Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 7.6e-79 297.0 137 100.0
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 3.2e-77 291.6 137 98.5
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 3.5e-76 288.1 137 97.8
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 7.8e-76 287.0 137 95.6
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 7.8e-76 287.0 137 95.6
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 4.3e-74 281.2 136 94.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 4.5e-71 271.2 135 88.9
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 4.2e-69 264.6 135 88.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.2e-68 263.1 135 86.7
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.7e-68 261.9 135 85.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 7.9e-68 260.4 135 86.7
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 4.3e-66 254.6 132 84.8
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 7.4e-66 253.8 135 82.2
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 8.7e-59 230.3 135 72.6
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 5.6e-58 227.6 135 71.9
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.6e-58 227.6 133 73.7
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 9.6e-58 226.9 135 71.9
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 9.6e-58 226.9 134 73.1
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 3.7e-57 224.9 133 73.7
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 4.8e-57 224.6 133 72.9
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.1e-56 223.4 133 72.9
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.1e-56 223.4 133 72.9
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.8e-56 222.6 133 73.7
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.8e-56 222.6 133 74.4
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.8e-56 222.6 133 72.2
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.1e-56 221.9 133 69.9
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 5.3e-56 221.1 133 71.4
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 6.9e-56 220.7 135 70.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 6.9e-56 220.7 133 70.7
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 9.0e-56 220.3 133 72.2
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.2e-55 219.9 135 71.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.5e-55 219.5 133 72.2
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.0e-55 219.2 137 70.8
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 2.0e-55 219.2 133 70.7
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.6e-55 218.8 133 69.9
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.6e-55 218.8 135 69.6
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.5e-55 218.0 133 71.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 4.5e-55 218.0 129 70.5
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.5e-55 218.0 133 69.9
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 5.8e-55 217.6 129 72.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.8e-55 217.6 130 73.1
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 5.8e-55 217.6 131 71.0
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.6e-55 217.2 133 68.4
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 7.6e-55 217.2 133 69.2
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.0e-54 216.9 131 73.3
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 70.1
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.3e-54 216.5 133 67.7
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.3e-54 216.5 134 70.1
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.3e-54 216.5 131 68.7
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.7e-54 216.1 133 69.2
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.7e-54 216.1 127 70.9
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.7e-54 216.1 133 68.4
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 2.2e-54 215.7 133 67.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 2.2e-54 215.7 133 67.7
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.2e-54 215.7 133 68.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.2e-54 215.7 130 72.3
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 2.9e-54 215.3 133 69.2
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 3.8e-54 214.9 133 68.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.5e-54 214.2 130 71.5
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.4e-54 213.8 134 69.4
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 8.4e-54 213.8 133 68.4
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 8.4e-54 213.8 136 66.9
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.4e-53 213.0 133 69.2
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.5e-53 212.2 133 67.7
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.2e-53 211.8 133 67.7
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 4.2e-53 211.5 133 66.9
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 4.2e-53 211.5 133 66.9
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 4.2e-53 211.5 128 68.8
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 4.2e-53 211.5 133 68.4
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.5e-53 211.1 133 68.4
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 5.5e-53 211.1 133 65.4
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 5.5e-53 211.1 133 66.9
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 7.1e-53 210.7 131 67.2
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 7.1e-53 210.7 133 66.2
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.1e-53 210.7 133 66.2
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 9.3e-53 210.3 133 68.4
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.2e-52 209.9 133 67.7
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-52 209.9 133 66.2
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.6e-52 209.5 133 67.7
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-52 209.5 121 73.6
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-52 209.1 130 70.0
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 2.1e-52 209.1 132 67.4
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.7e-52 208.8 133 67.7
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 3.5e-52 208.4 133 66.2
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.6e-52 208.0 133 66.9
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 6.0e-52 207.6 133 65.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.0e-51 206.8 133 67.7
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.3e-51 206.5 133 65.4
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.8e-51 206.1 133 65.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.0e-51 205.3 132 65.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 3.0e-51 205.3 128 66.4
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 3.9e-51 204.9 133 63.9
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 6.7e-51 204.1 133 65.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 6.7e-51 204.1 135 64.4
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 8.7e-51 203.8 133 64.7
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 8.7e-51 203.8 133 64.7
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.1e-50 203.4 133 64.7
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.5e-50 203.0 128 67.2
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.3e-50 201.8 133 64.7
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.3e-50 201.8 131 64.9
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 4.3e-50 201.4 126 66.7
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 4.3e-50 201.4 135 64.4
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 5.7e-50 201.1 132 62.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.7e-50 201.1 121 71.9
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 7.4e-50 200.7 133 65.4
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 9.7e-50 200.3 133 63.9
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.3e-49 199.9 127 66.1
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.6e-49 199.5 128 67.2
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 2.4e-48 195.7 169 55.0
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.1e-48 195.3 124 65.3
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 3.1e-48 195.3 133 63.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.1e-48 194.9 132 61.4
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.1e-48 194.9 132 60.6
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 6.9e-48 194.1 121 70.2
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 6.9e-48 194.1 128 64.8
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 9.0e-48 193.7 124 64.5
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 9.0e-48 193.7 133 63.9
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.2e-47 193.4 120 67.5
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.5e-47 193.0 118 72.0
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 5.9e-47 191.0 128 62.5
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.0e-46 190.3 134 60.4
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-45 186.8 123 65.9
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.4e-45 186.4 127 64.6
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.4e-45 186.4 128 64.1
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.2e-44 183.3 132 58.3
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.6e-44 181.4 130 61.5
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 7.9e-44 180.6 131 57.3
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 6.7e-43 177.6 121 62.8
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 5.7e-42 174.5 127 60.6
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 7.4e-42 174.1 131 56.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 5.3e-40 167.9 106 68.9
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 6.9e-40 167.5 101 68.3
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-39 166.4 130 58.5
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.0e-39 166.0 125 60.0
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.9e-39 164.5 131 55.0
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.4e-37 159.8 97 72.2
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.9e-37 159.5 129 52.7
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.5e-37 159.1 130 55.4
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 5.1e-35 151.4 134 56.7
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.7e-33 146.4 95 68.4
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 9.1e-32 140.6 93 64.5
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.7e-31 137.5 84 69.0
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 5.0e-30 134.8 141 44.0
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.4e-29 133.3 74 78.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.6e-23 113.2 73 69.9
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.6e-23 112.5 112 50.9
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.9e-22 109.0 68 67.6
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-22 108.2 63 73.0
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.1e-20 101.3 78 57.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.3e-19 99.4 79 58.2


User provided reference genes

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