.4e-14 82.8 143 37.1
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 4.2e-14 82.0 153 34.6
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 4.2e-14 82.0 156 38.5
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 7.1e-14 81.3 129 33.3
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 1.6e-13 80.1 149 30.9
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 3.5e-13 79.0 169 33.1
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 4.6e-13 78.6 166 31.9
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 4.6e-13 78.6 136 39.7
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 7.9e-13 77.8 165 30.3
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 1.3e-12 77.0 147 34.0
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 2.3e-12 76.3 138 34.8
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 6.7e-12 74.7 136 33.8
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 1.1e-11 73.9 136 33.8
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 1.1e-11 73.9 160 31.2
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 1.1e-11 73.9 149 34.2
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 3.3e-11 72.4 91 38.5
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 3.3e-11 72.4 164 28.0
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 7.4e-11 71.2 114 36.0
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 7.4e-11 71.2 164 27.4
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.6e-10 70.1 149 30.2
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 1.6e-10 70.1 164 32.3
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 1.6e-10 70.1 167 29.3
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 1.6e-10 70.1 146 34.9
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 2.1e-10 69.7 164 26.8
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 2.8e-10 69.3 164 27.4
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 2.8e-10 69.3 98 36.7
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 2.8e-10 69.3 89 37.1
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 3.7e-10 68.9 164 27.4
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 4.8e-10 68.6 164 27.4
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 1.1e-09 67.4 142 32.4
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 3.1e-09 65.9 164 26.8
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 5.3e-09 65.1 104 35.6
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 6.9e-09 64.7 78 43.6
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 1.2e-08 63.9 78 43.6
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 5.8e-08 61.6 77 42.9
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 4.9e-07 58.5 78 42.3
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 4.9e-07 58.5 78 42.3
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 6.4e-07 58.2 158 29.7
Nn2g14075 Nelumbo nucifera HOM05D000001 ORTHO05D000003 9.3e-06 54.3 132 27.3


User provided reference genes

Program Settings